Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001952.1

Orthogroup ID

OG0002809

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2982

Gene Structure 2982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001952.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1498 bp

tccccgcatcctgtttgataggtcatcggaagatgtgtactccgatcctggctcccctatgctgcggagaactcctgctggcacatatgtgcttgcaaaagtgaagaaagaaaatgatgaaggcacttatttactactgaatggaaatggtgctacaccagaggggaatatcccattcctcgatttgtttgacataaatacaggaagtaaagaacgaatatggaagagtgacaaagaaaagtattatgagggtgttgttgccttaatgtctgatgagaaagaaggagatcttcccatcaataccttgaaaatattgacttccaaagagtcaaaaactgaaaacacccaatattatatcctaagctggccggaaaagaaagcatgtcaaattacaaatttccctcatccatatccacagctggcatcattgcagaaagagatggtcaggtaccagagaaaggatggggttcaactaactgcaacactatatcttccaccaggctacgatccatccagagatggccctcttccatgtttggtttggtcttatcctggaaaattcaaaagcaaagatgctgccggacaagttcgtggttctcctaatgaatttgctgggataggtccaacatcagccctgctctggatggctcgaaggtttgccattttatctggaccaactattcctattattggtgagggtgatgatgaagcaaatgataggtatgtggagcaattggtagcaagtgcagaggctgctgtggaggaagtcattcgacgtggagtggctcatccaaagaaaattgctattgggggacattcatatggggcattcatgactgcaaacctactggcacatgctcctcatctttttgcttgtggaattgctcgttcgggtgcttacaacagaacacttactcctttcggttttcagaatgaggagagaactctttgggaggctactagtacttatgtggagatgagtcctttcatgtcagctaataaaattaagaagccagtcttgcttatccatggagaggaagacaataatccagggactttaaccatgcagtccgatcgtttctttaatgctctgaaaggtcatggtgctctttgccgccttgtgattcttccctttgagagccatggctatgcggcaagagagagtatcattcatgtgctatgggaaactggcaggtggttgcaaaaatattgtgtgtcagacacttctgatgtaaatgttaatcaagatgcatgtaaagacaatataggcacaggatctacaaactctgaaagcaaaccagtggctactggcggaggcagtggctcagaattgtcaaattctgagcatgaaggaaatacattgctgatcttggctgctgaggagtataagtttgcacatcattgtcgtgtacaaactatgtcagaacagcatgatgctcgcccctgtgaaagcgcaatagcaatatgcttcctcaggtgcaatttgcatttgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9

Protein Analysis

498

Amino Acids

55.09

Weight (kDa)

