Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003422

Physical Location & Seq

Genomic Coordinates Forward (+)

22798818 .. 22807803

Gene Structure 8986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG230200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGAAGCCAAAACACTCCAGTATAGTTTTGCAAACATGGCTTCCACCACCACCACAACTCAAACTCCTCCCAACAACACAAACACCAGTCTTTGCTTCTCCAACTATCTCCAATCCCTGTCCCAAACACCCCACAGGCTCAGAAAGAGAATGCTTGCCACCTGGACCCCAGACCAGGAGCTCAACCAAGTGAGGCAAAGGTCAGGGGCTGATATGAAGAGAAAACTCAAGTGGTATGATCTCATGGCTCTTGGTGTTGGAGGCATGCTTGGCGTTGGAGTCTTTGTCACAACAGGTTCTGTAGCCCACAAAACAGCTGGTCCTTCTGTCTTCATATCCTATATCATTGCAGGAATATCAGCCCTTCTTTCTTCCTTGTGTTACACTGAATTTTCTGTTCAAATTCCAGTTGCTGGTGGTGCTTTTAGTTATCTCAGAGTGACTTTTGGAGAATTTGTAGGTTATTTTGCTGGGGCAAATATACTCATGGAGTATGTATTGTCAAATGCTGCTGTGGCAAGGAGTTTTACAGAGTATTTATCCTCTGCATTTGGAGAAGATGATCCGAGGACATGGAGAGTAGAAGTGGATGGGTTAGTAAAGGGCTATAATATGTTGGACTTCCCAGCTGTTGCTCTTATTCTACTTCTCACTTTCTGCCTTTGCCATAGCACAAAGGAAAGCTCCACACTGAACCTTGTTATGACGGTGTTTCATGTGGTGTTCTTTGGATTTATTATAATTGCTGGTTTCTGCATTGGGAGCACCAACAACTTGGTGAAGCCTAAGGGACTAGCGCCTTTTGGTGTTAGAGGAGTTCTTGATGGGGCAGCTATAGTTTATTTCAGTTACATCGGCTACGATTCAGCTTCAACCATGGCCGAAGAGATCCAAAACCCTTCGCAGAGCCTGCCCGTCGGCATCATTGGTTCCGTTGTCATTACCTCCATGCTTTATTGCCTTATGGCCTTGTCCTTGTGTTTGATGGTTCCTTACAACAAGATATCAGAGAAAATATCATTTTCAGTGGCTTTCAGACAGATTGGTTGGGACTGGGCAAGTAACGTGGTTGGGGCTGGTGCAAGCTTGGGGATTGTTGCTTCACTCTTGGTTGCCATGTTAGGCCAAGCCAGGTACCTTTGTGTTATTGGCAGGGCGCGGCTAGTGCCATCCTGGTTAGCCAAGGTGCATCCTTCAACAGGCACTCCACTGAATGCCACACTCTTCCTTGGTAAATTAGTCAATAATTTTATGCTTTTTGATTGCTTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

424

Amino Acids

45.98

Weight (kDa)

8.77

Isoelectric Point (pI)

