Rmu_sc0012226.1_g000005

rho GTPase-activating protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012226.1
Physical Location & Seq
Forward (+)
27215 .. 29748
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012226.1_g000005.1.cds

Sequence Viewer

Length: 1530 bp
atggaagagaaaagaagttggaacttcaaaaaccccaaaacccttaaatgcaagtcaaagcaacccatctcctctgacccaatcacatattcaaaccctctctactcttcacacccaactgaaagcttcgctgggtttcacaattcaaacccagaagaatcacaacccacgcagatgacggggctcgtgatggtgacgagcggcggcggcggcggtggttgcaaagaggggaagaagagctcggaagaagagcaaaaccagctctctctggtggattttctgttggccgcggtgaggaaatccatggtggcctgccgcgtggagcgaggcgaggaggtgatctccgccgtcaataatatggagatcgggtggcccaccaatgtccggcatgtgacgcatgtcacgttcgaccggttcaacgggtttctgggtcttccggtcgagtttgaggtcgatgtcccgggtcgggttccgagtgctagtgcaagtgtgtttggggtctcagcggagtcaatgcagttgtcttttgattcaaaagggaatagcgtccctactattctcttgctgatgcaggagagattatactcacaaggaggattgaaggcagaaggaatattccgtataaacccggagaacagcaaagaggagtttgtgagaaaccagttgaacagaggcattgtgcctgatgacattgacgtccattgcttggcgggcctaatcaaagcctggtttcgagaacttccttcaggagtgctagatggactatctcctgaagaagttcttcagtgcaacacagaagaggaatcctttgagcttgtgaagcagttaaagccaaccgaggctgcattactcaattgggctatcggtctgatggctgatgttgttgaggaagaagaattcaacaaaatgaatgcaagaaatattgctatggtttttgctccaaacatgactcagatgtctgatccactaacggctttgatgcatgcggttcaagtaatgaatttgcttaagaccctgattatgaaaacactaagggaacgtgaagagactgatgaaactggaggatattcacccatgtcatcttgtttatctgatcatcaatcagacgaagacttgtatagtcatccagacatggataccaactctgaattgagaggactaacatcagattatgatgaaaatgcccactatagcaacagcagtgaagatgaagatgaagttcggccactcagtgacatagaagaatgcttcttaagacgattggatgagaagaaaacagccccaaatagcatggtaatgctgaataaaccaacaagtaagtcacttggtgagtatccgagtcctcaaagttgctcgagctttaacatggaatctggcacatcttctgttgatagcaaaaatgggaattctggcttgtgtgcaagttatgggaaagactctggaaaatgcactgatatggagagcccttcagtatcatgctcaaccttgaaggaaatggatatggaggacaatggagtctgtttcaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

56.21

Weight (kDa)

4.68

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 695, 955, 1514
AatII GACGTC 1 cut(s) 699
AccB7I CCANNNNNTGG 1 cut(s) 706
AccBSI CCGCTC 1 cut(s) 201
AccII CGCG 2 cut(s) 290, 318
AclWI GGATC 1 cut(s) 956
AcoI YGGCCR 2 cut(s) 285, 1223
AcsI RAATTY 3 cut(s) 896, 1000, 1405
AcuI CTGAAG 4 cut(s) 729, 767, 792, 1452
AcyI GRCGYC 1 cut(s) 696
AdeI CACNNNGTG 2 cut(s) 1232, 1328
AfiI CCNNNNNNNGG 4 cut(s) 294, 384, 466, 706
AflII CTTAAG 2 cut(s) 1007, 1252
AgeI ACCGGT 1 cut(s) 411
AjnI CCWGG 1 cut(s) 725
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 5 cut(s) 126, 240, 262, 814, 1359
AluI AGCT 5 cut(s) 126, 240, 262, 814, 1359
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 2 cut(s) 505, 1040
