Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

12766576 .. 12769534

Gene Structure 2959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAATCTCTGAAGCATGTGGAAACCCGTTCATCAAAGAAAAATAAGAAACTAGAATTTAACAGTGGTCGAGTCTCACCTGTTCCAAATGGAGGCTCACAGTGGGGAGCTCTTAATATTTCTAAAACTTTTAATCCAGTGTTTGGGTCATCCAAGAAGTTTTTCTCAGCTTCTGTTCCTGGATCAAGAATCATTTCTCGAGCTACATCCCCAATTTCAAGGCGCCCCAGCCCACCTCGTTCTACAACACCAACTCCAACTCTGGGAGGACTCACATCGCCAAAGATTGTTGTAGATGATGCTAAAAGGACAAATGAAAGCCTTAGCCAGGAGGTTGAAAGTCTTACTCGAAAAGCCCAACTAAAAGAAGTTGAGCTGGAAAGAACAACTAAACAGCTGAAGGAAGCAATAGCAATTGCAGGTGCGGAGACTGCAAAATGCAAAGCAGCAAAGGAAGCGATCCAGTCACTTACTGCTCAATTGAAGGACATGGCTGAAAGGCTGCCTGTTGGAGCAGTGCGGAATATCAAATCACCCTCTCTAGCTTCTTCCTGGGGTTCTGATCCTTCCAATGAAGTTTCTATTCCTCCGATTGACCGATTGAACGGTCAAGTAACATTCCAAGAACCAGACTCCAATGGATCAAACATCCAATTGCTTTCCAATGGGTCCAACACCACCAGTAACCGCAGTTCAAGTCACAACAAACAAGGACATCTAGATGTAGCAACCAGAAATGGGAACAAAATTAAAGAAAACGAATCTCATCATGAAACTGAATGGGTTGAGCAAGATGAGCCTGGTGTATACATCACACTTACTTCCCTACCAGGAGGTGCCAAGGATCTCAAGCGAGTTCGTTTCAGTCGGAAGCGATTTAGTGAGAAACAAGCAGAACAGTGGTGGGCAGAGAACCGAGCAAGAGTATACGAACAATACAATGTGCGCATGGTAGACAAGTCTAGTGTAGGCATTGGGAGCGAGGACTTGGCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

333

Amino Acids

36.45

Weight (kDa)

