Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003422

Physical Location & Seq

Genomic Coordinates Reverse (-)

4470127 .. 4470857

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGATCAAAATTGACGTCTTAAACACTCACAAAGAGCAGAAAACTAAACAAACTGATGGATCCTTTTCTCTCCTATATATATATGATTCAGGACTTTGTACAGCATCAATTGCGCTCTTCACCGACCTCGAAATAGTGATTGAAATGATCTCCATCGGCACGCTCTTGGTGTTCTACCTTGTGGCCAATGCTCTCATTTACCGGCGATACGTGATCATCAGCAAAAACTCTCCATTTCAAACTCTCTTGTTCCTCTTCCTCCTCTCGTCTAGTGCTATTGGCTTTTCCATGTCATTGACGTTTAAGCGACAACGGTGGGGACTACCACTTTTCGGGTTGTCTACGATCATCATCATTTCCTTCTTCAACTACGCAGTTCCTTGTGTTCGCCATCATATAGGGTGGTCAATGCCATTCATGCCATGGCCTGCTGCACTGGCCATCTTCCTTAATGTGTTCCTCATGACCACGCTGAAGAAGTTCTCGTTCGAACGGTTTGCTTTATGGGCATGTTTCATAGCATTGTTCTATCTGTTCTATGGTGTTCACTCAACTTATCAGGCAGAGAAGATGGGGAGCAGTGAGGATAAAGTGAATCCAAGCTCAGCTGTGCAGCAAACTAAGCTAGACAATATGCAAGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

216

Amino Acids

24.56

Weight (kDa)

