Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003422

Physical Location & Seq

Genomic Coordinates Forward (+)

46218846 .. 46222903

Gene Structure 4058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGGAGAGCCATGGGTCGTCTTTCTCAAGCCTCCGGACCTACCTCCGAGCTCTGTCTGAGACTCCGGCCCGTCTGGTTCGCCGTGCCGTTTCAGTCTCCACCTCCTACGAGGAAATGAGTGCTGTCCGCGCCCGTTCGGGCTCCGACATGGAGAAGAGCCTTGGCTGGCTCGACCTGATCGGATTCGGCGTAGGCGGCATGGTGGGTGCTGGAGTGTTCGTCACCACCGGCCGTGCAAGTCGGCTGTATGCGGGTCCATCTGTGGTGCTATCGTATGCCATTGCCGGACTCTGCGCCCTTCTCTCCGCCTTCTGCTACACTGAGTTTGCCGTCGACATGCCCGTCGCAGGCGGTGCCTTTAGCTATCTCCGGGTCACATTTGGTGAATTTGCGGCGTTTTTGACTGGAGCCAACTTGGTGATGGACTATGTGATGTCGAACGCCGCCGTTGCAAGGGGTTTCACGGCTTACTTGGGCACCGCAATTGGGGTCCCCGCTGCAAAATGGAGGTTCACAGTGGCCGGACTCCCCAATGGTTTCAATGAAATCGACGTCGTTGCTGTTGTGGTGGTTTTAGCAATTACGCTCATTATCTGCTACAGTACAAGGGAGAGCTCGGTGGTCAATATGGTGTTGACGGCGCTGCATATAATATTCATATTATTCGTCATAGTGGTTGGGTTGTGCAAAGGCGACTGGAACAACTTCACTGAACCGGGCGACCCGACGCATCCATCCGGGTTTTTTCCGTACGGGGTTTCTGGCGTCTTTAATGGGGCGAGCATGGTTTATCTCAGCTATATCGGATACGACGCCGTTTCGACCATGGCGGAAGAGGTCCGCAACCCCGTCAAGGACATTCCCATCGGAGTCTCCGGGTCCGTCCTCATCGTCACTGTTCTTTACTGTTTGATGGCCGCGTCCATGTCCAAACTGCTTCCATACGATTCGATCGATCCGGAGGCACCGTTCTCGGCGGCGTTCGGAGGGAAATGGGAGTCGAGAGTGATCGGAGTGGGTGCCGCGCTGGGAATTCTGACGTCGCTATTGGTGGCGATGCTGGGGCAGGCGAGGTACATGTGTGTCATCGGACGATCGAGTGTGGTCCCCGCATGGTTCGCGAGGGTCCACCCCAAGACATCCACGCCTGTTAACTCCTCCGCTTTTCTCGCTATCATGTTCTCGGTCATTTGGCAAATTGCCCCACAGGGAAGAGCCAAAGCCTTGATGCTTTGTGTTACTGCAGTAATTGCAGCTTCAATCGTACAAACTTTCCATTGCATGGTTAAACAAGCACGAAAACCCGAGTATTGGGGTGTGCCTTTGATGCCATGGATGCCATCTGTCTCCATTTTCTTAAACATATTTCTGTTGGGGTCATTGGACAGACCATCCTATGTGAGATTTGGATACTTTTCAGGTTTTGCGGTGCTTGTATATGTTTTCTACAGTGTTCATGCTAGCTTTGATGCGCAAGGAAATGGGTCTTTCACTCAGAAGAATGGTGAAATTCACATAGAGTCTGCAGAGGAAAGTAATGATCCAGGTCTTAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

519

Amino Acids

55.6

Weight (kDa)

7.57

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	54 - 458	7.2e-51	Amino acid permease
AA_permease	PF00324	62 - 421	3.6e-29	Amino acid permease
AA_permease_C	PF13906	438 - 488	3.8e-13	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10600 AT3G10600 AT5G04770 AT5G04770 AT5G04770
fragaria_vesca	FvH4_5g20380 FvH4_5g20380 FvH4_7g05050
malus_domestica	MD02G1259000.v1.1 MD04G1055400.v1.1 MD06G1047000.v1.1