9.76

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRX_N	PF13713	143 - 177	4.5e-15	Transcription factor BRX N-terminal domain
BRX_assoc	PF16627	184 - 252	3.3e-23	Unstructured region between BRX_N and BRX domain
BRX	PF08381	258 - 313	1.6e-30	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	410
Acc16I	TGCGCA	1 cut(s)	947
Acc36I	ACCTGC	1 cut(s)	410
AccB1I	GGYRCC	2 cut(s)	222, 836
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccI	GTMKAC	3 cut(s)	807, 927, 954
AciI	CCGC	3 cut(s)	425, 520, 688
AclWI	GGATC	5 cut(s)	190, 454, 557, 649, 852
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	2 cut(s)	32, 419
AcyI	GRCGYC	1 cut(s)	223
AfiI	CCNNNNNNNGG	5 cut(s)	92, 143, 263, 328, 738
AgsI	TTSAA	5 cut(s)	219, 338, 484, 604, 696
AjnI	CCWGG	5 cut(s)	178, 327, 551, 799, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	6 cut(s)	110, 170, 203, 376, 397, 545
AluI	AGCT	6 cut(s)	110, 170, 203, 376, 397, 545
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	2 cut(s)	79, 422
AlwI	GGATC	5 cut(s)	190, 454, 557, 649, 852
AlwNI	CAGNNNCTG	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	446, 502
ApoI	RAATTY	1 cut(s)	56
Asp700I	GAANNNNTTC	2 cut(s)	161, 193
AspLEI	GCGC	2 cut(s)	225, 948
AspS9I	GGNCC	1 cut(s)	669
AsuHPI	GGTGA	2 cut(s)	69, 525
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	669
BanI	GGYRCC	2 cut(s)	222, 836
BanII	GRGCYC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	458, 489
BciT130I	CCWGG	5 cut(s)	180, 329, 553, 801, 831
BcoDI	GTCTC	2 cut(s)	79, 422
BfaI	CTAG	4 cut(s)	53, 542, 719, 963
BfoI	RGCGCY	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	410
BisI	GCNGC	2 cut(s)	447, 503
BlsI	GCNGC	2 cut(s)	448, 504
Bme1390I	CCNGG	5 cut(s)	180, 329, 553, 801, 831
Bme18I	GGWCC	1 cut(s)	669
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	669
BmiI	GGNNCC	3 cut(s)	224, 670, 838
BmrFI	CCNGG	5 cut(s)	180, 329, 553, 801, 831
BmsI	GCATC	1 cut(s)	289
Bpu10I	CCTNAGC	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	833
BsaHI	GRCGYC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	552, 840
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	5 cut(s)	92, 143, 263, 328, 738
Bse1I	ACTGG	3 cut(s)	137, 463, 681
BseBI	CCWGG	5 cut(s)	180, 329, 553, 801, 831
BseDI	CCNNGG	2 cut(s)	552, 840
BseGI	GGATG	3 cut(s)	149, 206, 648
BseLI	CCNNNNNNNGG	5 cut(s)	92, 143, 263, 328, 738
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	3 cut(s)	137, 463, 681
BseXI	GCAGC	2 cut(s)	458, 489
BseYI	CCCAGC	1 cut(s)	227
BshNI	GGYRCC	2 cut(s)	222, 836
BsiHKAI	GWGCWC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	198
BslI	CCNNNNNNNGG	5 cut(s)	92, 143, 263, 328, 738
BsmAI	GTCTC	2 cut(s)	79, 422
BsoBI	CYCGRG	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	5 cut(s)	182, 459, 562, 641, 844
BspACI	CCGC	3 cut(s)	425, 520, 688
BspCNI	CTCAG	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	3 cut(s)	224, 670, 838
BspMI	ACCTGC	1 cut(s)	410
BspPI	GGATC	5 cut(s)	190, 454, 557, 649, 852
BspT107I	GGYRCC	2 cut(s)	222, 836
BsrI	ACTGG	3 cut(s)	137, 463, 681
BssECI	CCNNGG	2 cut(s)	552, 840
BssMI	GATC	5 cut(s)	182, 459, 562, 641, 844
BssNAI	GTATAC	2 cut(s)	808, 928
BssNI	GRCGYC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	840