28.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	76 - 410	8.7e-47	Amino acid permease
Spore_permease	PF03845	81 - 181	3.2e-07	Spore germination protein
AA_permease	PF00324	82 - 409	1.1e-29	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10600 AT3G10600 AT5G04770 AT5G04770 AT5G04770
fragaria_vesca	FvH4_5g20380 FvH4_5g20380 FvH4_7g05050
malus_domestica	MD02G1259000.v1.1 MD04G1055400.v1.1 MD06G1047000.v1.1
prunus_persica	Prupe.2G071100_v2.0.a1 Prupe.2G071100_v2.0.a1 Prupe.5G055200_v2.0.a1
pyrus_communis	pycom02g22020 pycom04g04840
rosa_chinensis	RchiOBHm_Chr1g0331741 RchiOBHm_Chr7g0205641
rosa_laevigata	RLG00000003368 RLG00000029718
rosa_multiflora	Rmu_sc0006124.1_g000001 Rmu_ssc0000089.1_g000013
rosa_roxburghii	Rroxscaffold_3G00252110 Rroxscaffold_4G00318820
rosa_rugosa	Rorug01G0095900 Rorug01G0096000 Rorug07G0092300 Rorug07G0092300
rosa_samantha	Rh1BG091400 Rh1DG125300 Rh7AG223200 Rh7BG218200 Rh7CG236500 Rh7DG230200
rosa_wichuraiana	Rw1G009690 Rw7G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	740
Acc65I	GGTACC	1 cut(s)	1134
AccB1I	GGYRCC	1 cut(s)	1134
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccII	CGCG	1 cut(s)	1159
AciI	CCGC	1 cut(s)	1159
AclWI	GGATC	2 cut(s)	557, 883
AcoI	YGGCCR	1 cut(s)	879
AcsI	RAATTY	3 cut(s)	389, 402, 452
AfaI	GTAC	1 cut(s)	1136
AfiI	CCNNNNNNNGG	3 cut(s)	175, 413, 1199
AgsI	TTSAA	3 cut(s)	401, 873, 1197
AjnI	CCWGG	4 cut(s)	161, 174, 1130, 1172
AluBI	AGCT	7 cut(s)	181, 317, 629, 684, 833, 869, 1086
AluI	AGCT	7 cut(s)	181, 317, 629, 684, 833, 869, 1086
Alw21I	GWGCWC	2 cut(s)	183, 767
AlwI	GGATC	2 cut(s)	557, 883
AlwNI	CAGNNNCTG	4 cut(s)	209, 299, 413, 910
AoxI	GGCC	3 cut(s)	879, 966, 1123
ApeKI	GCWGC	2 cut(s)	509, 830
ApoI	RAATTY	3 cut(s)	389, 402, 452
Asp718I	GGTACC	1 cut(s)	1134
AspLEI	GCGC	2 cut(s)	799, 1159
AspS9I	GGNCC	2 cut(s)	165, 320
AsuHPI	GGTGA	1 cut(s)	790
AvaII	GGWCC	2 cut(s)	165, 320
AxyI	CCTNAGG	1 cut(s)	786
BaeI	ACNNNNGTAYC	2 cut(s)	1126, 1159
BanI	GGYRCC	1 cut(s)	1134
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	322
Bbv12I	GWGCWC	2 cut(s)	183, 767
BbvI	GCAGC	2 cut(s)	496, 842
BccI	CCATC	4 cut(s)	584, 818, 979, 1177
BciT130I	CCWGG	4 cut(s)	163, 176, 1132, 1174
BfaI	CTAG	2 cut(s)	794, 1163
BfmI	CTRYAG	2 cut(s)	300, 834
BfoI	RGCGCY	1 cut(s)	800
BisI	GCNGC	3 cut(s)	510, 831, 1160
BlsI	GCNGC	3 cut(s)	511, 832, 1161
Bme1390I	CCNGG	4 cut(s)	163, 176, 1132, 1174
Bme18I	GGWCC	2 cut(s)	165, 320
BmgT120I	GGNCC	2 cut(s)	165, 320
BmiI	GGNNCC	4 cut(s)	167, 931, 990, 1136
BmrFI	CCNGG	4 cut(s)	163, 176, 1132, 1174
BmrI	ACTGGG	1 cut(s)	1063
BmsI	GCATC	2 cut(s)	930, 1198
