Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005544.1

Orthogroup ID

OG0007736

Physical Location & Seq

Genomic Coordinates Reverse (-)

43485 .. 49655

Gene Structure 6171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005544.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atggctctggtaccctcatctgcgccagtgaacgaaagcccagtgatcaccgaggttgacatgggcggcgacgactccacacccaccgtccgagccaccgtcgtccaagcctccaccgtcttctacgacactcccgccactctagataaggctgagagattgttggctgaagcagctgggtatggatcgcagctggttgtgtttccggaagcatttgtgggagggtatccgcgaggctccaatttcggggttgcgattgggaacagaactgccaaggggaaagaagagttccgaaagtatcatgccgcagccattactgtgcctggtcctgaagttgaccgattggcatcaatggctggaaaatataaggtattcttggtaatgggtgtgatagagaaagaagggtatactctttattgtactgttctgttttttgattctcaaggttgctacctgggaaagcaccgaaaaataatgccaacagcattagagcgaatcatttggggatttggagatggatccacaattcctgtgtttgatactccaattggaaaaataggtgctgccatttgttgggaaaataagatgccacttttaaggacagcaatgtatgctaaaggcattgaaatatattgtgctccgacagctgattctagggatctatggcaagcgtcaatgacccatattgctttggaaggtgggtgctttgtcttatcagctaaccaattctgtcgaaggaaagactatccccctccaccagagtatatattttcaggcacggaagaggaacttactcctgattctgttgtctgtgctggaggcagtgttatcatatcaccatcagggactatacttgctgggcccaattatgacggggaggcactcatctcagcagatcttgatattggagatatagcaagggcgaagtttgattttgatgtggtaggacactatgcacggcctgaagtgcttagcttgattgtgagggaccatccagcaaatccggttacttttacatcagcctcagcgaagacagaagtctcagacaaatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00380 ko00460 ko00627 ko00643 ko00910 ko01100 ko01110 ko01120 map00380 map00460 map00627 map00643 map00910 map01100 map01110 map01120

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

351

Amino Acids

37.69

Weight (kDa)

