Rw7G042040

Glutamyl endopeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002809
Physical Location & Seq
Reverse (-)
65686048 .. 65687803
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G042040.1

Sequence Viewer

Length: 555 bp
ATGACTGCAAACCTACTGGCACAAGCTCCTCATCTTTTTGCTTGTGGAATTGCTCGTTTGGGTGCTTACAACAGAACACTTACTCCTTTCGGTTTTCAGAATGAGGAGAGAACTCTTTGGGAGGCTGCTAGTACTTATGTGGAGATGAGTCCTTTCATGTCAGCTAATAAAATTAAGAAGCCAATCTTGCTTACCCATGGAGAGGAAGACAATAATCCAGGGACTTTAACCATGCAGTCCGATCGTTTCTTTAATGCTCTGAAAGGTCATGGTGCTCTTTGCCGCCTTGTGATTCTTCCCTTTGAGAGCCATGGCTATGCTGCAAGAGAGAGTATCATGCATGTGCTATGGGAAACTGACAGGTGGTTGCAAAAATATTGCGTGTCAGACACTTCTGATGTAAATGTTGATCAAGATGCATGTAAAGACAATATAGGCACAGGATCTACAAATTCTGAAAGCAAAGCAGTGGCTACTGGCGGAGGCAGTGGCTCAGAAGTGTCAAATTCTGAGCATGAAGGAGTTGACTCTTTGCCGAGGTCATTGTTATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S9

Protein Analysis

184

Amino Acids

20.17

Weight (kDa)