prunus_persica	Prupe.2G071100_v2.0.a1 Prupe.2G071100_v2.0.a1 Prupe.5G055200_v2.0.a1
pyrus_communis	pycom02g22020 pycom04g04840
rosa_chinensis	RchiOBHm_Chr1g0331741 RchiOBHm_Chr7g0205641
rosa_laevigata	RLG00000003368 RLG00000029718
rosa_multiflora	Rmu_sc0006124.1_g000001 Rmu_ssc0000089.1_g000013
rosa_roxburghii	Rroxscaffold_3G00252110 Rroxscaffold_4G00318820
rosa_rugosa	Rorug01G0095900 Rorug01G0096000 Rorug07G0092300 Rorug07G0092300
rosa_samantha	Rh1BG091400 Rh1DG125300 Rh7AG223200 Rh7BG218200 Rh7CG236500 Rh7DG230200
rosa_wichuraiana	Rw1G009690 Rw7G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AatII	GACGTC	2 cut(s)	555, 1043
Acc16I	TGCGCA	1 cut(s)	1473
AccB1I	GGYRCC	4 cut(s)	353, 476, 964, 1019
AccB7I	CCANNNNNTGG	1 cut(s)	1282
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	4 cut(s)	129, 920, 1025, 1121
AccIII	TCCGGA	2 cut(s)	33, 958
AclWI	GGATC	2 cut(s)	950, 1535
AcoI	YGGCCR	3 cut(s)	229, 519, 915
AcsI	RAATTY	3 cut(s)	386, 1032, 1509
AcyI	GRCGYC	4 cut(s)	552, 765, 813, 1040
AfaI	GTAC	4 cut(s)	604, 752, 1076, 1266
AfiI	CCNNNNNNNGG	6 cut(s)	347, 453, 486, 853, 1282, 1311
AflIII	ACRYGT	1 cut(s)	1077
AgsI	TTSAA	2 cut(s)	541, 1260
AjnI	CCWGG	1 cut(s)	1543
AloI	GAACNNNNNNTCC	2 cut(s)	953, 985
AluBI	AGCT	6 cut(s)	50, 363, 615, 798, 1256, 1464
AluI	AGCT	6 cut(s)	50, 363, 615, 798, 1256, 1464
Alw21I	GWGCWC	2 cut(s)	52, 617
Alw26I	GTCTC	4 cut(s)	53, 100, 877, 1351
AlwI	GGATC	2 cut(s)	950, 1535
Ama87I	CYCGRG	1 cut(s)	1304
Aor13HI	TCCGGA	2 cut(s)	33, 958
AoxI	GGCC	4 cut(s)	66, 229, 519, 915
ApeKI	GCWGC	3 cut(s)	497, 643, 1253
ApoI	RAATTY	3 cut(s)	386, 1032, 1509
Asp700I	GAANNNNTTC	1 cut(s)	704
AspLEI	GCGC	5 cut(s)	131, 296, 643, 1027, 1474
AspS9I	GGNCC	8 cut(s)	36, 67, 254, 490, 838, 879, 1105, 1126
AsuC2I	CCSGG	4 cut(s)	371, 717, 739, 877
AsuHPI	GGTGA	4 cut(s)	214, 395, 430, 1517
AsuNHI	GCTAGC	1 cut(s)	1460
AvaI	CYCGRG	1 cut(s)	1304
AvaII	GGWCC	7 cut(s)	36, 254, 490, 838, 879, 1105, 1126
BaeGI	GKGCMC	1 cut(s)	479
BaeI	ACNNNNGTAYC	2 cut(s)	1066, 1099
BanI	GGYRCC	4 cut(s)	353, 476, 964, 1019
BanII	GRGCYC	3 cut(s)	52, 143, 617
Bbv12I	GWGCWC	2 cut(s)	52, 617
BbvI	GCAGC	3 cut(s)	484, 630, 1265
BccI	CCATC	7 cut(s)	265, 415, 742, 872, 907, 1348, 1399
BceAI	ACGGC	8 cut(s)	66, 71, 216, 314, 431, 480, 654, 800
BcgI	CGANNNNNNTGC	4 cut(s)	539, 573, 954, 988
BciT130I	CCWGG	1 cut(s)	1545
