Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005281

Physical Location & Seq

Genomic Coordinates Forward (+)

22077067 .. 22093263

Gene Structure 16197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAATGCACGAAATATTGCTATGGTTTTCTCTCCAAACATGACTCAGATGTCGGATCCTCTGACGGCTTTGATGCATGCTGTTCAAGTTATGAATTTGCTTAAGACCCTGATCATGAAAACGCTAAGAGAGCGTGAAGAGACCGATACTGGATCCTATTCGCCAATGTCATCTCGTTCGTCTGATCATCTAACGGATGGAGACTTCGATAGCCAGAAAGAGATGGAAAGTAGCTCTGAGTTGAGTGGACCAACATCAGATTGTGATGAAAACACCCACAACAGCCACAGAAGCGAAAATGGAGATGAAACTCGGTCACTAAGCGAGATAGAAGAATGCTTTTTGAGACAATTGGATGAGATTAAAACTGTCACAAGTAGTTTGGTAATGTTCGATCAACCAACAGGTGAGCTGGATGGGGAGTGTCAGAGTCCTCAAAGTTGCTCGGGCTTCAACGCAGAATCCAGCACATCATTTTCTGATGGCAATGATGTGAATTCGGGTATTAGCTCAAGCGAAGGGGACGAGGTCTCAAGAAAATGTATGATATCCGAGGAAGAACAGGACATAGACGCAGAGAGCTCTTCAACAGCCTGTGTAAACACGGATGAAATGGAGGTGGAGACCAAATTCATAGAGCATGTTTCGGCTTCACCTACTCCGTTTGTGGCGTCCAGTGGATCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD RhoGAP

Protein Analysis

230

Amino Acids

24.98

Weight (kDa)

4.17

Isoelectric Point (pI)