Bst1107I	GTATAC	2 cut(s)	808, 928
Bst2UI	CCWGG	5 cut(s)	180, 329, 553, 801, 831
Bst4CI	ACNGT	4 cut(s)	65, 102, 608, 900
BstACI	GRCGYC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	166, 323
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	3 cut(s)	149, 206, 648
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	225, 948
BstKTI	GATC	5 cut(s)	185, 462, 565, 644, 847
BstMAI	GTCTC	2 cut(s)	79, 422
BstMBI	GATC	5 cut(s)	182, 459, 562, 641, 844
BstMWI	GCNNNNNNNGC	4 cut(s)	431, 455, 796, 978
BstNI	CCWGG	5 cut(s)	180, 329, 553, 801, 831
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	5 cut(s)	178, 327, 551, 799, 829
BstV1I	GCAGC	2 cut(s)	458, 489
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BstZ17I	GTATAC	2 cut(s)	808, 928
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	149, 206, 648
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	5 cut(s)	70, 107, 144, 522, 905
BveI	ACCTGC	1 cut(s)	410
CaiI	CAGNNNCTG	1 cut(s)	173
CciI	TCATGA	1 cut(s)	769
CfoI	GCGC	2 cut(s)	225, 948
Cfr13I	GGNCC	1 cut(s)	669
CviAII	CATG	4 cut(s)	17, 490, 770, 949
DdeI	CTNAG	2 cut(s)	166, 323
DinI	GGCGCC	1 cut(s)	224
DpnI	GATC	5 cut(s)	184, 461, 564, 643, 846
DpnII	GATC	5 cut(s)	182, 459, 562, 641, 844
Ecl136II	GAGCTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	840
Eco24I	GRGCYC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	669
Eco53kI	GAGCTC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	32, 419
Eco88I	CYCGRG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoRII	CCWGG	5 cut(s)	178, 327, 551, 799, 829
EcoT14I	CCWWGG	1 cut(s)	840
EcoT38I	GRGCYC	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	4 cut(s)	20, 493, 773, 952
FaiI	YATR	6 cut(s)	18, 491, 771, 808, 928, 950
FatI	CATG	4 cut(s)	16, 489, 769, 948
FblI	GTMKAC	3 cut(s)	807, 927, 954
Fnu4HI	GCNGC	2 cut(s)	447, 503
FokI	GGATG	3 cut(s)	136, 193, 635
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	2 cut(s)	447, 503
FspAI	RTGCGCAY	1 cut(s)	947
FspBI	CTAG	4 cut(s)	53, 542, 719, 963
FspI	TGCGCA	1 cut(s)	947
GlaI	GCGC	2 cut(s)	224, 947
GluI	GCNGC	2 cut(s)	447, 503
GsaI	CCCAGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	226
HhaI	GCGC	2 cut(s)	225, 948
Hin1I	GRCGYC	1 cut(s)	223
Hin1II	CATG	4 cut(s)	20, 493, 773, 952
Hin6I	GCGC	2 cut(s)	223, 946
HinP1I	GCGC	2 cut(s)	223, 946
HinfI	GANTC	6 cut(s)	5, 72, 189, 270, 632, 761
HphI	GGTGA	2 cut(s)	69, 525
Hpy166II	GTNNAC	3 cut(s)	808, 928, 955
Hpy188I	TCNGA	4 cut(s)	12, 562, 591, 870
Hpy188III	TCNNGA	4 cut(s)	186, 198, 719, 770
Hpy8I	GTNNAC	3 cut(s)	808, 928, 955
HpyAV	CCTTC	3 cut(s)	394, 478, 576
HpyCH4III	ACNGT	4 cut(s)	65, 102, 608, 900
HpyCH4V	TGCA	3 cut(s)	419, 434, 441
HpyF10VI	GCNNNNNNNGC	4 cut(s)	431, 455, 796, 978
HpyF3I	CTNAG	2 cut(s)	166, 323
Hsp92I	GRCGYC	1 cut(s)	223
Hsp92II	CATG	4 cut(s)	20, 493, 773, 952
HspAI	GCGC	2 cut(s)	223, 946
KasI	GGCGCC	1 cut(s)	222
Kzo9I	GATC	5 cut(s)	182, 459, 562, 641, 844
LmnI	GCTCC	3 cut(s)	107, 512, 978
Lsp1109I	GCAGC	2 cut(s)	458, 489
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	4 cut(s)	53, 542, 719, 963
MaeIII	GTNAC	4 cut(s)	465, 613, 683, 698
MalI	GATC	5 cut(s)	184, 461, 564, 643, 846
MboI	GATC	5 cut(s)	182, 459, 562, 641, 844
MboII	GAAGA	1 cut(s)	540
