Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020071.1

Orthogroup ID

OG0002809

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1064

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020071.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

acatcagccctgctctggatggctcgaaggtttgctattttatctggaccaactattcctattattggtgagggtgatgatgaagcaaatgataggtatgtggagcaattggtagcaagtgcagaggctgctgtggaggaagtcattcgacgtggagtggctcatccaaagaaaattgctgttgggggacattcatatggggcattcatgactgcaaacctactggcacatgctcctcatctttttgcttgtggaattgctcgttcgggtgcttacaacagaacacttactcctttcggttttcagaatgaggagagaactctttgggaggctactagtacgtatgtggagatgagtcctttcatgtcagctaataaaattaagaagccaatcttgcttatccatggagaggaagacaataat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9

Protein Analysis

141

Amino Acids

15.43

Weight (kDa)

5.92

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47390
fragaria_vesca	FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170
malus_domestica	MD00G1179100.v1.1 MD00G1179200.v1.1 MD03G1294700.v1.1
prunus_persica	Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1
pyrus_communis	pycom03g23300 pycom11g27400
rosa_chinensis	RchiOBHm_Chr5g0055721 RchiOBHm_Chr7g0241201 RchiOBHm_Chr7g0241431
rosa_laevigata	RLG00000000582 RLG00000000586
rosa_multiflora	Rmu_sc0001310.1_g000001 Rmu_sc0001952.1_g000001 Rmu_sc0020071.1_g000001 Rmu_sc0020740.1_g000001 Rmu_sc0030862.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219150
rosa_rugosa	Rorug07G0343800
rosa_samantha	Rh7AG498400 Rh7BG469000 Rh7CG515300 Rh7DG483100
rosa_wichuraiana	Rw7G042040 Rw7G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	3 cut(s)	15, 65, 409
AhlI	ACTAGT	1 cut(s)	335
AjiI	CACGTC	1 cut(s)	152
AloI	GAACNNNNNNTCC	2 cut(s)	274, 306
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	80, 86
AvaII	GGWCC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	13
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	1 cut(s)	336
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 65, 409
Bse1I	ACTGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	2 cut(s)	24, 163
BseLI	CCNNNNNNNGG	3 cut(s)	15, 65, 409
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	2 cut(s)	225, 326
BseXI	GCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	3 cut(s)	15, 65, 409
BsmFI	GGGAC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	203
Bsp19I	CCATGG	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	403
BssT1I	CCWWGG	1 cut(s)	403
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	24, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 394
BstNSI	RCATGY	1 cut(s)	233
BstSNI	TACGTA	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	403
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	24, 163
CaiI	CAGNNNCTG	1 cut(s)	128
CciI	TCATGA	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	4 cut(s)	208, 230, 364, 404
CviJI	RGCY	7 cut(s)	8, 23, 128, 161, 332, 371, 388
CviKI_1	RGCY	7 cut(s)	8, 23, 128, 161, 332, 371, 388
CviQI	GTAC	1 cut(s)	339
Eco105I	TACGTA	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	4 cut(s)	211, 233, 367, 407
FaiI	YATR	8 cut(s)	99, 196, 198, 209, 231, 345, 365, 405
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	4 cut(s)	207, 229, 363, 403
FauNDI	CATATG	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	2 cut(s)	31, 150
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	211, 233, 367, 407
HinfI	GANTC	1 cut(s)	355
HphI	GGTGA	2 cut(s)	80, 86
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	3 cut(s)	16, 45, 208
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	1 cut(s)	21
HpyCH4IV	ACGT	2 cut(s)	151, 341
HpyCH4V	TGCA	2 cut(s)	122, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 394
HpySE526I	ACGT	2 cut(s)	151, 341
Hsp92II	CATG	4 cut(s)	211, 233, 367, 407
LmnI	GCTCC	2 cut(s)	103, 238
LpnPI	CCDG	3 cut(s)	23, 30, 209
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	2 cut(s)	151, 341
MfeI	CAATTG	1 cut(s)	107
MluCI	AATT	4 cut(s)	107, 174, 255, 378
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	7 cut(s)	64, 118, 130, 246, 304, 322, 403
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	128, 394
NcoI	CCATGG	1 cut(s)	403
NdeI	CATATG	1 cut(s)	196
NlaIII	CATG	4 cut(s)	211, 233, 367, 407
NspI	RCATGY	1 cut(s)	233
PagI	TCATGA	1 cut(s)	207
PctI	GAATGC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
Ppu21I	YACGTR	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	1 cut(s)	129
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	364
SetI	ASST	6 cut(s)	32, 98, 154, 222, 344, 373
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	195
SnaBI	TACGTA	1 cut(s)	342
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	4 cut(s)	107, 174, 255, 378
SspMI	CTAG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	403
TaiI	ACGT	2 cut(s)	154, 344
TaqI	TCGA	2 cut(s)	25, 148
TasI	AATT	4 cut(s)	107, 174, 255, 378
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	4 cut(s)	96, 183, 196, 352
VpaK11BI	GGWCC	1 cut(s)	47
XceI	RCATGY	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.