pycom04g05380
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0003639
Physical Location & Seq
Reverse (-)
5167225 .. 5168515
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 813 bp
ATGAGAAAAATATCCAAACAGGAGGGCAGACAATCTATTGATGGAGTACTCATTGACCCTCCAATTTTCTTCTCAGAAAACCGTACCAACCAGCAGGATATAAACCCCCAGAAGTTGTTGATAGCCAACAATCAGTCTCTCCTGCTAATATCTGATACATCTAACACCAAATTTCCCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCCCCCTACGTACGTACATCATGGCTCGAAAGAACGATGGGTCAGCAAAAAGGGTTATGAACAAAGGAGCATGGACAGCGGAGGAAGATAGAAAACTTGCAGAATATATTGAAATTCATGGTGCAAAGAGGTGGAAGACAATTGCTTCAATAGCAGGTTTGAATCGTTGCGGGAAGAGTTGCAGGTTGAGATGGTTGAACTATTTGAGACCCAATATTAAGAGAGGCAACATTTCTGATGATGAAGAGGACTTGATAATTAGACTTCATAAACTACTGGGAAACAGGTGGTCCTTGATTGCCGGGAGACTTCCAGGCCGAACAGACAATGAAATAAAGAATTACTGGAATTCTCATTTGAGCAAAAAAATGAGTCAGAAGGAGAAAAAACTGCAGACTTCAACAGCCCAAGACACGACGACGAAGACTGCTACTGCTACTAAACCTTCCCATAAAGCATCAAACGATTGCGCCGATACGAACTTTGATGTGAATGAGTTCTTTGACTTCTCTGCCGAAGGTTCTTATGGGTTGGAGTGGGTGAACAAGTTTCTTGAGCTTGATGAAAACACCACGGGTTACCAAGAAAAGGTCAGCAGCATTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

271

Amino Acids

30.69

Weight (kDa)