77.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03100
fragaria_vesca	FvH4_2g24600 FvH4_2g24611
malus_domestica	MD03G1274800.v1.1 MD03G1274900.v1.1 MD11G1296900.v1.1
prunus_persica	Prupe.8G251200_v2.0.a1 Prupe.8G251400_v2.0.a1
pyrus_communis	pycom03g21890 pycom11g26120
rosa_chinensis	RchiOBHm_Chr6g0292421 RchiOBHm_Chr6g0292441
rosa_laevigata	RLG00000012024 RLG00000012026
rosa_multiflora	Rmu_sc0001354.1_g000021 Rmu_sc0012226.1_g000005 Rmu_sc0021303.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175060 Rroxscaffold_7G00175080
rosa_rugosa	Rorug06G0226500 Rorug06G0226700
rosa_samantha	Rh6AG339800 Rh6BG347000 Rh6BG347200 Rh6CG353900 Rh6CG354100 Rh6DG339800
rosa_wichuraiana	Rw6G029570 Rw6G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AclWI	GGATC	5 cut(s)	50, 63, 147, 160, 688
AcsI	RAATTY	3 cut(s)	94, 496, 629
AcyI	GRCGYC	1 cut(s)	671
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	86, 454, 588
AluBI	AGCT	4 cut(s)	234, 412, 510, 582
AluI	AGCT	4 cut(s)	234, 412, 510, 582
Alw21I	GWGCWC	1 cut(s)	584
Alw26I	GTCTC	5 cut(s)	134, 195, 340, 535, 617
AlwI	GGATC	5 cut(s)	50, 63, 147, 160, 688
Ama87I	CYCGRG	1 cut(s)	445
ApoI	RAATTY	3 cut(s)	94, 496, 629
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	419, 645
AvaI	CYCGRG	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	248
BamHI	GGATCC	2 cut(s)	55, 152
BanII	GRGCYC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	584
BccI	CCATC	4 cut(s)	191, 217, 410, 476
BceAI	ACGGC	1 cut(s)	81
BclI	TGATCA	2 cut(s)	111, 184
BcoDI	GTCTC	5 cut(s)	134, 195, 340, 535, 617
BfrI	CTTAAG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	57, 154
BmsI	GCATC	1 cut(s)	63
BpuEI	CTTGAG	2 cut(s)	496, 517
BsaHI	GRCGYC	1 cut(s)	671
BsaI	GGTCTC	3 cut(s)	134, 535, 617
BsaJI	CCNNGG	1 cut(s)	552
Bse1I	ACTGG	2 cut(s)	154, 675
Bse3DI	GCAATG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	4 cut(s)	202, 361, 421, 613
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	2 cut(s)	59, 228
BseNI	ACTGG	2 cut(s)	154, 675
BsiHKAI	GWGCWC	1 cut(s)	584
BsiHKCI	CYCGRG	1 cut(s)	445
BslFI	GGGAC	1 cut(s)	536
BsmAI	GTCTC	5 cut(s)	134, 195, 340, 535, 617
BsmFI	GGGAC	1 cut(s)	536
BsmI	GAATGC	2 cut(s)	10, 341
Bso31I	GGTCTC	3 cut(s)	134, 535, 617
BsoBI	CYCGRG	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	584
Bsp143I	GATC	6 cut(s)	55, 111, 152, 184, 394, 680
BspCNI	CTCAG	2 cut(s)	58, 229
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	57, 154
BspPI	GGATC	5 cut(s)	50, 63, 147, 160, 688
BspQI	GCTCTTC	1 cut(s)	589
BspTI	CTTAAG	1 cut(s)	101
BspTNI	GGTCTC	3 cut(s)	134, 535, 617
BsrDI	GCAATG	1 cut(s)	493
BsrI	ACTGG	2 cut(s)	154, 675
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	6 cut(s)	55, 111, 152, 184, 394, 680
BssNI	GRCGYC	1 cut(s)	671
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	2 cut(s)	132, 589
BstACI	GRCGYC	1 cut(s)	671
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	4 cut(s)	45, 125, 237, 320
BstF5I	GGATG	4 cut(s)	202, 361, 421, 613
BstKTI	GATC	6 cut(s)	58, 114, 155, 187, 397, 683
BstMAI	GTCTC	5 cut(s)	134, 195, 340, 535, 617
BstMBI	GATC	6 cut(s)	55, 111, 152, 184, 394, 680
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 291
BstNSI	RCATGY	2 cut(s)	80, 644
BstX2I	RGATCY	2 cut(s)	55, 152
BstYI	RGATCY	2 cut(s)	55, 152
BtsCI	GGATG	4 cut(s)	202, 361, 421, 613
BtsIMutI	CAGTG	1 cut(s)	682
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	2 cut(s)	581, 660
CviAII	CATG	4 cut(s)	40, 77, 115, 641
DdeI	CTNAG	4 cut(s)	45, 125, 237, 320
DpnI	GATC	6 cut(s)	57, 113, 154, 186, 396, 682
DpnII	GATC	6 cut(s)	55, 111, 152, 184, 394, 680
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	132, 589
EarI	CTCTTC	2 cut(s)	132, 589