6.01

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47390
fragaria_vesca	FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170 FvH4_5g39170
malus_domestica	MD00G1179100.v1.1 MD00G1179200.v1.1 MD03G1294700.v1.1
prunus_persica	Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1 Prupe.8G266800_v2.0.a1
pyrus_communis	pycom03g23300 pycom11g27400
rosa_chinensis	RchiOBHm_Chr5g0055721 RchiOBHm_Chr7g0241201 RchiOBHm_Chr7g0241431
rosa_laevigata	RLG00000000582 RLG00000000586
rosa_multiflora	Rmu_sc0001310.1_g000001 Rmu_sc0001952.1_g000001 Rmu_sc0020071.1_g000001 Rmu_sc0020740.1_g000001 Rmu_sc0030862.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219150
rosa_rugosa	Rorug07G0343800
rosa_samantha	Rh7AG498400 Rh7BG469000 Rh7CG515300 Rh7DG483100
rosa_wichuraiana	Rw7G042040 Rw7G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1183
Acc36I	ACCTGC	1 cut(s)	1183
Acc65I	GGTACC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	448
AciI	CCGC	5 cut(s)	5, 65, 1115, 1152, 1312
AclWI	GGATC	3 cut(s)	39, 501, 1283
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	4 cut(s)	395, 558, 606, 1337
AfaI	GTAC	4 cut(s)	39, 450, 965, 1411
AfiI	CCNNNNNNNGG	4 cut(s)	458, 640, 690, 1034
AgsI	TTSAA	3 cut(s)	308, 471, 563
AhlI	ACTAGT	1 cut(s)	960
AjiI	CACGTC	1 cut(s)	777
AjnI	CCWGG	4 cut(s)	47, 497, 551, 1049
AleI	CACNNNNGTG	1 cut(s)	87
AloI	GAACNNNNNNTCC	2 cut(s)	899, 931
AluBI	AGCT	3 cut(s)	364, 419, 996
AluI	AGCT	3 cut(s)	364, 419, 996
Alw21I	GWGCWC	1 cut(s)	1109
AlwI	GGATC	3 cut(s)	39, 501, 1283
AlwNI	CAGNNNCTG	1 cut(s)	753
AoxI	GGCC	2 cut(s)	366, 521
ApeKI	GCWGC	4 cut(s)	62, 576, 753, 1374
ApoI	RAATTY	4 cut(s)	395, 558, 606, 1337
Asp700I	GAANNNNTTC	1 cut(s)	769
Asp718I	GGTACC	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	1455
AspS9I	GGNCC	3 cut(s)	522, 621, 672
AsuHPI	GGTGA	2 cut(s)	705, 711
AvaII	GGWCC	2 cut(s)	621, 672
AxyI	CCTNAGG	1 cut(s)	1473
BanI	GGYRCC	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	1045
Bbv12I	GWGCWC	1 cut(s)	1109
BbvCI	CCTCAGC	1 cut(s)	1378
BbvI	GCAGC	4 cut(s)	49, 563, 740, 1361
BccI	CCATC	6 cut(s)	303, 434, 456, 513, 518, 638
BcgI	CGANNNNNNTGC	4 cut(s)	1056, 1090, 1419, 1453
BciT130I	CCWGG	4 cut(s)	49, 499, 553, 1051
BcuI	ACTAGT	1 cut(s)	960
BfaI	CTAG	1 cut(s)	961
BfuAI	ACCTGC	1 cut(s)	1183
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	6 cut(s)	63, 577, 754, 1115, 1153, 1375
BlsI	GCNGC	6 cut(s)	64, 578, 755, 1116, 1154, 1376
BmcAI	AGTACT	1 cut(s)	965
Bme1390I	CCNGG	4 cut(s)	49, 499, 553, 1051
Bme18I	GGWCC	2 cut(s)	621, 672
BmgBI	CACGTC	1 cut(s)	777
BmgT120I	GGNCC	3 cut(s)	522, 621, 672
BmiI	GGNNCC	2 cut(s)	53, 450
BmrFI	CCNGG	4 cut(s)	49, 499, 553, 1051