BciVI	GTATCC	2 cut(s)	800, 1403
BcnI	CCSGG	4 cut(s)	371, 717, 739, 877
BcoDI	GTCTC	4 cut(s)	53, 100, 877, 1351
BfaI	CTAG	1 cut(s)	1461
BfmI	CTRYAG	4 cut(s)	598, 1242, 1447, 1524
BfoI	RGCGCY	1 cut(s)	644
BfuI	GTATCC	2 cut(s)	800, 1403
BisI	GCNGC	9 cut(s)	196, 393, 444, 498, 644, 918, 978, 1023, 1254
BlsI	GCNGC	9 cut(s)	197, 394, 445, 499, 645, 919, 979, 1024, 1255
Bme1390I	CCNGG	5 cut(s)	371, 717, 739, 877, 1545
Bme18I	GGWCC	7 cut(s)	36, 254, 490, 838, 879, 1105, 1126
BmeT110I	CYCGRG	1 cut(s)	1304
BmgT120I	GGNCC	8 cut(s)	36, 67, 254, 490, 838, 879, 1105, 1126
BmrFI	CCNGG	5 cut(s)	371, 717, 739, 877, 1545
BmsI	GCATC	6 cut(s)	739, 1047, 1218, 1317, 1326, 1459
BmtI	GCTAGC	1 cut(s)	1464
BpmI	CTGGAG	2 cut(s)	231, 426
BpuEI	CTTGAG	1 cut(s)	10
BpuMI	CCSGG	4 cut(s)	371, 717, 739, 877
Bsa29I	ATCGAT	1 cut(s)	954
BsaHI	GRCGYC	4 cut(s)	552, 765, 813, 1040
BsaJI	CCNNGG	4 cut(s)	10, 160, 825, 1331
BsaWI	WCCGGW	2 cut(s)	33, 958
BsaXI	ACNNNNNCTCC	4 cut(s)	204, 234, 953, 983
Bsc4I	CCNNNNNNNGG	6 cut(s)	347, 453, 486, 853, 1282, 1311
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	409, 701
Bse3DI	GCAATG	2 cut(s)	279, 1276
BseAI	TCCGGA	2 cut(s)	33, 958
BseBI	CCWGG	1 cut(s)	1545
BseCI	ATCGAT	1 cut(s)	954
BseDI	CCNNGG	4 cut(s)	10, 160, 825, 1331
BseGI	GGATG	5 cut(s)	730, 734, 1139, 1341, 1391
BseLI	CCNNNNNNNGG	6 cut(s)	347, 453, 486, 853, 1282, 1311
BseMI	GCAATG	2 cut(s)	279, 1276
BseMII	CTCAG	4 cut(s)	48, 312, 808, 1508
BseNI	ACTGG	2 cut(s)	409, 701
BseRI	GAGGAG	1 cut(s)	1147
BseSI	GKGCMC	1 cut(s)	479
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	3 cut(s)	484, 630, 1265
BseYI	CCCAGC	2 cut(s)	1027, 1060
Bsh1236I	CGCG	4 cut(s)	129, 920, 1025, 1121
Bsh1285I	CGRYCG	3 cut(s)	232, 954, 1097
BshFI	GGCC	4 cut(s)	68, 231, 521, 917
BshNI	GGYRCC	4 cut(s)	353, 476, 964, 1019
BshVI	ATCGAT	1 cut(s)	954
BsiEI	CGRYCG	3 cut(s)	232, 954, 1097
BsiHKAI	GWGCWC	2 cut(s)	52, 617
BsiHKCI	CYCGRG	1 cut(s)	1304
BsiWI	CGTACG	1 cut(s)	750
BslFI	GGGAC	2 cut(s)	476, 1091
BslI	CCNNNNNNNGG	6 cut(s)	347, 453, 486, 853, 1282, 1311
BsmAI	GTCTC	4 cut(s)	53, 100, 877, 1351
BsmFI	GGGAC	2 cut(s)	476, 1091
BsnI	GGCC	4 cut(s)	68, 231, 521, 917
BsoBI	CYCGRG	1 cut(s)	1304
Bsp1286I	GDGCHC	4 cut(s)	52, 143, 479, 617
Bsp13I	TCCGGA	2 cut(s)	33, 958
Bsp143I	GATC	6 cut(s)	177, 951, 955, 1008, 1094, 1540