AlwI GGATC 1 cut(s) 956
Ama87I CYCGRG 2 cut(s) 460, 1354
AoxI GGCC 5 cut(s) 285, 309, 371, 712, 1223
ApeKI GCWGC 1 cut(s) 842
ApoI RAATTY 3 cut(s) 896, 1000, 1405
AsiGI ACCGGT 1 cut(s) 411
Asp700I GAANNNNTTC 2 cut(s) 777, 780
AspS9I GGNCC 2 cut(s) 372, 712
AsuC2I CCSGG 3 cut(s) 461, 462, 629
AsuHPI GGTGA 5 cut(s) 205, 304, 349, 1062, 1340
AvaI CYCGRG 2 cut(s) 460, 1354
BanII GRGCYC 3 cut(s) 186, 242, 1466
BauI CACGAG 1 cut(s) 185
BbsI GAAGAC 2 cut(s) 425, 1116
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 829
BccI CCATC 4 cut(s) 74, 184, 752, 865
BceAI ACGGC 2 cut(s) 332, 987
BciT130I CCWGG 1 cut(s) 727
BciVI GTATCC 2 cut(s) 1129, 1344
BclI TGATCA 1 cut(s) 1093
BcnI CCSGG 3 cut(s) 461, 462, 629
BcoDI GTCTC 2 cut(s) 505, 1040
BfaI CTAG 3 cut(s) 480, 755, 1528
BfmI CTRYAG 1 cut(s) 1189
BfrI CTTAAG 2 cut(s) 1007, 1252
BfuI GTATCC 2 cut(s) 1129, 1344
BisI GCNGC 7 cut(s) 202, 205, 208, 211, 288, 316, 843
BlsI GCNGC 7 cut(s) 203, 206, 209, 212, 289, 317, 844
Bme1390I CCNGG 4 cut(s) 461, 462, 629, 727
BmeT110I CYCGRG 2 cut(s) 460, 1354
BmgT120I GGNCC 2 cut(s) 372, 712
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 4 cut(s) 461, 462, 629, 727
BmsI GCATC 2 cut(s) 558, 969
BoxI GACNNNNGTC 1 cut(s) 398
BpiI GAAGAC 2 cut(s) 425, 1116
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 1 cut(s) 1080
BpuMI CCSGG 3 cut(s) 461, 462, 629
BsaHI GRCGYC 1 cut(s) 696
BsaI GGTCTC 1 cut(s) 505
BsaJI CCNNGG 4 cut(s) 288, 303, 460, 837
BsaWI WCCGGW 2 cut(s) 411, 436
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 4 cut(s) 294, 384, 466, 706
Bse118I RCCGGY 1 cut(s) 411
Bse1I ACTGG 2 cut(s) 661, 1063
Bse3DI GCAATG 1 cut(s) 700
BseBI CCWGG 1 cut(s) 727
BseDI CCNNGG 4 cut(s) 288, 303, 460, 837
BseGI GGATG 2 cut(s) 1123, 1270
BseLI CCNNNNNNNGG 4 cut(s) 294, 384, 466, 706
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 3 cut(s) 516, 965, 1243
BseNI ACTGG 2 cut(s) 661, 1063
BseRI GAGGAG 3 cut(s) 61, 347, 659
BseXI GCAGC 1 cut(s) 829
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 2 cut(s) 290, 318
Bsh1285I CGRYCG 2 cut(s) 412, 441
BshFI GGCC 5 cut(s) 287, 311, 373, 714, 1225
BshTI ACCGGT 1 cut(s) 411
BsiEI CGRYCG 2 cut(s) 412, 441
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 2 cut(s) 460, 1354
BsiSI CCGG 5 cut(s) 385, 412, 437, 461, 629
BslFI GGGAC 2 cut(s) 443, 533
BslI CCNNNNNNNGG 4 cut(s) 294, 384, 466, 706
BsmAI GTCTC 2 cut(s) 505, 1040
BsmFI GGGAC 2 cut(s) 443, 533
BsmI GAATGC 2 cut(s) 916, 1250
BsnI GGCC 5 cut(s) 287, 311, 373, 714, 1225
Bso31I GGTCTC 1 cut(s) 505
BsoBI CYCGRG 2 cut(s) 460, 1354