BmsI	GCATC	5 cut(s)	16, 432, 563, 1238, 1424
BpiI	GAAGAC	1 cut(s)	1045
Bpu10I	CCTNAGC	2 cut(s)	360, 1378
BsaJI	CCNNGG	3 cut(s)	1028, 1050, 1142
BsaXI	ACNNNNNCTCC	4 cut(s)	899, 929, 1374, 1404
Bsc4I	CCNNNNNNNGG	4 cut(s)	458, 640, 690, 1034
Bse1I	ACTGG	5 cut(s)	853, 1014, 1193, 1299, 1313
Bse21I	CCTNAGG	1 cut(s)	1473
Bse3DI	GCAATG	2 cut(s)	426, 1359
BseBI	CCWGG	4 cut(s)	49, 499, 553, 1051
BseDI	CCNNGG	3 cut(s)	1028, 1050, 1142
BseGI	GGATG	6 cut(s)	7, 404, 467, 510, 649, 788
BseLI	CCNNNNNNNGG	4 cut(s)	458, 640, 690, 1034
BseMI	GCAATG	2 cut(s)	426, 1359
BseMII	CTCAG	4 cut(s)	1333, 1339, 1369, 1487
BseNI	ACTGG	5 cut(s)	853, 1014, 1193, 1299, 1313
BseRI	GAGGAG	3 cut(s)	850, 951, 1395
BseXI	GCAGC	4 cut(s)	49, 563, 740, 1361
BseYI	CCCAGC	1 cut(s)	612
BsgI	GTGCAG	1 cut(s)	766
Bsh1285I	CGRYCG	1 cut(s)	1076
BshFI	GGCC	2 cut(s)	368, 523
BshNI	GGYRCC	1 cut(s)	448
BsiEI	CGRYCG	1 cut(s)	1076
BsiHKAI	GWGCWC	1 cut(s)	1109
BsiSI	CCGG	2 cut(s)	369, 580
BslFI	GGGAC	2 cut(s)	826, 1067
BslI	CCNNNNNNNGG	4 cut(s)	458, 640, 690, 1034
BsmFI	GGGAC	2 cut(s)	826, 1067
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	2 cut(s)	368, 523
Bsp1286I	GDGCHC	1 cut(s)	1109
Bsp1407I	TGTACA	1 cut(s)	1409
Bsp143I	GATC	6 cut(s)	44, 287, 506, 1073, 1275, 1366
Bsp19I	CCATGG	2 cut(s)	1028, 1142
BspACI	CCGC	5 cut(s)	5, 65, 1115, 1152, 1312
BspANI	GGCC	2 cut(s)	368, 523
BspCNI	CTCAG	4 cut(s)	1334, 1338, 1370, 1486
BspHI	TCATGA	1 cut(s)	832
BspLI	GGNNCC	2 cut(s)	53, 450
BspMI	ACCTGC	1 cut(s)	1183
BspPI	GGATC	3 cut(s)	39, 501, 1283
BspT107I	GGYRCC	1 cut(s)	448
BsrDI	GCAATG	2 cut(s)	426, 1359
BsrGI	TGTACA	1 cut(s)	1409
BsrI	ACTGG	5 cut(s)	853, 1014, 1193, 1299, 1313
BssECI	CCNNGG	3 cut(s)	1028, 1050, 1142
BssMI	GATC	6 cut(s)	44, 287, 506, 1073, 1275, 1366
BssT1I	CCWWGG	2 cut(s)	1028, 1142
Bst2UI	CCWGG	4 cut(s)	49, 499, 553, 1051
Bst6I	CTCTTC	2 cut(s)	219, 532
BstAPI	GCANNNNNTGC	1 cut(s)	753
BstAUI	TGTACA	1 cut(s)	1409
BstC8I	GCNNGC	5 cut(s)	80, 94, 366, 421, 1439
BstDEI	CTNAG	5 cut(s)	360, 1325, 1342, 1378, 1473
BstDSI	CCRYGG	2 cut(s)	1028, 1142
BstF5I	GGATG	6 cut(s)	7, 404, 467, 510, 649, 788
BstHHI	GCGC	1 cut(s)	1455
BstKTI	GATC	6 cut(s)	47, 290, 509, 1076, 1278, 1369
BstMBI	GATC	6 cut(s)	44, 287, 506, 1073, 1275, 1366
BstMCI	CGRYCG	1 cut(s)	1076
BstMWI	GCNNNNNNNGC	2 cut(s)	753, 1019
BstNI	CCWGG	4 cut(s)	49, 499, 553, 1051
BstNSI	RCATGY	3 cut(s)	385, 858, 1255
BstSCI	CCNGG	4 cut(s)	47, 497, 551, 1049
BstV1I	GCAGC	4 cut(s)	49, 563, 740, 1361
BstV2I	GAAGAC	1 cut(s)	1045
BstX2I	RGATCY	2 cut(s)	287, 1275
BstYI	RGATCY	2 cut(s)	287, 1275
Bsu36I	CCTNAGG	1 cut(s)	1473
BsuRI	GGCC	2 cut(s)	368, 523
BtgI	CCRYGG	2 cut(s)	1028, 1142
BtrI	CACGTC	1 cut(s)	777