MfeI	CAATTG	3 cut(s)	414, 479, 653
MflI	RGATCY	1 cut(s)	844
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	6 cut(s)	56, 213, 414, 479, 653, 747
Mly113I	GGCGCC	1 cut(s)	223
MlyI	GAGTC	3 cut(s)	81, 264, 626
MmeI	TCCRAC	4 cut(s)	281, 490, 696, 848
MnlI	CCTC	8 cut(s)	86, 246, 260, 325, 547, 597, 827, 976
MroXI	GAANNNNTTC	2 cut(s)	161, 193
MseI	TTAA	4 cut(s)	60, 114, 132, 750
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	397
MspR9I	CCNGG	5 cut(s)	180, 329, 553, 801, 831
MunI	CAATTG	3 cut(s)	414, 479, 653
MvaI	CCWGG	5 cut(s)	180, 329, 553, 801, 831
MwoI	GCNNNNNNNGC	4 cut(s)	431, 455, 796, 978
NarI	GGCGCC	1 cut(s)	223
NdeII	GATC	5 cut(s)	182, 459, 562, 641, 844
NlaIII	CATG	4 cut(s)	20, 493, 773, 952
NlaIV	GGNNCC	3 cut(s)	224, 670, 838
NmuCI	GTSAC	2 cut(s)	465, 698
NsbI	TGCGCA	1 cut(s)	947
NspI	RCATGY	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	198
PagI	TCATGA	1 cut(s)	769
PaqCI	CACCTGC	1 cut(s)	410
PdmI	GAANNNNTTC	2 cut(s)	161, 193
PfeI	GAWTC	3 cut(s)	5, 189, 761
PflMI	CCANNNNNTGG	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	448, 504
PleI	GAGTC	3 cut(s)	80, 264, 626
PluTI	GGCGCC	1 cut(s)	226
PpsI	GAGTC	3 cut(s)	80, 264, 626
Psp124BI	GAGCTC	1 cut(s)	112
Psp6I	CCWGG	5 cut(s)	178, 327, 551, 799, 829
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	5 cut(s)	178, 327, 551, 799, 829
PspN4I	GGNNCC	3 cut(s)	224, 670, 838
PspPI	GGNCC	1 cut(s)	669
PsrI	GAACNNNNNNTAC	2 cut(s)	676, 708
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	844
PvuII	CAGCTG	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	720
SacI	GAGCTC	1 cut(s)	112
SaqAI	TTAA	4 cut(s)	60, 114, 132, 750
SatI	GCNGC	2 cut(s)	447, 503
Sau3AI	GATC	5 cut(s)	182, 459, 562, 641, 844
Sau96I	GGNCC	1 cut(s)	669
SchI	GAGTC	3 cut(s)	81, 264, 626
ScrFI	CCNGG	5 cut(s)	180, 329, 553, 801, 831
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	1 cut(s)	289
SfoI	GGCGCC	1 cut(s)	224
Sfr274I	CTCGAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	669
SlaI	CTCGAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	2 cut(s)	198, 848
SmoI	CTYRAG	2 cut(s)	198, 848
Sse9I	AATT	6 cut(s)	56, 213, 414, 479, 653, 747
SsiI	CCGC	3 cut(s)	425, 520, 688
SspDI	GGCGCC	1 cut(s)	222
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	4 cut(s)	53, 542, 719, 963
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	5 cut(s)	178, 327, 551, 799, 829
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	4 cut(s)	65, 102, 608, 900
TaqI	TCGA	3 cut(s)	70, 199, 349
TaqII	GACCGA	1 cut(s)	612
TasI	AATT	6 cut(s)	56, 213, 414, 479, 653, 747
TfiI	GAWTC	3 cut(s)	5, 189, 761
Tru1I	TTAA	4 cut(s)	60, 114, 132, 750
Tru9I	TTAA	4 cut(s)	60, 114, 132, 750
TscAI	CASTG	5 cut(s)	70, 107, 144, 522, 905
TseFI	GTSAC	2 cut(s)	465, 698
TseI	GCWGC	2 cut(s)	446, 502
Tsp45I	GTSAC	2 cut(s)	465, 698
TspDTI	ATGAA	4 cut(s)	21, 330, 588, 786
TspRI	CASTG	5 cut(s)	70, 107, 144, 522, 905
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	669
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	718
XceI	RCATGY	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	198
XmiI	GTMKAC	3 cut(s)	807, 927, 954
XmnI	GAANNNNTTC	2 cut(s)	161, 193
XspI	CTAG	4 cut(s)	53, 542, 719, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.