BmuI	ACTGGG	1 cut(s)	1063
BpiI	GAAGAC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	4 cut(s)	566, 876, 1182, 1228
BsaXI	ACNNNNNCTCC	8 cut(s)	49, 79, 270, 300, 441, 471, 1189, 1219
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 413, 1199
Bse1I	ACTGG	4 cut(s)	19, 87, 407, 1058
Bse21I	CCTNAGG	1 cut(s)	786
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	4 cut(s)	163, 176, 1132, 1174
BseDI	CCNNGG	4 cut(s)	566, 876, 1182, 1228
BseGI	GGATG	3 cut(s)	595, 1169, 1189
BseLI	CCNNNNNNNGG	3 cut(s)	175, 413, 1199
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	154, 448
BseNI	ACTGG	4 cut(s)	19, 87, 407, 1058
BseRI	GAGGAG	2 cut(s)	57, 828
BseXI	GCAGC	2 cut(s)	496, 842
BseYI	CCCAGC	2 cut(s)	470, 625
Bsh1236I	CGCG	1 cut(s)	1159
BshFI	GGCC	3 cut(s)	881, 968, 1125
BshNI	GGYRCC	1 cut(s)	1134
BsiHKAI	GWGCWC	2 cut(s)	183, 767
BslFI	GGGAC	3 cut(s)	106, 804, 1064
BslI	CCNNNNNNNGG	3 cut(s)	175, 413, 1199
BsmFI	GGGAC	3 cut(s)	106, 804, 1064
BsmI	GAATGC	2 cut(s)	156, 1219
BsnI	GGCC	3 cut(s)	881, 968, 1125
Bsp1286I	GDGCHC	2 cut(s)	183, 767
Bsp143I	GATC	3 cut(s)	238, 562, 888
Bsp19I	CCATGG	1 cut(s)	876
BspACI	CCGC	1 cut(s)	1159
BspANI	GGCC	3 cut(s)	881, 968, 1125
BspCNI	CTCAG	2 cut(s)	153, 447
BspFNI	CGCG	1 cut(s)	1159
BspLI	GGNNCC	4 cut(s)	167, 931, 990, 1136
BspPI	GGATC	2 cut(s)	557, 883
BspT107I	GGYRCC	1 cut(s)	1134
BsrDI	GCAATG	1 cut(s)	345
BsrI	ACTGG	4 cut(s)	19, 87, 407, 1058
BssECI	CCNNGG	4 cut(s)	566, 876, 1182, 1228
BssMI	GATC	3 cut(s)	238, 562, 888
BssT1I	CCWWGG	3 cut(s)	876, 1182, 1228
Bst2UI	CCWGG	4 cut(s)	163, 176, 1132, 1174
Bst4CI	ACNGT	1 cut(s)	709
Bst6I	CTCTTC	3 cut(s)	212, 879, 1229
BstAPI	GCANNNNNTGC	1 cut(s)	910
BstC8I	GCNNGC	4 cut(s)	156, 266, 911, 1084
BstDEI	CTNAG	3 cut(s)	140, 434, 786
BstDSI	CCRYGG	1 cut(s)	876
BstENI	CCTNNNNNAGG	1 cut(s)	1197
BstF5I	GGATG	3 cut(s)	595, 1169, 1189
BstFNI	CGCG	1 cut(s)	1159
BstH2I	RGCGCY	1 cut(s)	800
BstHHI	GCGC	2 cut(s)	799, 1159
BstKTI	GATC	3 cut(s)	241, 565, 891
BstMBI	GATC	3 cut(s)	238, 562, 888
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 270, 419, 515, 762, 910, 1165
BstNI	CCWGG	4 cut(s)	163, 176, 1132, 1174
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	4 cut(s)	161, 174, 1130, 1172
BstSFI	CTRYAG	2 cut(s)	300, 834
BstUI	CGCG	1 cut(s)	1159
BstV1I	GCAGC	2 cut(s)	496, 842
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	888
BstXI	CCANNNNNNTGG	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	888
Bsu36I	CCTNAGG	1 cut(s)	786
BsuRI	GGCC	3 cut(s)	881, 968, 1125
BtgI	CCRYGG	1 cut(s)	876
BtsCI	GGATG	3 cut(s)	595, 1169, 1189