Bsp19I	CCATGG	3 cut(s)	10, 825, 1331
Bsp68I	TCGCGA	1 cut(s)	1121
BspANI	GGCC	4 cut(s)	68, 231, 521, 917
BspCNI	CTCAG	4 cut(s)	49, 313, 807, 1507
BspDI	ATCGAT	1 cut(s)	954
BspEI	TCCGGA	2 cut(s)	33, 958
BspFNI	CGCG	4 cut(s)	129, 920, 1025, 1121
BspMAI	CTGCAG	2 cut(s)	1246, 1528
BspOI	GCTAGC	1 cut(s)	1464
BspPI	GGATC	2 cut(s)	950, 1535
BspQI	GCTCTTC	2 cut(s)	149, 1207
BspT107I	GGYRCC	4 cut(s)	353, 476, 964, 1019
BsrDI	GCAATG	2 cut(s)	279, 1276
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	409, 701
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	4 cut(s)	10, 160, 825, 1331
BssMI	GATC	6 cut(s)	177, 951, 955, 1008, 1094, 1540
BssNI	GRCGYC	4 cut(s)	552, 765, 813, 1040
BssT1I	CCWWGG	4 cut(s)	10, 160, 825, 1331
Bst2UI	CCWGG	1 cut(s)	1545
Bst4CI	ACNGT	6 cut(s)	517, 602, 898, 908, 969, 1451
Bst6I	CTCTTC	3 cut(s)	149, 828, 1207
BstACI	GRCGYC	4 cut(s)	552, 765, 813, 1040
BstAPI	GCANNNNNTGC	2 cut(s)	353, 1250
BstC8I	GCNNGC	5 cut(s)	167, 349, 781, 1068, 1462
BstDEI	CTNAG	4 cut(s)	57, 321, 794, 1494
BstDSI	CCRYGG	3 cut(s)	10, 825, 1331
BstF5I	GGATG	5 cut(s)	730, 734, 1139, 1341, 1391
BstFNI	CGCG	4 cut(s)	129, 920, 1025, 1121
BstH2I	RGCGCY	1 cut(s)	644
BstHHI	GCGC	5 cut(s)	131, 296, 643, 1027, 1474
BstKTI	GATC	6 cut(s)	180, 954, 958, 1011, 1097, 1543
BstMAI	GTCTC	4 cut(s)	53, 100, 877, 1351
BstMBI	GATC	6 cut(s)	177, 951, 955, 1008, 1094, 1540
BstMCI	CGRYCG	3 cut(s)	232, 954, 1097
BstMWI	GCNNNNNNNGC	9 cut(s)	128, 195, 353, 449, 1118, 1169, 1250, 1327, 1336
BstNI	CCWGG	1 cut(s)	1545
BstNSI	RCATGY	2 cut(s)	340, 1081
BstSCI	CCNGG	5 cut(s)	369, 715, 737, 875, 1543
BstSFI	CTRYAG	4 cut(s)	598, 1242, 1447, 1524
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	4 cut(s)	129, 920, 1025, 1121
BstV1I	GCAGC	3 cut(s)	484, 630, 1265
BstZI	CGGCCG	1 cut(s)	229
Bsu15I	ATCGAT	1 cut(s)	954
BsuI	GTATCC	2 cut(s)	800, 1403
BsuRI	GGCC	4 cut(s)	68, 231, 521, 917
BsuTUI	ATCGAT	1 cut(s)	954
BtgI	CCRYGG	3 cut(s)	10, 825, 1331
BtgZI	GCGATG	1 cut(s)	1070
BtsCI	GGATG	5 cut(s)	730, 734, 1139, 1341, 1391
BtsIMutI	CAGTG	5 cut(s)	318, 522, 708, 894, 1456
BtuMI	TCGCGA	1 cut(s)	1121
Cac8I	GCNNGC	5 cut(s)	167, 349, 781, 1068, 1462
CfoI	GCGC	5 cut(s)	131, 296, 643, 1027, 1474
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	8 cut(s)	36, 67, 254, 490, 838, 879, 1105, 1126