Bsp1286I GDGCHC 3 cut(s) 186, 242, 1466
Bsp143I GATC 4 cut(s) 339, 363, 961, 1093
Bsp19I CCATGG 1 cut(s) 303
BspANI GGCC 5 cut(s) 287, 311, 373, 714, 1225
BspCNI CTCAG 3 cut(s) 515, 964, 1242
BspFNI CGCG 2 cut(s) 290, 318
BspLI GGNNCC 1 cut(s) 471
BspPI GGATC 1 cut(s) 956
BspQI GCTCTTC 2 cut(s) 230, 243
BspTI CTTAAG 2 cut(s) 1007, 1252
BspTNI GGTCTC 1 cut(s) 505
BsrBI CCGCTC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 700
BsrFI RCCGGY 1 cut(s) 411
BsrI ACTGG 2 cut(s) 661, 1063
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 4 cut(s) 288, 303, 460, 837
BssMI GATC 4 cut(s) 339, 363, 961, 1093
BssNI GRCGYC 1 cut(s) 696
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 727
Bst6I CTCTTC 5 cut(s) 112, 230, 243, 792, 1038
BstACI GRCGYC 1 cut(s) 696
BstAFI CTTAAG 2 cut(s) 1007, 1252
BstC8I GCNNGC 3 cut(s) 313, 712, 984
BstDEI CTNAG 4 cut(s) 502, 951, 1031, 1229
BstDSI CCRYGG 2 cut(s) 288, 303
BstF5I GGATG 2 cut(s) 1123, 1270
BstFNI CGCG 2 cut(s) 290, 318
BstKTI GATC 4 cut(s) 342, 366, 964, 1096
BstMAI GTCTC 2 cut(s) 505, 1040
BstMBI GATC 4 cut(s) 339, 363, 961, 1093
BstMCI CGRYCG 2 cut(s) 412, 441
BstMWI GCNNNNNNNGC 8 cut(s) 207, 210, 219, 259, 394, 711, 820, 829
BstNI CCWGG 1 cut(s) 727
BstNSI RCATGY 3 cut(s) 392, 401, 986
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 4 cut(s) 459, 460, 627, 725
BstSFI CTRYAG 1 cut(s) 1189
BstUI CGCG 2 cut(s) 290, 318
BstV1I GCAGC 1 cut(s) 829
BstV2I GAAGAC 2 cut(s) 425, 1116
BsuI GTATCC 2 cut(s) 1129, 1344
BsuRI GGCC 5 cut(s) 287, 311, 373, 714, 1225
BtgI CCRYGG 2 cut(s) 288, 303
BtsCI GGATG 2 cut(s) 1123, 1270
BtsI GCAGTG 1 cut(s) 1207
BtsIMutI CAGTG 4 cut(s) 791, 1207, 1237, 1449
Cac8I GCNNGC 3 cut(s) 313, 712, 984
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 2 cut(s) 372, 712
Cfr42I CCGCGG 1 cut(s) 291
Cfr9I CCCGGG 1 cut(s) 460
CseI GACGC 2 cut(s) 403, 535
CspAI ACCGGT 1 cut(s) 411
DdeI CTNAG 4 cut(s) 502, 951, 1031, 1229
DpnI GATC 4 cut(s) 341, 365, 963, 1095
DpnII GATC 4 cut(s) 339, 363, 961, 1093
DraIII CACNNNGTG 2 cut(s) 1232, 1328
DrdI GACNNNNNNGTC 3 cut(s) 695, 955, 1514
DseDI GACNNNNNNGTC 3 cut(s) 695, 955, 1514
EaeI YGGCCR 2 cut(s) 285, 1223
Eam1104I CTCTTC 5 cut(s) 112, 230, 243, 792, 1038
EarI CTCTTC 5 cut(s) 112, 230, 243, 792, 1038
EciI GGCGGA 1 cut(s) 334
Ecl136II GAGCTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 3 cut(s) 186, 242, 1466
Eco31I GGTCTC 1 cut(s) 505
Eco53kI GAGCTC 1 cut(s) 240
Eco57I CTGAAG 4 cut(s) 729, 767, 792, 1452
Eco88I CYCGRG 2 cut(s) 460, 1354
EcoICRI GAGCTC 1 cut(s) 240
EcoRI GAATTC 2 cut(s) 896, 1405
EcoRII CCWGG 1 cut(s) 725