5.02

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44300 AT3G44310 AT3G44310 AT3G44310 AT3G44310 AT3G44320 AT5G22300 AT5G22300
fragaria_vesca	FvH4_3g25810 FvH4_3g25810 FvH4_3g25810
malus_domestica	MD03G1150700.v1.1
prunus_persica	Prupe.6G137600_v2.0.a1
pyrus_communis	pycom03g10480
rosa_chinensis	RchiOBHm_Chr5g0047031
rosa_laevigata	RLG00000034459
rosa_multiflora	Rmu_sc0002756.1_g000007 Rmu_sc0005544.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034410
rosa_rugosa	Rorug05G0233300
rosa_samantha	Rh5AG312500 Rh5BG321600 Rh5CG347800
rosa_wichuraiana	Rw5G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	573
AccI	GTMKAC	1 cut(s)	407
AccII	CGCG	1 cut(s)	232
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	4 cut(s)	66, 135, 230, 306
AclWI	GGATC	4 cut(s)	193, 513, 526, 666
AcuI	CTGAAG	3 cut(s)	189, 351, 984
AfaI	GTAC	2 cut(s)	12, 421
AfiI	CCNNNNNNNGG	2 cut(s)	246, 573
AgsI	TTSAA	1 cut(s)	626
AjnI	CCWGG	2 cut(s)	322, 453
AluBI	AGCT	5 cut(s)	176, 193, 647, 719, 975
AluI	AGCT	5 cut(s)	176, 193, 647, 719, 975
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	1 cut(s)	1045
AlwI	GGATC	4 cut(s)	193, 513, 526, 666
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	2 cut(s)	860, 959
ApaI	GGGCCC	1 cut(s)	864
ApeKI	GCWGC	4 cut(s)	173, 190, 308, 563
Asp718I	GGTACC	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	4 cut(s)	326, 860, 861, 988
AsuHPI	GGTGA	2 cut(s)	40, 828
AvaII	GGWCC	2 cut(s)	326, 988
BaeGI	GKGCMC	1 cut(s)	864
BamHI	GGATCC	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	864
BbsI	GAAGAC	2 cut(s)	112, 1037
Bbv12I	GWGCWC	1 cut(s)	640
BbvCI	CCTCAGC	1 cut(s)	1024
BbvI	GCAGC	4 cut(s)	185, 202, 320, 550
BccI	CCATC	3 cut(s)	509, 847, 999
BceAI	ACGGC	1 cut(s)	974
BciT130I	CCWGG	2 cut(s)	324, 455
BciVI	GTATCC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	1045
BfaI	CTAG	2 cut(s)	143, 654
BfuI	GTATCC	1 cut(s)	237
BglII	AGATCT	1 cut(s)	895
BisI	GCNGC	6 cut(s)	67, 174, 191, 306, 309, 564
BlpI	GCTNAGC	1 cut(s)	971
BlsI	GCNGC	6 cut(s)	68, 175, 192, 307, 310, 565
Bme1390I	CCNGG	2 cut(s)	324, 455
Bme18I	GGWCC	2 cut(s)	326, 988
BmgT120I	GGNCC	4 cut(s)	326, 860, 861, 988
BmiI	GGNNCC	5 cut(s)	12, 238, 520, 862, 989
BmrFI	CCNGG	2 cut(s)	324, 455
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	356, 576
BmuI	ACTGGG	1 cut(s)	35
BoxI	GACNNNNGTC	1 cut(s)	1037
BpiI	GAAGAC	2 cut(s)	112, 1037
BpmI	CTGGAG	1 cut(s)	837
Bpu10I	CCTNAGC	1 cut(s)	1024
Bpu1102I	GCTNAGC	1 cut(s)	971
BpuEI	CTTGAG	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	346
BsaJI	CCNNGG	3 cut(s)	51, 273, 454
BsaWI	WCCGGW	2 cut(s)	205, 1003
BsaXI	ACNNNNNCTCC	2 cut(s)	810, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 573
Bse1I	ACTGG	2 cut(s)	26, 41
Bse3DI	GCAATG	1 cut(s)	612
Bse8I	GATNNNNATC	1 cut(s)	346
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	324, 455
BseDI	CCNNGG	3 cut(s)	51, 273, 454
BseGI	GGATG	1 cut(s)	991
BseJI	GATNNNNATC	1 cut(s)	346
BseLI	CCNNNNNNNGG	2 cut(s)	246, 573
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	4 cut(s)	144, 903, 1038, 1056
BseNI	ACTGG	2 cut(s)	26, 41
BseSI	GKGCMC	1 cut(s)	864
BseXI	GCAGC	4 cut(s)	185, 202, 320, 550
BseYI	CCCAGC	2 cut(s)	176, 857
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	862, 961
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	640
BsiSI	CCGG	2 cut(s)	206, 1004
BslFI	GGGAC	2 cut(s)	859, 1001