ClaI	ATCGAT	1 cut(s)	954
CseI	GACGC	4 cut(s)	736, 754, 821, 909
Csp6I	GTAC	4 cut(s)	603, 751, 1075, 1265
CviQI	GTAC	4 cut(s)	603, 751, 1075, 1265
DdeI	CTNAG	4 cut(s)	57, 321, 794, 1494
DpnI	GATC	6 cut(s)	179, 953, 957, 1010, 1096, 1542
DpnII	GATC	6 cut(s)	177, 951, 955, 1008, 1094, 1540
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	3 cut(s)	229, 519, 915
EagI	CGGCCG	1 cut(s)	229
Eam1104I	CTCTTC	3 cut(s)	149, 828, 1207
EarI	CTCTTC	3 cut(s)	149, 828, 1207
EciI	GGCGGA	2 cut(s)	295, 845
Ecl136II	GAGCTC	2 cut(s)	50, 615
EclXI	CGGCCG	1 cut(s)	229
Eco130I	CCWWGG	4 cut(s)	10, 160, 825, 1331
Eco24I	GRGCYC	3 cut(s)	52, 143, 617
Eco47I	GGWCC	7 cut(s)	36, 254, 490, 838, 879, 1105, 1126
Eco52I	CGGCCG	1 cut(s)	229
Eco53kI	GAGCTC	2 cut(s)	50, 615
Eco88I	CYCGRG	1 cut(s)	1304
EcoICRI	GAGCTC	2 cut(s)	50, 615
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	1032
EcoRII	CCWGG	1 cut(s)	1543
EcoT14I	CCWWGG	4 cut(s)	10, 160, 825, 1331
EcoT38I	GRGCYC	3 cut(s)	52, 143, 617
ErhI	CCWWGG	4 cut(s)	10, 160, 825, 1331
FaqI	GGGAC	2 cut(s)	476, 1091
FauI	CCCGC	3 cut(s)	244, 502, 1117
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	9 cut(s)	196, 393, 444, 498, 644, 918, 978, 1023, 1254
FokI	GGATG	5 cut(s)	717, 721, 1126, 1348, 1378
FriOI	GRGCYC	3 cut(s)	52, 143, 617
Fsp4HI	GCNGC	9 cut(s)	196, 393, 444, 498, 644, 918, 978, 1023, 1254
FspBI	CTAG	1 cut(s)	1461
FspI	TGCGCA	1 cut(s)	1473
GlaI	GCGC	5 cut(s)	130, 295, 642, 1026, 1473
GluI	GCNGC	9 cut(s)	196, 393, 444, 498, 644, 918, 978, 1023, 1254
GsaI	CCCAGC	2 cut(s)	1031, 1064
GsuI	CTGGAG	2 cut(s)	231, 426
HaeII	RGCGCY	1 cut(s)	644
HaeIII	GGCC	4 cut(s)	68, 231, 521, 917
HgaI	GACGC	4 cut(s)	736, 754, 821, 909
HhaI	GCGC	5 cut(s)	131, 296, 643, 1027, 1474
Hin1I	GRCGYC	4 cut(s)	552, 765, 813, 1040
Hin6I	GCGC	5 cut(s)	129, 294, 641, 1025, 1472
HinP1I	GCGC	5 cut(s)	129, 294, 641, 1025, 1472
HincII	GTYRAC	3 cut(s)	334, 636, 1153
HindII	GTYRAC	3 cut(s)	334, 636, 1153
HinfI	GANTC	8 cut(s)	61, 183, 288, 525, 870, 947, 998, 1520
HpaI	GTTAAC	1 cut(s)	1153
HphI	GGTGA	4 cut(s)	214, 395, 430, 1517
Hpy166II	GTNNAC	5 cut(s)	334, 513, 636, 1129, 1153
Hpy188III	TCNNGA	4 cut(s)	34, 959, 1002, 1120
Hpy8I	GTNNAC	5 cut(s)	334, 513, 636, 1129, 1153
Hpy99I	CGWCG	7 cut(s)	335, 347, 554, 557, 730, 815, 1045
HpyAV	CCTTC	2 cut(s)	308, 319