9.38

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 90 - 137 1.5e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 93 - 151 3.3e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 143 - 188 1.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 147 - 195 1.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 350, 378
AciI CCGC 2 cut(s) 284, 375
AcsI RAATTY 3 cut(s) 170, 318, 553
AfaI GTAC 4 cut(s) 48, 85, 217, 221
AfiI CCNNNNNNNGG 1 cut(s) 793
AgsI TTSAA 5 cut(s) 317, 354, 367, 403, 606
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 1 cut(s) 763
AluI AGCT 1 cut(s) 763
Alw26I GTCTC 3 cut(s) 141, 406, 505
AoxI GGCC 1 cut(s) 520
ApeKI GCWGC 1 cut(s) 801
ApoI RAATTY 3 cut(s) 170, 318, 553
Asp700I GAANNNNTTC 1 cut(s) 701
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 1 cut(s) 495
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 1 cut(s) 757
AvaII GGWCC 1 cut(s) 495
BbsI GAAGAC 2 cut(s) 347, 635
BccI CCATC 3 cut(s) 35, 236, 390
BciT130I CCWGG 1 cut(s) 519
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 3 cut(s) 141, 406, 505
BfmI CTRYAG 1 cut(s) 596
BfuAI ACCTGC 2 cut(s) 350, 378
BisI GCNGC 1 cut(s) 802
BlsI GCNGC 1 cut(s) 803
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 2 cut(s) 508, 519
Bme18I GGWCC 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 495
BmrFI CCNGG 2 cut(s) 508, 519
BmrI ACTGGG 1 cut(s) 491
BmsI GCATC 1 cut(s) 671
BmuI ACTGGG 1 cut(s) 491
BpiI GAAGAC 2 cut(s) 347, 635
BpuEI CTTGAG 1 cut(s) 779
BpuMI CCSGG 1 cut(s) 508
BsaAI YACGTR 2 cut(s) 215, 219
BsaI GGTCTC 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 777
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse1I ACTGG 2 cut(s) 486, 554
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 777
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 486, 554
BshFI GGCC 1 cut(s) 522
BsiSI CCGG 1 cut(s) 507
BsiWI CGTACG 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 793
BsmAI GTCTC 3 cut(s) 141, 406, 505
BsnI GGCC 1 cut(s) 522
Bso31I GGTCTC 1 cut(s) 406
BspACI CCGC 2 cut(s) 284, 375
BspANI GGCC 1 cut(s) 522
BspCNI CTCAG 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 600
BspMI ACCTGC 2 cut(s) 350, 378
BspTNI GGTCTC 1 cut(s) 406
BsrI ACTGG 2 cut(s) 486, 554
BssECI CCNNGG 1 cut(s) 777
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 2 cut(s) 374, 444
BstBAI YACGTR 2 cut(s) 215, 219
BstDEI CTNAG 1 cut(s) 73
BstDSI CCRYGG 1 cut(s) 777
BstEII GGTNACC 1 cut(s) 782
BstHHI GCGC 1 cut(s) 677
BstMAI GTCTC 3 cut(s) 141, 406, 505
BstMWI GCNNNNNNNGC 2 cut(s) 281, 356
BstNI CCWGG 1 cut(s) 519
BstPI GGTNACC 1 cut(s) 782
BstSCI CCNGG 2 cut(s) 506, 517
BstSFI CTRYAG 1 cut(s) 596
BstSNI TACGTA 2 cut(s) 215, 219
BstV2I GAAGAC 2 cut(s) 347, 635
BsuRI GGCC 1 cut(s) 522
BtgI CCRYGG 1 cut(s) 777
BveI ACCTGC 2 cut(s) 350, 378
CfoI GCGC 1 cut(s) 677
Cfr13I GGNCC 1 cut(s) 495
Csp6I GTAC 4 cut(s) 47, 84, 216, 220
CviAII CATG 3 cut(s) 226, 276, 323
CviJI RGCY 5 cut(s) 125, 230, 522, 611, 763
CviKI_1 RGCY 5 cut(s) 125, 230, 522, 611, 763
CviQI GTAC 4 cut(s) 47, 84, 216, 220
DdeI CTNAG 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 374, 444
EarI CTCTTC 2 cut(s) 374, 444
Eco105I TACGTA 2 cut(s) 215, 219
Eco31I GGTCTC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 495
Eco91I GGTNACC 1 cut(s) 782
EcoO65I GGTNACC 1 cut(s) 782
EcoRI GAATTC 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 517
FaeI CATG 3 cut(s) 229, 279, 326
FaiI YATR 9 cut(s) 101, 227, 263, 277, 312, 324, 474, 657, 732
FatI CATG 3 cut(s) 225, 275, 322
FauI CCCGC 1 cut(s) 368
Fnu4HI GCNGC 1 cut(s) 802
Fsp4HI GCNGC 1 cut(s) 802
GlaI GCGC 1 cut(s) 676
GluI GCNGC 1 cut(s) 802
HaeIII GGCC 1 cut(s) 522
HapII CCGG 1 cut(s) 507
HhaI GCGC 1 cut(s) 677
Hin1II CATG 3 cut(s) 229, 279, 326
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HinfI GANTC 2 cut(s) 367, 577
HpaII CCGG 1 cut(s) 507
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 4 cut(s) 76, 154, 442, 582
Hpy188III TCNNGA 1 cut(s) 758
Hpy8I GTNNAC 1 cut(s) 748
Hpy99I CGWCG 2 cut(s) 625, 628
HpyAV CCTTC 3 cut(s) 577, 660, 716
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 2 cut(s) 214, 218
HpyCH4V TGCA 4 cut(s) 305, 329, 387, 598
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 356
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 2 cut(s) 214, 218
Hsp92II CATG 3 cut(s) 229, 279, 326
HspAI GCGC 1 cut(s) 675
LmnI GCTCC 1 cut(s) 272
LweI GCATC 1 cut(s) 671
MaeII ACGT 2 cut(s) 214, 218
MaeIII GTNAC 1 cut(s) 782
MboII GAAGA 6 cut(s) 61, 302, 352, 391, 461, 640
MfeI CAATTG 1 cut(s) 345
MluCI AATT 7 cut(s) 63, 170, 318, 345, 462, 544, 553
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 717
MnlI CCTC 8 cut(s) 16, 69, 187, 213, 280, 327, 422, 445
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 2 cut(s) 508, 519
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 2 cut(s) 281, 356
NciI CCSGG 1 cut(s) 508
NlaIII CATG 3 cut(s) 229, 279, 326
PcsI WCGNNNNNNNCGW 1 cut(s) 675
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 1 cut(s) 367
Pfl23II CGTACG 1 cut(s) 215
PkrI GCNGC 1 cut(s) 803
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
Ppu21I YACGTR 2 cut(s) 215, 219
Psp6I CCWGG 1 cut(s) 517
PspEI GGTNACC 1 cut(s) 782
PspGI CCWGG 1 cut(s) 517
PspLI CGTACG 1 cut(s) 215
PspPI GGNCC 1 cut(s) 495
PstI CTGCAG 1 cut(s) 600
RsaI GTAC 4 cut(s) 48, 85, 217, 221
RsaNI GTAC 4 cut(s) 47, 84, 216, 220
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 1 cut(s) 802
Sau96I GGNCC 1 cut(s) 495
ScaI AGTACT 1 cut(s) 48
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 2 cut(s) 508, 519
SfaNI GCATC 1 cut(s) 671
SfcI CTRYAG 1 cut(s) 596
SinI GGWCC 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
SnaBI TACGTA 2 cut(s) 215, 219
Sse9I AATT 7 cut(s) 63, 170, 318, 345, 462, 544, 553
SsiI CCGC 2 cut(s) 284, 375
SspI AATATT 1 cut(s) 421
StyD4I CCNGG 2 cut(s) 506, 517
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 2 cut(s) 217, 221
TaqI TCGA 1 cut(s) 232
TasI AATT 7 cut(s) 63, 170, 318, 345, 462, 544, 553
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TseI GCWGC 1 cut(s) 801
TspDTI ATGAA 6 cut(s) 278, 311, 461, 462, 549, 783
VpaK11BI GGWCC 1 cut(s) 495
XapI RAATTY 3 cut(s) 170, 318, 553
XmnI GAANNNNTTC 1 cut(s) 701
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.