Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002809

Physical Location & Seq

Genomic Coordinates Reverse (-)

23176208 .. 23177222

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g23300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAATGTCGATAGGATGTTCCTTCACAAAGTCTATCATCGCTTCTCCCTCCTCTTCCTCACTACCCCTCACTCACTCCCTTTCAAGCCTCTCCACTTCACATCGGTCCTTTCGCCCGCCCACCTCAGAACAAGGCGCTCCCCATACGACGTTGTAAGGTCCATCAGAACATCCGCCGCCCCCATGGCCACCTCGCGGCTCCGCAACCTCGTCCCCGTCAACGCCGGCGCTTCCGAAGATGCCAGCGATGGCGGAGCCACCAACGGCTCTGTCTCTTCCACTGCAGCTGCCGCTTCACTTGACGGTGAAGAAGATGCGACTTTGGGAGTTAGATACCGTCTTCCTCCGCAAGAAATCAAAGATATTGTGGATGCTCCGCCACTTCCCGCCTTGTCATTCTCACCGCGTAGGGATAAGATACTGTTTCTCAAGCGGAGAGCGTTGCCACCATTGGCAGAACTTGCAAGACCCGAGGAAAAGCTTGCCGGTGTTCGTATTGATGGAAAATGCAATACAAGGACAAGGATGTCGTTTTACACGGGTATTGGGATCCATCAATTTTTGCCTGATGGCACCCTTGGTCCGGAGATAGAGGTGCGTGGATTCCCTGATGGTGCCAATCGATCAATTTTGTTACTTGGTCCCCGGATGGCCGCCATTTGGCCTTCACCATCCGGTTTGATGAGGGGGAAAGTACTACTAGTAAGCTTAAAGTGTGGGTGGCCCAAGTTGAAACAGGGATTGCTAAACCTTTGTTTAAGTCGGAAGAAATATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9

Protein Analysis

260

Amino Acids

28.48

Weight (kDa)