HpyCH4III	ACNGT	6 cut(s)	517, 602, 898, 908, 969, 1451
HpyCH4IV	ACGT	2 cut(s)	552, 1040
HpyCH4V	TGCA	9 cut(s)	236, 452, 500, 646, 687, 1244, 1253, 1281, 1526
HpyF10VI	GCNNNNNNNGC	9 cut(s)	128, 195, 353, 449, 1118, 1169, 1250, 1327, 1336
HpyF3I	CTNAG	4 cut(s)	57, 321, 794, 1494
HpySE526I	ACGT	2 cut(s)	552, 1040
Hsp92I	GRCGYC	4 cut(s)	552, 765, 813, 1040
HspAI	GCGC	5 cut(s)	129, 294, 641, 1025, 1472
KflI	GGGWCCC	1 cut(s)	490
Kpn2I	TCCGGA	2 cut(s)	33, 958
KspAI	GTTAAC	1 cut(s)	1153
Kzo9I	GATC	6 cut(s)	177, 951, 955, 1008, 1094, 1540
LguI	GCTCTTC	2 cut(s)	149, 1207
LmnI	GCTCC	2 cut(s)	146, 407
Lsp1109I	GCAGC	3 cut(s)	484, 630, 1265
LweI	GCATC	6 cut(s)	739, 1047, 1218, 1317, 1326, 1459
MaeI	CTAG	1 cut(s)	1461
MaeII	ACGT	2 cut(s)	552, 1040
MaeIII	GTNAC	4 cut(s)	220, 373, 892, 1237
MalI	GATC	6 cut(s)	179, 953, 957, 1010, 1096, 1542
MboI	GATC	6 cut(s)	177, 951, 955, 1008, 1094, 1540
MboII	GAAGA	4 cut(s)	166, 845, 1224, 1510
MfeI	CAATTG	1 cut(s)	483
MhlI	GDGCHC	4 cut(s)	52, 143, 479, 617
MluCI	AATT	7 cut(s)	386, 483, 579, 1032, 1197, 1248, 1509
MlyI	GAGTC	6 cut(s)	55, 282, 519, 879, 1007, 1529
MmeI	TCCRAC	1 cut(s)	168
MroI	TCCGGA	2 cut(s)	33, 958
MroXI	GAANNNNTTC	1 cut(s)	704
MseI	TTAA	5 cut(s)	771, 1152, 1287, 1358, 1551
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	5 cut(s)	371, 717, 739, 877, 1545
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	1545
MvnI	CGCG	4 cut(s)	129, 920, 1025, 1121
MwoI	GCNNNNNNNGC	9 cut(s)	128, 195, 353, 449, 1118, 1169, 1250, 1327, 1336
NciI	CCSGG	4 cut(s)	371, 717, 739, 877
NcoI	CCATGG	3 cut(s)	10, 825, 1331
NdeII	GATC	6 cut(s)	177, 951, 955, 1008, 1094, 1540
NheI	GCTAGC	1 cut(s)	1460
NmeAIII	GCCGAG	1 cut(s)	953
NmuCI	GTSAC	3 cut(s)	220, 373, 892
NruI	TCGCGA	1 cut(s)	1121
NsbI	TGCGCA	1 cut(s)	1473
NspI	RCATGY	2 cut(s)	340, 1081
PciI	ACATGT	1 cut(s)	1077
PciSI	GCTCTTC	2 cut(s)	149, 1207
PcsI	WCGNNNNNNNCGW	3 cut(s)	186, 339, 951
PdmI	GAANNNNTTC	1 cut(s)	704
PfeI	GAWTC	2 cut(s)	183, 947
Pfl23II	CGTACG	1 cut(s)	750
PflMI	CCANNNNNTGG	1 cut(s)	1282
PkrI	GCNGC	9 cut(s)	197, 394, 445, 499, 645, 919, 979, 1024, 1255
Ple19I	CGATCG	2 cut(s)	954, 1097
PleI	GAGTC	6 cut(s)	55, 282, 519, 878, 1006, 1528
PpsI	GAGTC	6 cut(s)	55, 282, 519, 878, 1006, 1528
PpuMI	RGGWCCY	1 cut(s)	490
PscI	ACATGT	1 cut(s)	1077
Psp124BI	GAGCTC	2 cut(s)	52, 617