BtsCI	GGATG	6 cut(s)	7, 404, 467, 510, 649, 788
BtsI	GCAGTG	1 cut(s)	1325
BtsIMutI	CAGTG	2 cut(s)	1306, 1325
BveI	ACCTGC	1 cut(s)	1183
Cac8I	GCNNGC	5 cut(s)	80, 94, 366, 421, 1439
CaiI	CAGNNNCTG	1 cut(s)	753
CciI	TCATGA	1 cut(s)	832
CfoI	GCGC	1 cut(s)	1455
Cfr13I	GGNCC	3 cut(s)	522, 621, 672
Csp6I	GTAC	4 cut(s)	38, 449, 964, 1410
CviQI	GTAC	4 cut(s)	38, 449, 964, 1410
DdeI	CTNAG	5 cut(s)	360, 1325, 1342, 1378, 1473
DpnI	GATC	6 cut(s)	46, 289, 508, 1075, 1277, 1368
DpnII	GATC	6 cut(s)	44, 287, 506, 1073, 1275, 1366
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	219, 532
EarI	CTCTTC	2 cut(s)	219, 532
EciI	GGCGGA	1 cut(s)	1327
Eco130I	CCWWGG	2 cut(s)	1028, 1142
Eco47I	GGWCC	2 cut(s)	621, 672
Eco81I	CCTNAGG	1 cut(s)	1473
EcoRII	CCWGG	4 cut(s)	47, 497, 551, 1049
EcoT14I	CCWWGG	2 cut(s)	1028, 1142
EcoT22I	ATGCAT	1 cut(s)	1253
ErhI	CCWWGG	2 cut(s)	1028, 1142
FalI	AAGNNNNNCTT	4 cut(s)	274, 306, 1002, 1034
FaqI	GGGAC	2 cut(s)	826, 1067
FauI	CCCGC	1 cut(s)	12
FauNDI	CATATG	2 cut(s)	86, 821
Fnu4HI	GCNGC	6 cut(s)	63, 577, 754, 1115, 1153, 1375
FokI	GGATG	5 cut(s)	391, 474, 497, 656, 775
Fsp4HI	GCNGC	6 cut(s)	63, 577, 754, 1115, 1153, 1375
FspBI	CTAG	1 cut(s)	961
GlaI	GCGC	1 cut(s)	1454
GluI	GCNGC	6 cut(s)	63, 577, 754, 1115, 1153, 1375
GsaI	CCCAGC	1 cut(s)	616
HaeIII	GGCC	2 cut(s)	368, 523
HapII	CCGG	2 cut(s)	369, 580
HhaI	GCGC	1 cut(s)	1455
Hin6I	GCGC	1 cut(s)	1453
HinP1I	GCGC	1 cut(s)	1453
HinfI	GANTC	3 cut(s)	327, 980, 1124
HpaII	CCGG	2 cut(s)	369, 580
HphI	GGTGA	2 cut(s)	705, 711
Hpy166II	GTNNAC	2 cut(s)	38, 1410
Hpy188III	TCNNGA	5 cut(s)	514, 641, 670, 833, 1245
Hpy8I	GTNNAC	2 cut(s)	38, 1410
Hpy99I	CGWCG	1 cut(s)	778
HpyAV	CCTTC	4 cut(s)	114, 276, 646, 1344
HpyCH4IV	ACGT	1 cut(s)	776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	753, 1019
HpyF3I	CTNAG	5 cut(s)	360, 1325, 1342, 1378, 1473
HpySE526I	ACGT	1 cut(s)	776
HspAI	GCGC	1 cut(s)	1453
KpnI	GGTACC	1 cut(s)	452
Kzo9I	GATC	6 cut(s)	44, 287, 506, 1073, 1275, 1366
LmnI	GCTCC	3 cut(s)	57, 728, 863
Lsp1109I	GCAGC	4 cut(s)	49, 563, 740, 1361
LweI	GCATC	5 cut(s)	16, 432, 563, 1238, 1424
MaeI	CTAG	1 cut(s)	961
MaeII	ACGT	1 cut(s)	776
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	6 cut(s)	46, 289, 508, 1075, 1277, 1368
MboI	GATC	6 cut(s)	44, 287, 506, 1073, 1275, 1366
MboII	GAAGA	8 cut(s)	42, 116, 236, 282, 483, 519, 1050, 1119
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	2 cut(s)	287, 1275
MhlI	GDGCHC	1 cut(s)	1109
MlyI	GAGTC	2 cut(s)	336, 989
MmeI	TCCRAC	1 cut(s)	648
Mph1103I	ATGCAT	1 cut(s)	1253
MroXI	GAANNNNTTC	1 cut(s)	769
MseI	TTAA	5 cut(s)	264, 1006, 1059, 1084, 1240
MslI	CAYNNNNRTG	5 cut(s)	87, 820, 1147, 1173, 1405