10.27

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47390
fragaria_vesca	FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170
malus_domestica	MD00G1179100.v1.1 MD00G1179200.v1.1 MD03G1294700.v1.1
prunus_persica	Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1
pyrus_communis	pycom03g23300 pycom11g27400
rosa_chinensis	RchiOBHm_Chr5g0055721 RchiOBHm_Chr7g0241201 RchiOBHm_Chr7g0241431
rosa_laevigata	RLG00000000582 RLG00000000586
rosa_multiflora	Rmu_sc0001310.1_g000001 Rmu_sc0001952.1_g000001 Rmu_sc0020071.1_g000001 Rmu_sc0020740.1_g000001 Rmu_sc0030862.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219150
rosa_rugosa	Rorug07G0343800
rosa_samantha	Rh7AG498400 Rh7BG469000 Rh7CG515300 Rh7DG483100
rosa_wichuraiana	Rw7G042040 Rw7G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	526
AccB1I	GGYRCC	2 cut(s)	572, 614
AccII	CGCG	2 cut(s)	196, 406
AccIII	TCCGGA	1 cut(s)	583
AclWI	GGATC	2 cut(s)	544, 557
AcoI	YGGCCR	2 cut(s)	186, 651
AfaI	GTAC	1 cut(s)	696
AfiI	CCNNNNNNNGG	3 cut(s)	195, 583, 660
AgsI	TTSAA	2 cut(s)	85, 733
AhlI	ACTAGT	1 cut(s)	700
AluBI	AGCT	3 cut(s)	287, 481, 708
AluI	AGCT	3 cut(s)	287, 481, 708
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	2 cut(s)	544, 557
Ama87I	CYCGRG	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	583
AoxI	GGCC	4 cut(s)	186, 651, 662, 722
ApeKI	GCWGC	2 cut(s)	284, 287
AspLEI	GCGC	2 cut(s)	138, 230
AspS9I	GGNCC	5 cut(s)	106, 159, 581, 641, 723
AsuC2I	CCSGG	1 cut(s)	646
AsuHPI	GGTGA	3 cut(s)	317, 393, 660
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	4 cut(s)	106, 159, 581, 641
BalI	TGGCCA	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	549
BanI	GGYRCC	2 cut(s)	572, 614
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	274, 296
BccI	CCATC	8 cut(s)	170, 242, 494, 561, 563, 605, 643, 679
BceAI	ACGGC	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	277
BcuI	ACTAGT	1 cut(s)	700
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	1 cut(s)	282
BfoI	RGCGCY	2 cut(s)	139, 231
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	6 cut(s)	177, 197, 285, 288, 291, 654
BlsI	GCNGC	6 cut(s)	178, 198, 286, 289, 292, 655
BmcAI	AGTACT	1 cut(s)	696
Bme1390I	CCNGG	1 cut(s)	646
Bme18I	GGWCC	4 cut(s)	106, 159, 581, 641
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	5 cut(s)	106, 159, 581, 641, 723
BmiI	GGNNCC	6 cut(s)	200, 256, 551, 574, 616, 643
BmrFI	CCNGG	1 cut(s)	646
BmsI	GCATC	3 cut(s)	229, 304, 361
BpiI	GAAGAC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	646
Bsa29I	ATCGAT	1 cut(s)	622
BsaJI	CCNNGG	4 cut(s)	183, 471, 577, 644
BsaWI	WCCGGW	2 cut(s)	583, 674
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 583, 660
Bse118I	RCCGGY	2 cut(s)	224, 485
BseAI	TCCGGA	1 cut(s)	583
BseCI	ATCGAT	1 cut(s)	622
BseDI	CCNNGG	4 cut(s)	183, 471, 577, 644
BseGI	GGATG	6 cut(s)	21, 170, 376, 531, 654, 671
BseLI	CCNNNNNNNGG	3 cut(s)	195, 583, 660
BseMII	CTCAG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	274, 296
Bsh1236I	CGCG	2 cut(s)	196, 406
BshFI	GGCC	4 cut(s)	188, 653, 664, 724
BshNI	GGYRCC	2 cut(s)	572, 614
BshVI	ATCGAT	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	5 cut(s)	225, 486, 584, 646, 675
BslFI	GGGAC	2 cut(s)	197, 627
BslI	CCNNNNNNNGG	3 cut(s)	195, 583, 660
BsmAI	GTCTC	1 cut(s)	277
BsmFI	GGGAC	2 cut(s)	197, 627
BsnI	GGCC	4 cut(s)	188, 653, 664, 724
BsoBI	CYCGRG	1 cut(s)	470
Bsp13I	TCCGGA	1 cut(s)	583
Bsp143I	GATC	2 cut(s)	549, 623
Bsp19I	CCATGG	1 cut(s)	183
BspANI	GGCC	4 cut(s)	188, 653, 664, 724
BspCNI	CTCAG	1 cut(s)	138
BspDI	ATCGAT	1 cut(s)	622
BspEI	TCCGGA	1 cut(s)	583
BspFNI	CGCG	2 cut(s)	196, 406
BspLI	GGNNCC	6 cut(s)	200, 256, 551, 574, 616, 643
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	2 cut(s)	544, 557
BspT107I	GGYRCC	2 cut(s)	572, 614
BsrFI	RCCGGY	2 cut(s)	224, 485
BssAI	RCCGGY	2 cut(s)	224, 485
BssECI	CCNNGG	4 cut(s)	183, 471, 577, 644
BssMI	GATC	2 cut(s)	549, 623
BssT1I	CCWWGG	2 cut(s)	183, 577
Bst4CI	ACNGT	3 cut(s)	305, 338, 423
Bst6I	CTCTTC	2 cut(s)	59, 280
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	4 cut(s)	117, 226, 244, 483
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	6 cut(s)	21, 170, 376, 531, 654, 671
BstFNI	CGCG	2 cut(s)	196, 406
BstH2I	RGCGCY	2 cut(s)	139, 231
BstHHI	GCGC	2 cut(s)	138, 230
BstKTI	GATC	2 cut(s)	552, 626
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	549, 623
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 290, 461
BstSCI	CCNGG	1 cut(s)	644
BstSFI	CTRYAG	1 cut(s)	282
BstUI	CGCG	2 cut(s)	196, 406
BstV1I	GCAGC	2 cut(s)	274, 296
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	549
BstYI	RGATCY	1 cut(s)	549
Bsu15I	ATCGAT	1 cut(s)	622
BsuRI	GGCC	4 cut(s)	188, 653, 664, 724
BsuTUI	ATCGAT	1 cut(s)	622