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 984
EcoT38I GRGCYC 3 cut(s) 186, 242, 1466
ErhI CCWWGG 1 cut(s) 303
FalI AAGNNNNNCTT 2 cut(s) 765, 797
FaqI GGGAC 2 cut(s) 443, 533
FauI CCCGC 1 cut(s) 703
FbaI TGATCA 1 cut(s) 1093
Fnu4HI GCNGC 7 cut(s) 202, 205, 208, 211, 288, 316, 843
FokI GGATG 2 cut(s) 1110, 1277
FriOI GRGCYC 3 cut(s) 186, 242, 1466
Fsp4HI GCNGC 7 cut(s) 202, 205, 208, 211, 288, 316, 843
FspBI CTAG 3 cut(s) 480, 755, 1528
GluI GCNGC 7 cut(s) 202, 205, 208, 211, 288, 316, 843
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 1080
HaeIII GGCC 5 cut(s) 287, 311, 373, 714, 1225
HapII CCGG 5 cut(s) 385, 412, 437, 461, 629
HgaI GACGC 2 cut(s) 403, 535
Hin1I GRCGYC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 124
HinfI GANTC 9 cut(s) 158, 509, 530, 803, 949, 1339, 1370, 1436, 1515
HpaII CCGG 5 cut(s) 385, 412, 437, 461, 629
HphI GGTGA 5 cut(s) 205, 304, 349, 1062, 1340
Hpy188III TCNNGA 6 cut(s) 187, 734, 747, 770, 1127, 1440
HpyAV CCTTC 5 cut(s) 595, 602, 753, 1476, 1483
HpyCH4IV ACGT 3 cut(s) 404, 696, 1039
HpyF10VI GCNNNNNNNGC 8 cut(s) 207, 210, 219, 259, 394, 711, 820, 829
HpyF3I CTNAG 4 cut(s) 502, 951, 1031, 1229
HpySE526I ACGT 3 cut(s) 404, 696, 1039
Hsp92I GRCGYC 1 cut(s) 696
Ksp22I TGATCA 1 cut(s) 1093
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 4 cut(s) 339, 363, 961, 1093
LguI GCTCTTC 2 cut(s) 230, 243
LmnI GCTCC 2 cut(s) 322, 943
Lsp1109I GCAGC 1 cut(s) 829
LweI GCATC 2 cut(s) 558, 969
MaeI CTAG 3 cut(s) 480, 755, 1528
MaeII ACGT 3 cut(s) 404, 696, 1039
MaeIII GTNAC 5 cut(s) 193, 391, 400, 1232, 1320
MalI GATC 4 cut(s) 341, 365, 963, 1095
MbiI CCGCTC 1 cut(s) 201
MboI GATC 4 cut(s) 339, 363, 961, 1093
MfeI CAATTG 1 cut(s) 853
MhlI GDGCHC 3 cut(s) 186, 242, 1466
MluCI AATT 6 cut(s) 142, 853, 896, 1000, 1148, 1405
MlyI GAGTC 5 cut(s) 518, 943, 1348, 1430, 1524
Mph1103I ATGCAT 1 cut(s) 984
MroXI GAANNNNTTC 2 cut(s) 777, 780
MseI TTAA 5 cut(s) 45, 827, 1008, 1253, 1362
MslI CAYNNNNRTG 3 cut(s) 173, 1295, 1454
MspA1I CMGCKG 2 cut(s) 290, 506
MspCI CTTAAG 2 cut(s) 1007, 1252
MspI CCGG 5 cut(s) 385, 412, 437, 461, 629
MspR9I CCNGG 4 cut(s) 461, 462, 629, 727
MunI CAATTG 1 cut(s) 853
Mva1269I GAATGC 2 cut(s) 916, 1250
MvaI CCWGG 1 cut(s) 727
MvnI CGCG 2 cut(s) 290, 318
MwoI GCNNNNNNNGC 8 cut(s) 207, 210, 219, 259, 394, 711, 820, 829
NciI CCSGG 3 cut(s) 461, 462, 629
NcoI CCATGG 1 cut(s) 303
NdeII GATC 4 cut(s) 339, 363, 961, 1093
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 5 cut(s) 193, 391, 400, 1232, 1320
NsiI ATGCAT 1 cut(s) 984
NspI RCATGY 3 cut(s) 392, 401, 986
PaeI GCATGC 1 cut(s) 986
PaeR7I CTCGAG 1 cut(s) 1354