9.11

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10600 AT3G10600 AT5G04770 AT5G04770 AT5G04770
fragaria_vesca	FvH4_5g20380 FvH4_5g20380 FvH4_7g05050
malus_domestica	MD02G1259000.v1.1 MD04G1055400.v1.1 MD06G1047000.v1.1
prunus_persica	Prupe.2G071100_v2.0.a1 Prupe.2G071100_v2.0.a1 Prupe.5G055200_v2.0.a1
pyrus_communis	pycom02g22020 pycom04g04840
rosa_chinensis	RchiOBHm_Chr1g0331741 RchiOBHm_Chr7g0205641
rosa_laevigata	RLG00000003368 RLG00000029718
rosa_multiflora	Rmu_sc0006124.1_g000001 Rmu_ssc0000089.1_g000013
rosa_roxburghii	Rroxscaffold_3G00252110 Rroxscaffold_4G00318820
rosa_rugosa	Rorug01G0095900 Rorug01G0096000 Rorug07G0092300 Rorug07G0092300
rosa_samantha	Rh1BG091400 Rh1DG125300 Rh7AG223200 Rh7BG218200 Rh7CG236500 Rh7DG230200
rosa_wichuraiana	Rw1G009690 Rw7G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	341
AclWI	GGATC	2 cut(s)	54, 67
AcoI	YGGCCR	2 cut(s)	183, 438
AcuI	CTGAAG	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	2 cut(s)	100, 642
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	3 cut(s)	143, 239, 367
AluBI	AGCT	3 cut(s)	603, 608, 625
AluI	AGCT	3 cut(s)	603, 608, 625
AlwI	GGATC	2 cut(s)	54, 67
AoxI	GGCC	3 cut(s)	183, 425, 438
ApeKI	GCWGC	2 cut(s)	431, 613
ArsI	GACNNNNNNTTYG	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	112
AsuII	TTCGAA	1 cut(s)	489
BalI	TGGCCA	2 cut(s)	185, 440
BamHI	GGATCC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	418, 625
BccI	CCATC	5 cut(s)	50, 161, 399, 449, 565
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BclI	TGATCA	2 cut(s)	3, 213
BfaI	CTAG	2 cut(s)	270, 626
BisI	GCNGC	2 cut(s)	432, 614
BlpI	GCTNAGC	1 cut(s)	604
BlsI	GCNGC	2 cut(s)	433, 615
BmcAI	AGTACT	1 cut(s)	642
BmiI	GGNNCC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	604
Bpu14I	TTCGAA	1 cut(s)	489
BsaAI	YACGTR	1 cut(s)	211
BsaBI	GATNNNNATC	2 cut(s)	152, 350
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	441
Bse8I	GATNNNNATC	2 cut(s)	152, 350
BseDI	CCNNGG	1 cut(s)	422
BseJI	GATNNNNATC	2 cut(s)	152, 350
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	418, 625
BsgI	GTGCAG	2 cut(s)	417, 632
BshFI	GGCC	3 cut(s)	185, 427, 440
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	185, 427, 440
Bsp119I	TTCGAA	1 cut(s)	489
Bsp1407I	TGTACA	1 cut(s)	98
Bsp143I	GATC	5 cut(s)	3, 59, 147, 213, 345
Bsp1720I	GCTNAGC	1 cut(s)	604
Bsp19I	CCATGG	1 cut(s)	422
BspANI	GGCC	3 cut(s)	185, 427, 440
BspCNI	CTCAG	1 cut(s)	617
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	54, 67
BspQI	GCTCTTC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	441
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	5 cut(s)	3, 59, 147, 213, 345
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	315, 495
Bst6I	CTCTTC	2 cut(s)	122, 260
BstACI	GRCGYC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	161, 429
BstDEI	CTNAG	2 cut(s)	604, 621
BstDSI	CCRYGG	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	5 cut(s)	6, 62, 150, 216, 348
BstMBI	GATC	5 cut(s)	3, 59, 147, 213, 345
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 418, 437, 506, 622
BstNSI	RCATGY	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	418, 625
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	3 cut(s)	185, 427, 440
BtgI	CCRYGG	1 cut(s)	422
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	2 cut(s)	434, 586
Cac8I	GCNNGC	2 cut(s)	161, 429
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	99, 641
CviAII	CATG	5 cut(s)	289, 418, 423, 463, 510
CviJI	RGCY	7 cut(s)	185, 282, 427, 440, 603, 608, 625
CviKI_1	RGCY	7 cut(s)	185, 282, 427, 440, 603, 608, 625
CviQI	GTAC	2 cut(s)	99, 641
DdeI	CTNAG	2 cut(s)	604, 621
DpnI	GATC	5 cut(s)	5, 61, 149, 215, 347
DpnII	GATC	5 cut(s)	3, 59, 147, 213, 345
EaeI	YGGCCR	2 cut(s)	183, 438
Eam1104I	CTCTTC	2 cut(s)	122, 260
EarI	CTCTTC	2 cut(s)	122, 260
Eco130I	CCWWGG	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	5 cut(s)	292, 421, 426, 466, 513
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	5 cut(s)	288, 417, 422, 462, 509
FbaI	TGATCA	2 cut(s)	3, 213
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	2 cut(s)	432, 614
Fsp4HI	GCNGC	2 cut(s)	432, 614
FspBI	CTAG	2 cut(s)	270, 626
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	2 cut(s)	432, 614
HaeIII	GGCC	3 cut(s)	185, 427, 440
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	5 cut(s)	292, 421, 426, 466, 513
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	2 cut(s)	86, 595
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	342, 547
Hpy188III	TCNNGA	2 cut(s)	90, 463
Hpy8I	GTNNAC	2 cut(s)	342, 547
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	2 cut(s)	315, 495
HpyCH4IV	ACGT	3 cut(s)	15, 210, 299
HpyCH4V	TGCA	3 cut(s)	434, 613, 637
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 418, 437, 506, 622
HpyF3I	CTNAG	2 cut(s)	604, 621
HpySE526I	ACGT	3 cut(s)	15, 210, 299
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	5 cut(s)	292, 421, 426, 466, 513
HspAI	GCGC	1 cut(s)	113
Ksp22I	TGATCA	2 cut(s)	3, 213
Kzo9I	GATC	5 cut(s)	3, 59, 147, 213, 345
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	576
LpnPI	CCDG	5 cut(s)	75, 215, 422, 441, 545
Lsp1109I	GCAGC	2 cut(s)	418, 625
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	2 cut(s)	270, 626
MaeII	ACGT	3 cut(s)	15, 210, 299
MalI	GATC	5 cut(s)	5, 61, 149, 215, 347
MboI	GATC	5 cut(s)	3, 59, 147, 213, 345
MboII	GAAGA	6 cut(s)	109, 247, 355, 436, 487, 580
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	1 cut(s)	59
MlsI	TGGCCA	2 cut(s)	185, 440
MluCI	AATT	2 cut(s)	9, 108
MluNI	TGGCCA	2 cut(s)	185, 440
MnlI	CCTC	6 cut(s)	137, 263, 269, 272, 470, 577
Mox20I	TGGCCA	2 cut(s)	185, 440
MroXI	GAANNNNTTC	1 cut(s)	479
MscI	TGGCCA	2 cut(s)	185, 440
MseI	TTAA	3 cut(s)	20, 303, 450
Msp20I	TGGCCA	2 cut(s)	185, 440
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	202
MunI	CAATTG	1 cut(s)	108
MwoI	GCNNNNNNNGC	5 cut(s)	110, 418, 437, 506, 622
NcoI	CCATGG	1 cut(s)	422
NdeII	GATC	5 cut(s)	3, 59, 147, 213, 345
NlaIII	CATG	5 cut(s)	292, 421, 426, 466, 513
NlaIV	GGNNCC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	513
NspV	TTCGAA	1 cut(s)	489
PagI	TCATGA	1 cut(s)	462
PciSI	GCTCTTC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	86, 595
PkrI	GCNGC	2 cut(s)	433, 615
Ppu21I	YACGTR	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	2 cut(s)	100, 642
RsaNI	GTAC	2 cut(s)	99, 641
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	20, 303, 450
SatI	GCNGC	2 cut(s)	432, 614
Sau3AI	GATC	5 cut(s)	3, 59, 147, 213, 345
ScaI	AGTACT	1 cut(s)	642
SetI	ASST	8 cut(s)	18, 129, 180, 213, 302, 605, 610, 627
SfaNI	GCATC	1 cut(s)	113
SfuI	TTCGAA	1 cut(s)	489
Sse9I	AATT	2 cut(s)	9, 108
SspMI	CTAG	2 cut(s)	270, 626
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	2 cut(s)	315, 495
TaiI	ACGT	3 cut(s)	18, 213, 302
TaqI	TCGA	2 cut(s)	129, 489
TasI	AATT	2 cut(s)	9, 108
TatI	WGTACW	2 cut(s)	98, 640
TfiI	GAWTC	2 cut(s)	86, 595
Tru1I	TTAA	3 cut(s)	20, 303, 450
Tru9I	TTAA	3 cut(s)	20, 303, 450
TscAI	CASTG	2 cut(s)	441, 586
TseI	GCWGC	2 cut(s)	431, 613
TspDTI	ATGAA	2 cut(s)	406, 505
TspRI	CASTG	2 cut(s)	441, 586
XceI	RCATGY	1 cut(s)	513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	2 cut(s)	270, 626
ZraI	GACGTC	1 cut(s)	16
ZrmI	AGTACT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.