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	2 cut(s)	23, 261
BtsCI	GGATG	6 cut(s)	21, 170, 376, 531, 654, 671
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	4 cut(s)	117, 226, 244, 483
CfoI	GCGC	2 cut(s)	138, 230
Cfr10I	RCCGGY	2 cut(s)	224, 485
Cfr13I	GGNCC	5 cut(s)	106, 159, 581, 641, 723
ClaI	ATCGAT	1 cut(s)	622
Csp6I	GTAC	1 cut(s)	695
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	1 cut(s)	695
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	551, 625
DpnII	GATC	2 cut(s)	549, 623
DrdI	GACNNNNNNGTC	1 cut(s)	526
DseDI	GACNNNNNNGTC	1 cut(s)	526
EaeI	YGGCCR	2 cut(s)	186, 651
Eam1104I	CTCTTC	2 cut(s)	59, 280
EarI	CTCTTC	2 cut(s)	59, 280
EciI	GGCGGA	3 cut(s)	163, 267, 366
Eco130I	CCWWGG	2 cut(s)	183, 577
Eco47I	GGWCC	4 cut(s)	106, 159, 581, 641
Eco88I	CYCGRG	1 cut(s)	470
EcoT14I	CCWWGG	2 cut(s)	183, 577
ErhI	CCWWGG	2 cut(s)	183, 577
FaeI	CATG	1 cut(s)	187
FaiI	YATR	2 cut(s)	145, 185
FaqI	GGGAC	2 cut(s)	197, 627
FatI	CATG	1 cut(s)	183
FauI	CCCGC	2 cut(s)	124, 394
Fnu4HI	GCNGC	6 cut(s)	177, 197, 285, 288, 291, 654
FokI	GGATG	6 cut(s)	28, 157, 383, 538, 658, 661
Fsp4HI	GCNGC	6 cut(s)	177, 197, 285, 288, 291, 654
FspBI	CTAG	1 cut(s)	701
GlaI	GCGC	2 cut(s)	137, 229
GluI	GCNGC	6 cut(s)	177, 197, 285, 288, 291, 654
HaeII	RGCGCY	2 cut(s)	139, 231
HaeIII	GGCC	4 cut(s)	188, 653, 664, 724
HapII	CCGG	5 cut(s)	225, 486, 584, 646, 675
HhaI	GCGC	2 cut(s)	138, 230
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	2 cut(s)	136, 228
HinP1I	GCGC	2 cut(s)	136, 228
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	2 cut(s)	479, 706
HinfI	GANTC	1 cut(s)	603
HpaII	CCGG	5 cut(s)	225, 486, 584, 646, 675
HphI	GGTGA	3 cut(s)	317, 393, 660
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	4 cut(s)	128, 167, 235, 765
Hpy188III	TCNNGA	1 cut(s)	584
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	32, 675
HpyCH4III	ACNGT	3 cut(s)	305, 338, 423
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	284, 464, 510
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 290, 461
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	2 cut(s)	136, 228
Kpn2I	TCCGGA	1 cut(s)	583
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	549, 623
LmnI	GCTCC	4 cut(s)	143, 204, 254, 379
LpnPI	CCDG	9 cut(s)	238, 256, 499, 579, 597, 621, 659, 688, 722
Lsp1109I	GCAGC	2 cut(s)	274, 296
LweI	GCATC	3 cut(s)	229, 304, 361
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	633
MalI	GATC	2 cut(s)	551, 625
MboI	GATC	2 cut(s)	549, 623
MboII	GAAGA	7 cut(s)	46, 248, 267, 320, 323, 332, 778
MflI	RGATCY	1 cut(s)	549
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	2 cut(s)	557, 627
MluNI	TGGCCA	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	743
Mox20I	TGGCCA	1 cut(s)	188
MreI	CGCCGGCG	1 cut(s)	224
MroI	TCCGGA	1 cut(s)	583
MroNI	GCCGGC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	2 cut(s)	710, 758
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	5 cut(s)	225, 486, 584, 646, 675
MspR9I	CCNGG	1 cut(s)	646
MvnI	CGCG	2 cut(s)	196, 406
MwoI	GCNNNNNNNGC	3 cut(s)	185, 290, 461
NaeI	GCCGGC	1 cut(s)	226
NciI	CCSGG	1 cut(s)	646
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	549, 623
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	6 cut(s)	200, 256, 551, 574, 616, 643
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	603
PkrI	GCNGC	6 cut(s)	178, 198, 286, 289, 292, 655
PspN4I	GGNNCC	6 cut(s)	200, 256, 551, 574, 616, 643
PspPI	GGNCC	5 cut(s)	106, 159, 581, 641, 723
PstI	CTGCAG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	549
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	696
RsaNI	GTAC	1 cut(s)	695
SaqAI	TTAA	2 cut(s)	710, 758
SatI	GCNGC	6 cut(s)	177, 197, 285, 288, 291, 654
Sau3AI	GATC	2 cut(s)	549, 623
Sau96I	GGNCC	5 cut(s)	106, 159, 581, 641, 723
ScaI	AGTACT	1 cut(s)	696
ScrFI	CCNGG	1 cut(s)	646
SfaNI	GCATC	3 cut(s)	229, 304, 361
SfcI	CTRYAG	1 cut(s)	282
SgrAI	CRCCGGYG	1 cut(s)	224
SinI	GGWCC	4 cut(s)	106, 159, 581, 641
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SpeI	ACTAGT	1 cut(s)	700
Sse9I	AATT	2 cut(s)	557, 627
SspI	AATATT	1 cut(s)	773
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	1 cut(s)	644
StyI	CCWWGG	2 cut(s)	183, 577
TaaI	ACNGT	3 cut(s)	305, 338, 423
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	9, 622
TaqII	GACCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	557, 627
TatI	WGTACW	1 cut(s)	694
TauI	GCSGC	4 cut(s)	179, 199, 293, 656
TfiI	GAWTC	1 cut(s)	603
Tru1I	TTAA	2 cut(s)	710, 758
Tru9I	TTAA	2 cut(s)	710, 758
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	2 cut(s)	284, 287
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	4 cut(s)	106, 159, 581, 641
XspI	CTAG	1 cut(s)	701
ZrmI	AGTACT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.