PciSI GCTCTTC 2 cut(s) 230, 243
PcsI WCGNNNNNNNCGW 1 cut(s) 401
PctI GAATGC 2 cut(s) 916, 1250
PdmI GAANNNNTTC 2 cut(s) 777, 780
PfeI GAWTC 4 cut(s) 158, 530, 803, 1370
PflMI CCANNNNNTGG 1 cut(s) 706
PinAI ACCGGT 1 cut(s) 411
PkrI GCNGC 7 cut(s) 203, 206, 209, 212, 289, 317, 844
PleI GAGTC 5 cut(s) 517, 943, 1347, 1430, 1523
PpsI GAGTC 5 cut(s) 517, 943, 1347, 1430, 1523
PshAI GACNNNNGTC 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 725
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 725
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 2 cut(s) 372, 712
PspXI VCTCGAGB 1 cut(s) 1354
RseI CAYNNNNRTG 3 cut(s) 173, 1295, 1454
SacI GAGCTC 1 cut(s) 242
SacII CCGCGG 1 cut(s) 291
SapI GCTCTTC 2 cut(s) 230, 243
SaqAI TTAA 5 cut(s) 45, 827, 1008, 1253, 1362
SatI GCNGC 7 cut(s) 202, 205, 208, 211, 288, 316, 843
Sau3AI GATC 4 cut(s) 339, 363, 961, 1093
Sau96I GGNCC 2 cut(s) 372, 712
SchI GAGTC 5 cut(s) 518, 943, 1348, 1430, 1524
ScrFI CCNGG 4 cut(s) 461, 462, 629, 727
SduI GDGCHC 3 cut(s) 186, 242, 1466
SfaNI GCATC 2 cut(s) 558, 969
SfcI CTRYAG 1 cut(s) 1189
Sfr274I CTCGAG 1 cut(s) 1354
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SlaI CTCGAG 1 cut(s) 1354
SmaI CCCGGG 1 cut(s) 462
SmiMI CAYNNNNRTG 3 cut(s) 173, 1295, 1454
SmlI CTYRAG 3 cut(s) 1007, 1252, 1354
SmoI CTYRAG 3 cut(s) 1007, 1252, 1354
SphI GCATGC 1 cut(s) 986
Sse9I AATT 6 cut(s) 142, 853, 896, 1000, 1148, 1405
SspI AATATT 2 cut(s) 615, 922
SspMI CTAG 3 cut(s) 480, 755, 1528
SstI GAGCTC 1 cut(s) 242
StyD4I CCNGG 4 cut(s) 459, 460, 627, 725
StyI CCWWGG 1 cut(s) 303
TaiI ACGT 3 cut(s) 407, 699, 1042
TaqI TCGA 5 cut(s) 408, 441, 453, 733, 1355
TaqII GACCGA 1 cut(s) 854
TasI AATT 6 cut(s) 142, 853, 896, 1000, 1148, 1405
TauI GCSGC 6 cut(s) 204, 207, 210, 213, 290, 318
TfiI GAWTC 4 cut(s) 158, 530, 803, 1370
Tru1I TTAA 5 cut(s) 45, 827, 1008, 1253, 1362
Tru9I TTAA 5 cut(s) 45, 827, 1008, 1253, 1362
TscAI CASTG 4 cut(s) 791, 1207, 1237, 1456
TseFI GTSAC 5 cut(s) 193, 391, 400, 1232, 1320
TseI GCWGC 1 cut(s) 842
Tsp45I GTSAC 5 cut(s) 193, 391, 400, 1232, 1320
TspDTI ATGAA 7 cut(s) 923, 1013, 1037, 1068, 1191, 1224, 1230
TspGWI ACGGA 1 cut(s) 608
TspMI CCCGGG 1 cut(s) 460
TspRI CASTG 4 cut(s) 791, 1207, 1237, 1456
Van91I CCANNNNNTGG 1 cut(s) 706
Vha464I CTTAAG 2 cut(s) 1007, 1252
XapI RAATTY 3 cut(s) 896, 1000, 1405
XceI RCATGY 3 cut(s) 392, 401, 986
XhoI CTCGAG 1 cut(s) 1354
XmaI CCCGGG 1 cut(s) 460
XmnI GAANNNNTTC 2 cut(s) 777, 780
XspI CTAG 3 cut(s) 480, 755, 1528
ZraI GACGTC 1 cut(s) 697
Zsp2I ATGCAT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.