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	369, 580
MspR9I	CCNGG	4 cut(s)	49, 499, 553, 1051
MunI	CAATTG	1 cut(s)	732
Mva1269I	GAATGC	1 cut(s)	828
MvaI	CCWGG	4 cut(s)	49, 499, 553, 1051
MwoI	GCNNNNNNNGC	2 cut(s)	753, 1019
NcoI	CCATGG	2 cut(s)	1028, 1142
NdeI	CATATG	2 cut(s)	86, 821
NdeII	GATC	6 cut(s)	44, 287, 506, 1073, 1275, 1366
NlaIV	GGNNCC	2 cut(s)	53, 450
NmuCI	GTSAC	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	1253
NspI	RCATGY	3 cut(s)	385, 858, 1255
OliI	CACNNNNGTG	1 cut(s)	87
PagI	TCATGA	1 cut(s)	832
PaqCI	CACCTGC	1 cut(s)	1183
PctI	GAATGC	1 cut(s)	828
PdmI	GAANNNNTTC	1 cut(s)	769
PfeI	GAWTC	1 cut(s)	1124
PfoI	TCCNGGA	1 cut(s)	551
PkrI	GCNGC	6 cut(s)	64, 578, 755, 1116, 1154, 1376
Ple19I	CGATCG	1 cut(s)	1076
PleI	GAGTC	2 cut(s)	335, 988
PpsI	GAGTC	2 cut(s)	335, 988
Psp6I	CCWGG	4 cut(s)	47, 497, 551, 1049
PspFI	CCCAGC	1 cut(s)	612
PspGI	CCWGG	4 cut(s)	47, 497, 551, 1049
PspN4I	GGNNCC	2 cut(s)	53, 450
PspPI	GGNCC	3 cut(s)	522, 621, 672
PstNI	CAGNNNCTG	1 cut(s)	753
PsuI	RGATCY	2 cut(s)	287, 1275
PvuI	CGATCG	1 cut(s)	1076
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	4 cut(s)	39, 450, 965, 1411
RsaNI	GTAC	4 cut(s)	38, 449, 964, 1410
RseI	CAYNNNNRTG	5 cut(s)	87, 820, 1147, 1173, 1405
SaqAI	TTAA	5 cut(s)	264, 1006, 1059, 1084, 1240
SatI	GCNGC	6 cut(s)	63, 577, 754, 1115, 1153, 1375
Sau3AI	GATC	6 cut(s)	44, 287, 506, 1073, 1275, 1366
Sau96I	GGNCC	3 cut(s)	522, 621, 672
ScaI	AGTACT	1 cut(s)	965
SchI	GAGTC	2 cut(s)	336, 989
ScrFI	CCNGG	4 cut(s)	49, 499, 553, 1051
SduI	GDGCHC	1 cut(s)	1109
SfaNI	GCATC	5 cut(s)	16, 432, 563, 1238, 1424
SinI	GGWCC	2 cut(s)	621, 672
SmiMI	CAYNNNNRTG	5 cut(s)	87, 820, 1147, 1173, 1405
SpeI	ACTAGT	1 cut(s)	960
SsiI	CCGC	5 cut(s)	5, 65, 1115, 1152, 1312
SspI	AATATT	3 cut(s)	313, 351, 1209
SspMI	CTAG	1 cut(s)	961
StyD4I	CCNGG	4 cut(s)	47, 497, 551, 1049
StyI	CCWWGG	2 cut(s)	1028, 1142
TaiI	ACGT	1 cut(s)	779
TaqI	TCGA	3 cut(s)	181, 650, 773
TatI	WGTACW	3 cut(s)	37, 963, 1409
TauI	GCSGC	2 cut(s)	1117, 1155
TfiI	GAWTC	1 cut(s)	1124
Tru1I	TTAA	5 cut(s)	264, 1006, 1059, 1084, 1240
Tru9I	TTAA	5 cut(s)	264, 1006, 1059, 1084, 1240
TscAI	CASTG	2 cut(s)	1306, 1325
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	4 cut(s)	62, 576, 753, 1374
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	8 cut(s)	133, 619, 721, 808, 821, 977, 1161, 1363
TspRI	CASTG	2 cut(s)	1306, 1325
VpaK11BI	GGWCC	2 cut(s)	621, 672
XapI	RAATTY	4 cut(s)	395, 558, 606, 1337
XceI	RCATGY	3 cut(s)	385, 858, 1255
XcmI	CCANNNNNNNNNTGG	2 cut(s)	459, 538
XmnI	GAANNNNTTC	1 cut(s)	769
XspI	CTAG	1 cut(s)	961
ZrmI	AGTACT	1 cut(s)	965
Zsp2I	ATGCAT	1 cut(s)	1253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.