Ecl136II	GAGCTC	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	584
Eco31I	GGTCTC	3 cut(s)	134, 535, 617
Eco32I	GATATC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	582
EcoRI	GAATTC	1 cut(s)	496
EcoRV	GATATC	1 cut(s)	549
EcoT22I	ATGCAT	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	584
FaeI	CATG	4 cut(s)	43, 80, 118, 644
FaiI	YATR	9 cut(s)	23, 41, 78, 92, 116, 545, 569, 635, 642
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	4 cut(s)	39, 76, 114, 640
FbaI	TGATCA	2 cut(s)	111, 184
FokI	GGATG	4 cut(s)	209, 368, 428, 620
FriOI	GRGCYC	1 cut(s)	584
HgaI	GACGC	2 cut(s)	581, 660
Hin1I	GRCGYC	1 cut(s)	671
Hin1II	CATG	4 cut(s)	43, 80, 118, 644
HinfI	GANTC	3 cut(s)	43, 430, 461
HphI	GGTGA	2 cut(s)	419, 645
Hpy166II	GTNNAC	2 cut(s)	248, 601
Hpy188III	TCNNGA	2 cut(s)	115, 534
Hpy8I	GTNNAC	2 cut(s)	248, 601
HpyAV	CCTTC	1 cut(s)	512
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	2 cut(s)	8, 76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 291
HpyF3I	CTNAG	4 cut(s)	45, 125, 237, 320
Hsp92I	GRCGYC	1 cut(s)	671
Hsp92II	CATG	4 cut(s)	43, 80, 118, 644
Ksp22I	TGATCA	2 cut(s)	111, 184
Kzo9I	GATC	6 cut(s)	55, 111, 152, 184, 394, 680
LguI	GCTCTTC	1 cut(s)	589
LpnPI	CCDG	8 cut(s)	122, 135, 227, 390, 398, 478, 548, 607
LweI	GCATC	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	315, 370
MalI	GATC	6 cut(s)	57, 113, 154, 186, 396, 682
MboI	GATC	6 cut(s)	55, 111, 152, 184, 394, 680
MboII	GAAGA	4 cut(s)	149, 344, 569, 576
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	2 cut(s)	55, 152
MhlI	GDGCHC	1 cut(s)	584
MluCI	AATT	4 cut(s)	94, 350, 496, 629
MlyI	GAGTC	2 cut(s)	37, 439
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	69, 444, 520, 547, 610
Mph1103I	ATGCAT	1 cut(s)	78
MseI	TTAA	2 cut(s)	102, 363
MspCI	CTTAAG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	350
Mva1269I	GAATGC	2 cut(s)	10, 341
MwoI	GCNNNNNNNGC	2 cut(s)	130, 291
NdeII	GATC	6 cut(s)	55, 111, 152, 184, 394, 680
NlaIII	CATG	4 cut(s)	43, 80, 118, 644
NlaIV	GGNNCC	2 cut(s)	57, 154
NmuCI	GTSAC	2 cut(s)	315, 370
NsiI	ATGCAT	1 cut(s)	78
NspI	RCATGY	2 cut(s)	80, 644
PaeI	GCATGC	1 cut(s)	80
PagI	TCATGA	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	589
PctI	GAATGC	2 cut(s)	10, 341
PfeI	GAWTC	1 cut(s)	461
PflFI	GACNNNGTC	1 cut(s)	527
PleI	GAGTC	2 cut(s)	37, 438
PpsI	GAGTC	2 cut(s)	37, 438
Psp124BI	GAGCTC	1 cut(s)	584
PspN4I	GGNNCC	2 cut(s)	57, 154
PspPI	GGNCC	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	55, 152
PsyI	GACNNNGTC	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	584
SapI	GCTCTTC	1 cut(s)	589
SaqAI	TTAA	2 cut(s)	102, 363
Sau3AI	GATC	6 cut(s)	55, 111, 152, 184, 394, 680
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	2 cut(s)	37, 439
SduI	GDGCHC	1 cut(s)	584
SetI	ASST	8 cut(s)	236, 409, 414, 512, 531, 584, 621, 658
SfaNI	GCATC	1 cut(s)	63
SinI	GGWCC	1 cut(s)	248
SmlI	CTYRAG	3 cut(s)	101, 511, 532
SmoI	CTYRAG	3 cut(s)	101, 511, 532
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	4 cut(s)	94, 350, 496, 629
SspI	AATATT	1 cut(s)	16
SstI	GAGCTC	1 cut(s)	584
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	2 cut(s)	207, 393
TaqII	GACCGA	2 cut(s)	158, 303
TasI	AATT	4 cut(s)	94, 350, 496, 629
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	102, 363
Tru9I	TTAA	2 cut(s)	102, 363
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	2 cut(s)	315, 370
Tsp45I	GTSAC	2 cut(s)	315, 370
TspDTI	ATGAA	7 cut(s)	17, 107, 131, 282, 321, 622, 624
TspGWI	ACGGA	3 cut(s)	209, 620, 651
TspRI	CASTG	1 cut(s)	682
Tth111I	GACNNNGTC	1 cut(s)	527
Vha464I	CTTAAG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	3 cut(s)	94, 496, 629
XceI	RCATGY	2 cut(s)	80, 644
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.