BtsIMutI	CAGTG	4 cut(s)	384, 689, 1032, 1208
Cac8I	GCNNGC	4 cut(s)	156, 266, 911, 1084
CaiI	CAGNNNCTG	4 cut(s)	209, 299, 413, 910
CfoI	GCGC	2 cut(s)	799, 1159
Cfr13I	GGNCC	2 cut(s)	165, 320
Csp6I	GTAC	1 cut(s)	1135
CspCI	CAANNNNNGTGG	2 cut(s)	1047, 1082
CviAII	CATG	9 cut(s)	37, 244, 265, 487, 573, 716, 877, 949, 1117
CviQI	GTAC	1 cut(s)	1135
DdeI	CTNAG	3 cut(s)	140, 434, 786
DpnI	GATC	3 cut(s)	240, 564, 890
DpnII	GATC	3 cut(s)	238, 562, 888
EaeI	YGGCCR	1 cut(s)	879
Eam1104I	CTCTTC	3 cut(s)	212, 879, 1229
EarI	CTCTTC	3 cut(s)	212, 879, 1229
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	3 cut(s)	876, 1182, 1228
Eco24I	GRGCYC	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	1005
Eco47I	GGWCC	2 cut(s)	165, 320
Eco53kI	GAGCTC	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	1197
EcoRII	CCWGG	4 cut(s)	161, 174, 1130, 1172
EcoRV	GATATC	1 cut(s)	1005
EcoT14I	CCWWGG	3 cut(s)	876, 1182, 1228
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	3 cut(s)	876, 1182, 1228
FaeI	CATG	9 cut(s)	40, 247, 268, 490, 576, 719, 880, 952, 1120
FaqI	GGGAC	3 cut(s)	106, 804, 1064
FatI	CATG	9 cut(s)	36, 243, 264, 486, 572, 715, 876, 948, 1116
Fnu4HI	GCNGC	3 cut(s)	510, 831, 1160
FokI	GGATG	3 cut(s)	602, 1156, 1176
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	3 cut(s)	510, 831, 1160
FspBI	CTAG	2 cut(s)	794, 1163
GlaI	GCGC	2 cut(s)	798, 1158
GluI	GCNGC	3 cut(s)	510, 831, 1160
GsaI	CCCAGC	2 cut(s)	474, 629
HaeII	RGCGCY	1 cut(s)	800
HaeIII	GGCC	3 cut(s)	881, 968, 1125
HhaI	GCGC	2 cut(s)	799, 1159
Hin1II	CATG	9 cut(s)	40, 247, 268, 490, 576, 719, 880, 952, 1120
Hin6I	GCGC	2 cut(s)	797, 1157
HinP1I	GCGC	2 cut(s)	797, 1157
HindIII	AAGCTT	1 cut(s)	1084
HinfI	GANTC	2 cut(s)	279, 863
HphI	GGTGA	1 cut(s)	790
Hpy188I	TCNGA	5 cut(s)	143, 437, 567, 1009, 1037
Hpy188III	TCNNGA	1 cut(s)	821
Hpy99I	CGWCG	1 cut(s)	920
HpyAV	CCTTC	4 cut(s)	333, 374, 909, 1203
HpyCH4III	ACNGT	1 cut(s)	709
HpyCH4IV	ACGT	1 cut(s)	1065
HpyCH4V	TGCA	6 cut(s)	32, 350, 548, 756, 1082, 1189
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 270, 419, 515, 762, 910, 1165
HpyF3I	CTNAG	3 cut(s)	140, 434, 786
HpySE526I	ACGT	1 cut(s)	1065
Hsp92II	CATG	9 cut(s)	40, 247, 268, 490, 576, 719, 880, 952, 1120
HspAI	GCGC	2 cut(s)	797, 1157
KpnI	GGTACC	1 cut(s)	1138
Kzo9I	GATC	3 cut(s)	238, 562, 888
LmnI	GCTCC	3 cut(s)	178, 689, 762
Lsp1109I	GCAGC	2 cut(s)	496, 842
LweI	GCATC	2 cut(s)	930, 1198
MaeI	CTAG	2 cut(s)	794, 1163
MaeII	ACGT	1 cut(s)	1065
MaeIII	GTNAC	5 cut(s)	286, 380, 439, 848, 1061
MalI	GATC	3 cut(s)	240, 564, 890
MboI	GATC	3 cut(s)	238, 562, 888