BslI	CCNNNNNNNGG	2 cut(s)	246, 573
BsmAI	GTCTC	1 cut(s)	1045
BsmFI	GGGAC	2 cut(s)	859, 1001
BsnI	GGCC	2 cut(s)	862, 961
Bsp120I	GGGCCC	1 cut(s)	860
Bsp1286I	GDGCHC	2 cut(s)	640, 864
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	5 cut(s)	45, 185, 518, 658, 895
Bsp1720I	GCTNAGC	1 cut(s)	971
BspACI	CCGC	4 cut(s)	66, 135, 230, 306
BspANI	GGCC	2 cut(s)	862, 961
BspCNI	CTCAG	4 cut(s)	145, 902, 1037, 1055
BspEI	TCCGGA	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	5 cut(s)	12, 238, 520, 862, 989
BspPI	GGATC	4 cut(s)	193, 513, 526, 666
BspT107I	GGYRCC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	26, 41
BssECI	CCNNGG	3 cut(s)	51, 273, 454
BssMI	GATC	5 cut(s)	45, 185, 518, 658, 895
BssNAI	GTATAC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	273
Bst1107I	GTATAC	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	324, 455
Bst4CI	ACNGT	5 cut(s)	88, 100, 118, 319, 424
Bst6I	CTCTTC	2 cut(s)	279, 777
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	5 cut(s)	153, 889, 971, 1024, 1042
BstF5I	GGATG	1 cut(s)	991
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	5 cut(s)	48, 188, 521, 661, 898
BstMAI	GTCTC	1 cut(s)	1045
BstMBI	GATC	5 cut(s)	45, 185, 518, 658, 895
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 353, 611, 644, 967
BstNI	CCWGG	2 cut(s)	324, 455
BstPAI	GACNNNNGTC	1 cut(s)	1037
BstSCI	CCNGG	2 cut(s)	322, 453
BstSLI	GKGCMC	1 cut(s)	864
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	4 cut(s)	185, 202, 320, 550
BstV2I	GAAGAC	2 cut(s)	112, 1037
BstX2I	RGATCY	3 cut(s)	518, 658, 895
BstYI	RGATCY	3 cut(s)	518, 658, 895
BstZ17I	GTATAC	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	862, 961
BtsCI	GGATG	1 cut(s)	991
BtsI	GCAGTG	1 cut(s)	829
BtsIMutI	CAGTG	3 cut(s)	33, 48, 829
Cac8I	GCNNGC	1 cut(s)	669
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	4 cut(s)	326, 860, 861, 988
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	2 cut(s)	11, 420
CviAII	CATG	2 cut(s)	61, 302
CviQI	GTAC	2 cut(s)	11, 420
DdeI	CTNAG	5 cut(s)	153, 889, 971, 1024, 1042
DpnI	GATC	5 cut(s)	47, 187, 520, 660, 897
DpnII	GATC	5 cut(s)	45, 185, 518, 658, 895
Eam1104I	CTCTTC	2 cut(s)	279, 777
EarI	CTCTTC	2 cut(s)	279, 777
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	864
Eco47I	GGWCC	2 cut(s)	326, 988
Eco57I	CTGAAG	3 cut(s)	189, 351, 984
EcoRII	CCWGG	2 cut(s)	322, 453
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	864
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	64, 305
FalI	AAGNNNNNCTT	4 cut(s)	359, 391, 774, 806
FaqI	GGGAC	2 cut(s)	859, 1001
FatI	CATG	2 cut(s)	60, 301
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	407
Fnu4HI	GCNGC	6 cut(s)	67, 174, 191, 306, 309, 564
FokI	GGATG	1 cut(s)	978
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	6 cut(s)	67, 174, 191, 306, 309, 564
FspBI	CTAG	2 cut(s)	143, 654
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	6 cut(s)	67, 174, 191, 306, 309, 564
GsaI	CCCAGC	2 cut(s)	180, 861
GsuI	CTGGAG	1 cut(s)	837
HaeIII	GGCC	2 cut(s)	862, 961
HapII	CCGG	2 cut(s)	206, 1004
HgaI	GACGC	1 cut(s)	660
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	64, 305
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	2 cut(s)	58, 337
HindII	GTYRAC	2 cut(s)	58, 337
HinfI	GANTC	5 cut(s)	74, 437, 495, 650, 800
HpaII	CCGG	2 cut(s)	206, 1004
HphI	GGTGA	2 cut(s)	40, 828
Hpy166II	GTNNAC	4 cut(s)	31, 58, 337, 408