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	1543
PspFI	CCCAGC	2 cut(s)	1027, 1060
PspGI	CCWGG	1 cut(s)	1543
PspLI	CGTACG	1 cut(s)	750
PspPI	GGNCC	8 cut(s)	36, 67, 254, 490, 838, 879, 1105, 1126
PspPPI	RGGWCCY	1 cut(s)	490
PstI	CTGCAG	2 cut(s)	1246, 1528
PvuI	CGATCG	2 cut(s)	954, 1097
RruI	TCGCGA	1 cut(s)	1121
RsaI	GTAC	4 cut(s)	604, 752, 1076, 1266
RsaNI	GTAC	4 cut(s)	603, 751, 1075, 1265
SacI	GAGCTC	2 cut(s)	52, 617
SalI	GTCGAC	1 cut(s)	332
SapI	GCTCTTC	2 cut(s)	149, 1207
SaqAI	TTAA	5 cut(s)	771, 1152, 1287, 1358, 1551
SatI	GCNGC	9 cut(s)	196, 393, 444, 498, 644, 918, 978, 1023, 1254
Sau3AI	GATC	6 cut(s)	177, 951, 955, 1008, 1094, 1540
Sau96I	GGNCC	8 cut(s)	36, 67, 254, 490, 838, 879, 1105, 1126
SchI	GAGTC	6 cut(s)	55, 282, 519, 879, 1007, 1529
ScrFI	CCNGG	5 cut(s)	371, 717, 739, 877, 1545
SduI	GDGCHC	4 cut(s)	52, 143, 479, 617
SfaNI	GCATC	6 cut(s)	739, 1047, 1218, 1317, 1326, 1459
SfcI	CTRYAG	4 cut(s)	598, 1242, 1447, 1524
SinI	GGWCC	7 cut(s)	36, 254, 490, 838, 879, 1105, 1126
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	7 cut(s)	386, 483, 579, 1032, 1197, 1248, 1509
SspI	AATATT	1 cut(s)	654
SspMI	CTAG	1 cut(s)	1461
SstI	GAGCTC	2 cut(s)	52, 617
StyD4I	CCNGG	5 cut(s)	369, 715, 737, 875, 1543
StyI	CCWWGG	4 cut(s)	10, 160, 825, 1331
TaaI	ACNGT	6 cut(s)	517, 602, 898, 908, 969, 1451
TaiI	ACGT	2 cut(s)	555, 1043
TaqI	TCGA	9 cut(s)	171, 333, 437, 549, 821, 950, 954, 1001, 1097
TaqII	GACCGA	1 cut(s)	1174
TasI	AATT	7 cut(s)	386, 483, 579, 1032, 1197, 1248, 1509
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	6 cut(s)	198, 395, 446, 920, 980, 1025
TfiI	GAWTC	2 cut(s)	183, 947
Tru1I	TTAA	5 cut(s)	771, 1152, 1287, 1358, 1551
Tru9I	TTAA	5 cut(s)	771, 1152, 1287, 1358, 1551
TscAI	CASTG	5 cut(s)	325, 522, 715, 901, 1456
TseFI	GTSAC	3 cut(s)	220, 373, 892
TseI	GCWGC	3 cut(s)	497, 643, 1253
Tsp45I	GTSAC	3 cut(s)	220, 373, 892
TspDTI	ATGAA	3 cut(s)	558, 646, 1445
TspGWI	ACGGA	2 cut(s)	738, 871
TspRI	CASTG	5 cut(s)	325, 522, 715, 901, 1456
Van91I	CCANNNNNTGG	1 cut(s)	1282
VpaK11BI	GGWCC	7 cut(s)	36, 254, 490, 838, 879, 1105, 1126
XapI	RAATTY	3 cut(s)	386, 1032, 1509
XceI	RCATGY	2 cut(s)	340, 1081
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	704
XspI	CTAG	1 cut(s)	1461
ZraI	GACGTC	2 cut(s)	553, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.