MboII	GAAGA	6 cut(s)	229, 322, 363, 569, 896, 1216
MflI	RGATCY	1 cut(s)	888
MhlI	GDGCHC	2 cut(s)	183, 767
MluCI	AATT	6 cut(s)	389, 402, 452, 741, 1235, 1246
MlyI	GAGTC	1 cut(s)	288
MmeI	TCCRAC	4 cut(s)	126, 238, 256, 597
MnlI	CCTC	7 cut(s)	78, 186, 254, 553, 561, 806, 955
MspA1I	CMGCKG	2 cut(s)	317, 629
MspR9I	CCNGG	4 cut(s)	163, 176, 1132, 1174
Mva1269I	GAATGC	2 cut(s)	156, 1219
MvaI	CCWGG	4 cut(s)	163, 176, 1132, 1174
MvnI	CGCG	1 cut(s)	1159
MwoI	GCNNNNNNNGC	7 cut(s)	38, 270, 419, 515, 762, 910, 1165
NcoI	CCATGG	1 cut(s)	876
NdeII	GATC	3 cut(s)	238, 562, 888
NlaIII	CATG	9 cut(s)	40, 247, 268, 490, 576, 719, 880, 952, 1120
NlaIV	GGNNCC	4 cut(s)	167, 931, 990, 1136
NmuCI	GTSAC	2 cut(s)	286, 439
NspI	RCATGY	1 cut(s)	268
PaeI	GCATGC	1 cut(s)	268
PctI	GAATGC	2 cut(s)	156, 1219
PfeI	GAWTC	1 cut(s)	863
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	511, 832, 1161
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	740
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	4 cut(s)	161, 174, 1130, 1172
PspFI	CCCAGC	2 cut(s)	470, 625
PspGI	CCWGG	4 cut(s)	161, 174, 1130, 1172
PspN4I	GGNNCC	4 cut(s)	167, 931, 990, 1136
PspPI	GGNCC	2 cut(s)	165, 320
PstNI	CAGNNNCTG	4 cut(s)	209, 299, 413, 910
PsuI	RGATCY	1 cut(s)	888
PvuII	CAGCTG	2 cut(s)	317, 629
RsaI	GTAC	1 cut(s)	1136
RsaNI	GTAC	1 cut(s)	1135
SacI	GAGCTC	1 cut(s)	183
SatI	GCNGC	3 cut(s)	510, 831, 1160
Sau3AI	GATC	3 cut(s)	238, 562, 888
Sau96I	GGNCC	2 cut(s)	165, 320
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	4 cut(s)	163, 176, 1132, 1174
SduI	GDGCHC	2 cut(s)	183, 767
SfaNI	GCATC	2 cut(s)	930, 1198
SfcI	CTRYAG	2 cut(s)	300, 834
SinI	GGWCC	2 cut(s)	165, 320
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	268
Sse9I	AATT	6 cut(s)	389, 402, 452, 741, 1235, 1246
SsiI	CCGC	1 cut(s)	1159
SspMI	CTAG	2 cut(s)	794, 1163
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	4 cut(s)	161, 174, 1130, 1172
StyI	CCWWGG	3 cut(s)	876, 1182, 1228
TaaI	ACNGT	1 cut(s)	709
TaiI	ACGT	1 cut(s)	1068
TasI	AATT	6 cut(s)	389, 402, 452, 741, 1235, 1246
TauI	GCSGC	1 cut(s)	1162
TfiI	GAWTC	1 cut(s)	863
TscAI	CASTG	4 cut(s)	391, 696, 1032, 1215
TseFI	GTSAC	2 cut(s)	286, 439
TseI	GCWGC	2 cut(s)	509, 830
Tsp45I	GTSAC	2 cut(s)	286, 439
TspDTI	ATGAA	3 cut(s)	230, 322, 704
TspGWI	ACGGA	1 cut(s)	922
TspRI	CASTG	4 cut(s)	391, 696, 1032, 1215
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	165, 320
XagI	CCTNNNNNAGG	1 cut(s)	1197
XapI	RAATTY	3 cut(s)	389, 402, 452
XceI	RCATGY	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XspI	CTAG	2 cut(s)	794, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.