Hpy188I	TCNGA	4 cut(s)	92, 293, 642, 1045
Hpy188III	TCNNGA	5 cut(s)	143, 206, 329, 797, 899
Hpy8I	GTNNAC	4 cut(s)	31, 58, 337, 408
Hpy99I	CGWCG	2 cut(s)	74, 104
HpyAV	CCTTC	3 cut(s)	395, 689, 729
HpyCH4III	ACNGT	5 cut(s)	88, 100, 118, 319, 424
HpyCH4V	TGCA	1 cut(s)	956
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 353, 611, 644, 967
HpyF3I	CTNAG	5 cut(s)	153, 889, 971, 1024, 1042
Hsp92II	CATG	2 cut(s)	64, 305
HspAI	GCGC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	205
KpnI	GGTACC	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	5 cut(s)	45, 185, 518, 658, 895
LmnI	GCTCC	2 cut(s)	242, 643
Lsp1109I	GCAGC	4 cut(s)	185, 202, 320, 550
LweI	GCATC	2 cut(s)	356, 576
MaeI	CTAG	2 cut(s)	143, 654
MaeIII	GTNAC	1 cut(s)	1006
MalI	GATC	5 cut(s)	47, 187, 520, 660, 897
MboI	GATC	5 cut(s)	45, 185, 518, 658, 895
MboII	GAAGA	4 cut(s)	112, 296, 794, 1042
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	3 cut(s)	518, 658, 895
MhlI	GDGCHC	2 cut(s)	640, 864
MluCI	AATT	5 cut(s)	241, 525, 546, 725, 865
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	665
MroI	TCCGGA	1 cut(s)	205
MseI	TTAA	1 cut(s)	596
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	3 cut(s)	176, 193, 647
MspI	CCGG	2 cut(s)	206, 1004
MspR9I	CCNGG	2 cut(s)	324, 455
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	324, 455
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	5 cut(s)	173, 353, 611, 644, 967
NdeII	GATC	5 cut(s)	45, 185, 518, 658, 895
NlaIII	CATG	2 cut(s)	64, 305
NlaIV	GGNNCC	5 cut(s)	12, 238, 520, 862, 989
PfeI	GAWTC	4 cut(s)	437, 495, 650, 800
PflMI	CCANNNNNTGG	1 cut(s)	573
PkrI	GCNGC	6 cut(s)	68, 175, 192, 307, 310, 565
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PshAI	GACNNNNGTC	1 cut(s)	1037
Psp6I	CCWGG	2 cut(s)	322, 453
PspFI	CCCAGC	2 cut(s)	176, 857
PspGI	CCWGG	2 cut(s)	322, 453
PspN4I	GGNNCC	5 cut(s)	12, 238, 520, 862, 989
PspOMI	GGGCCC	1 cut(s)	860
PspPI	GGNCC	4 cut(s)	326, 860, 861, 988
PsuI	RGATCY	3 cut(s)	518, 658, 895
PvuII	CAGCTG	3 cut(s)	176, 193, 647
RsaI	GTAC	2 cut(s)	12, 421
RsaNI	GTAC	2 cut(s)	11, 420
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	596
SatI	GCNGC	6 cut(s)	67, 174, 191, 306, 309, 564
Sau3AI	GATC	5 cut(s)	45, 185, 518, 658, 895
Sau96I	GGNCC	4 cut(s)	326, 860, 861, 988
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	324, 455
SduI	GDGCHC	2 cut(s)	640, 864
SfaNI	GCATC	2 cut(s)	356, 576
SinI	GGWCC	2 cut(s)	326, 988
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	441
SmoI	CTYRAG	1 cut(s)	441
Sse9I	AATT	5 cut(s)	241, 525, 546, 725, 865
SsiI	CCGC	4 cut(s)	66, 135, 230, 306
SspMI	CTAG	2 cut(s)	143, 654
StyD4I	CCNGG	2 cut(s)	322, 453
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	5 cut(s)	88, 100, 118, 319, 424
TaqI	TCGA	1 cut(s)	733
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	5 cut(s)	241, 525, 546, 725, 865
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	2 cut(s)	69, 308
TfiI	GAWTC	4 cut(s)	437, 495, 650, 800
Tru1I	TTAA	1 cut(s)	596
Tru9I	TTAA	1 cut(s)	596
TscAI	CASTG	3 cut(s)	33, 48, 829
TseI	GCWGC	4 cut(s)	173, 190, 308, 563
TspGWI	ACGGA	1 cut(s)	794
TspRI	CASTG	3 cut(s)	33, 48, 829
Van91I	CCANNNNNTGG	1 cut(s)	573
VpaK11BI	GGWCC	2 cut(s)	326, 988
XbaI	TCTAGA	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	407
XspI	CTAG	2 cut(s)	143, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.