5.31

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S9 PF00326 1 - 126 2.1e-13 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 283, 480
AclWI GGATC 1 cut(s) 451
AcsI RAATTY 2 cut(s) 451, 505
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 202
AjnI CCWGG 1 cut(s) 217
AloI GAACNNNNNNTCC 2 cut(s) 67, 99
AluBI AGCT 2 cut(s) 26, 164
AluI AGCT 2 cut(s) 26, 164
Alw21I GWGCWC 1 cut(s) 277
AlwI GGATC 1 cut(s) 451
ApeKI GCWGC 2 cut(s) 125, 320
ApoI RAATTY 2 cut(s) 451, 505
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 112, 307
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 1 cut(s) 219
BclI TGATCA 1 cut(s) 409
BfaI CTAG 1 cut(s) 129
BisI GCNGC 3 cut(s) 126, 283, 321
BlsI GCNGC 3 cut(s) 127, 284, 322
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 213
BsaJI CCNNGG 4 cut(s) 196, 218, 310, 536
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse1I ACTGG 2 cut(s) 21, 481
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 4 cut(s) 196, 218, 310, 536
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 501, 507
BseNI ACTGG 2 cut(s) 21, 481
BseRI GAGGAG 2 cut(s) 18, 119
BseXI GCAGC 2 cut(s) 112, 307
Bsh1285I CGRYCG 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 277
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 3 cut(s) 241, 409, 443
Bsp19I CCATGG 2 cut(s) 196, 310
BspACI CCGC 2 cut(s) 283, 480
BspCNI CTCAG 2 cut(s) 502, 506
BspPI GGATC 1 cut(s) 451
BsrI ACTGG 2 cut(s) 21, 481
BssECI CCNNGG 4 cut(s) 196, 218, 310, 536
BssMI GATC 3 cut(s) 241, 409, 443
BssT1I CCWWGG 2 cut(s) 196, 310
Bst2UI CCWGG 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 493, 510
BstDSI CCRYGG 2 cut(s) 196, 310
BstKTI GATC 3 cut(s) 244, 412, 446
BstMBI GATC 3 cut(s) 241, 409, 443
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 2 cut(s) 344, 423
BstSCI CCNGG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 112, 307
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BtgI CCRYGG 2 cut(s) 196, 310
BtsI GCAGTG 2 cut(s) 474, 493
BtsIMutI CAGTG 2 cut(s) 474, 493
Csp6I GTAC 1 cut(s) 132
CviAII CATG 9 cut(s) 157, 197, 232, 269, 311, 337, 341, 420, 515
CviJI RGCY 8 cut(s) 26, 125, 164, 181, 309, 315, 473, 492
CviKI_1 RGCY 8 cut(s) 26, 125, 164, 181, 309, 315, 473, 492
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 2 cut(s) 493, 510
DpnI GATC 3 cut(s) 243, 411, 445
DpnII GATC 3 cut(s) 241, 409, 443
EciI GGCGGA 1 cut(s) 495
Eco130I CCWWGG 2 cut(s) 196, 310
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 2 cut(s) 196, 310
EcoT22I ATGCAT 2 cut(s) 342, 421
ErhI CCWWGG 2 cut(s) 196, 310
FaeI CATG 9 cut(s) 160, 200, 235, 272, 314, 340, 344, 423, 518
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FaqI GGGAC 1 cut(s) 235
FatI CATG 9 cut(s) 156, 196, 231, 268, 310, 336, 340, 419, 514
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 126, 283, 321
Fsp4HI GCNGC 3 cut(s) 126, 283, 321
FspBI CTAG 1 cut(s) 129
GluI GCNGC 3 cut(s) 126, 283, 321
Hin1II CATG 9 cut(s) 160, 200, 235, 272, 314, 340, 344, 423, 518
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 3 cut(s) 148, 292, 527
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 8 cut(s) 99, 241, 261, 388, 397, 457, 496, 511
Hpy188III TCNNGA 1 cut(s) 413
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 1 cut(s) 512
HpyCH4V TGCA 6 cut(s) 8, 235, 323, 340, 370, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 2 cut(s) 493, 510
Hsp92II CATG 9 cut(s) 160, 200, 235, 272, 314, 340, 344, 423, 518
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 241, 409, 443
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 6 cut(s) 2, 204, 231, 346, 426, 462
Lsp1109I GCAGC 2 cut(s) 112, 307
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 129
MalI GATC 3 cut(s) 243, 411, 445
MboI GATC 3 cut(s) 241, 409, 443
MboII GAAGA 2 cut(s) 218, 287
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 4 cut(s) 48, 171, 451, 505
MlyI GAGTC 2 cut(s) 157, 521
MnlI CCTC 6 cut(s) 39, 97, 115, 196, 476, 531
Mph1103I ATGCAT 2 cut(s) 342, 421
MseI TTAA 3 cut(s) 174, 227, 252
MslI CAYNNNNRTG 3 cut(s) 315, 341, 547
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 187
NcoI CCATGG 2 cut(s) 196, 310
NdeII GATC 3 cut(s) 241, 409, 443
NlaIII CATG 9 cut(s) 160, 200, 235, 272, 314, 340, 344, 423, 518
NsiI ATGCAT 2 cut(s) 342, 421
NspI RCATGY 2 cut(s) 344, 423
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 3 cut(s) 127, 284, 322
Ple19I CGATCG 1 cut(s) 244
PleI GAGTC 2 cut(s) 156, 521
PpsI GAGTC 2 cut(s) 156, 521
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 443
PvuI CGATCG 1 cut(s) 244
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 3 cut(s) 315, 341, 547
SaqAI TTAA 3 cut(s) 174, 227, 252
SatI GCNGC 3 cut(s) 126, 283, 321
Sau3AI GATC 3 cut(s) 241, 409, 443
ScaI AGTACT 1 cut(s) 133
SchI GAGTC 2 cut(s) 157, 521
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 277
SetI ASST 6 cut(s) 15, 28, 166, 268, 365, 542
SfaNI GCATC 1 cut(s) 406
SmiMI CAYNNNNRTG 3 cut(s) 315, 341, 547
Sse9I AATT 4 cut(s) 48, 171, 451, 505
SsiI CCGC 2 cut(s) 283, 480
SspI AATATT 1 cut(s) 377
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 2 cut(s) 196, 310
TasI AATT 4 cut(s) 48, 171, 451, 505
TatI WGTACW 1 cut(s) 131
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 3 cut(s) 174, 227, 252
Tru9I TTAA 3 cut(s) 174, 227, 252
TscAI CASTG 2 cut(s) 474, 493
TseI GCWGC 2 cut(s) 125, 320
TspDTI ATGAA 2 cut(s) 145, 531
TspRI CASTG 2 cut(s) 474, 493
XapI RAATTY 2 cut(s) 451, 505
XceI RCATGY 2 cut(s) 344, 423
XspI CTAG 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 133
Zsp2I ATGCAT 2 cut(s) 342, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.