Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Reverse (-)

881150 .. 888742

Gene Structure 7593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2760 bp

ATGGTACCTTCGGGGCCGCCCACTCCAATTGGTGGTGCCCAGTCTGTTTCGCCTTCACTTTTGCGTTCAAATTCTGGAATGTTGGGAGGTCAAGGTTCCCAGTCGGCTTTTCCATCGCTTGCCTCACCACGAACTCAATACGGTAATATGCTTGGCAATGTAGCCAATGTGTCTTCTCTCCTTAATCAGTCGTATGGAAATGGAATTTCGAATCCGGGGCTTTCTGGTCCTGGTAGCAACCAACGTGGAGGTATGGATACTGGTGCTGAATCTGATCCACTTTCTGGTGTTGGCAATGGAATGGGTTTCAGTGTACCTTCTTCGTCATACGGTGCATCAAACATGGCTAATCCCAGTACGTCTGGTCATGGTCATGGTCATGGTCATGGTCAAGGTCAAGGTCAAGGTCAAGGGCAAGGGCAAGGGCAACAATTTTCAAACCCTTCTGGTAACCAACTGTTGATGGAACAACAGCAGCAGCAACTTGAAACACAGCATTTCCAGCATGGTCAGCAGCCAATGCAACAGTTCTCTGCCCCTCACAATACGCAACAGCAGCAGCATCAATTTCAGGCTATTCGAGGAGGCTTAGCTCGTGTTGGGCCGGTAAAGTTAGAGCCCCAATTGACAAATGATCAACATGGACAGCAGCAGTTGCAGTCTTTGAGGAGTCTTGGTCCAGTGAAAATGGAACCCCAACAACTTCAAACTATGAGAAGCTTGCCACCTGTAAAATTGGAACCGCAGCAATCTGATCAGTCATTGTTTTTGCATCAACAGCAGCAACAACAGCAACAACAGCAACAACAGCTCCTCCACATGTCAAGGCAATCTTCTCAGAATGCTGCTGCCCAGATGAACATCATGCATCAGCAGAGGTTATTGCAGTTACAACAGCAACATAACCAGCAACAGCAACAACACCAGCAGCAGCAATTCTTGAAAGCAATGCCTCAACAACGCCCCCAGTTACAGCAGCAGTTTCCGCAGCAGAATCTGCCTATGAGATCTCCTGCAAAACCAGTATATGAGCCTGGAATGTGTGCTCGGCGTTTGACACATTATATGTATCAGCAACAGCACAGGCCTGAAGACAACAACATTGAATTCTGGAGAAAATTTGTTGCTGAATATTTTGTACCCCATGCGAAGAAGAAGTGGTGTGTTTCTATGTATGGAACTGGCCGACAAACAACTGGCGTTTTCCCTCAGGATGTATGGCACTGTGAAATATGCAATCGCAAGCCTGGGCGTGGCTTTGAAGCGACTGTTGAGGTTCTTCCCCGGCTTTTTAAAATCAAGTATGAAAGTGGTACATTGGAGGAGCTTCTTTATGTTGATATGCCGCGCGAGTATCATAATTCATCTGGCCAGATTGTGTTGGACTATGCTAAAGCAATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGGGATGGCCAACTTCGGATAGTTTTCTCTCCAGATCTGAAGATATGCTCTTGGGAATTTTGTGCAAGGCGCCATGAAGAGCTTATCCCTCGAAGATTACTGATACCTCAGGTTAGTCAGCTTGGTGCTGCAGCTCAAAAATACCAGGCTGCTACTCAAAATACATCATCCAATATATCTCTTCCAGAGATACAAAGTAACTGTAATATGTTTGTATCATCAGCGCGACAGTTGGCAAAAACCTTGGAAGTGCCTTTAGTAAATGATTTAGGTTACACAAAGCGATACGTAAGGTGTCTTCAGATATCAGAAGTAGTTAATAGTATGAAAGACTTGATTGATTACAGCCGAGAGACAGGGACTGGACCTATGGAGAGCTTGGCCAAGTTTCCTCGAAGGACAAGTGCTTCATCTGGGTTTCACTGTCAAGCACAACAGTCCGAGGAGCAAATGCAGCAGCAGCAGCAGCAACAACAAACGGTTGCCCAGAATTCAAATGGAGATCCAAGCTCTGTTCAGGCCGCCGCTACGCAAATTGCTGCCAATAATGGTATTGCAAGTGTAAATAATGCTCTGAACACAGCATCCACATCAACTTCTGCAAGCACCATTGTTGGGCTCCTCCATCAGAATTCTATGAACCCCAGACAACAAAGTTCTATGAATAACGCAAACAGTCCATATGGAGGAAGTTCTGTTCAGATTCCATCCCCTGGTTCTTCTAGTACAATCCCACAAACACAACCAAACCCTTCTCCATTCCAGTCACCAATACCCTCATCAAATAATCCCTCTCAAACATCTCAAGGTGTCATGACAGCTGCCAATCACATGGGTGCAGCAAATTCACCAGCAAATATATCCATGCAACAGCCAACCCTTTCGGGCGAGGCTGATCCAAGTGATTCCCATAGCTCTGTCCAGAAAATTATACAGGAAATGATGATGTCCAACCAGCTTAGCGGCCCAGGTAGTATGGTTGGTGCTGGTTCTTTGGGCAACGATGTGAAAAACATGAATGGGATTTTGTCAACAAGCAACAACACAGGATTGAATGGCATGACTAACAATAACTCAGGAATTGGCGGTGCTGGATTTGGGAGTATGGGTGGCGGACTAGGTCAGCAGCCTTGCATGGCGAATGGAATAAGAGCAGCAATGGGAAATAATTCTGTTATGAATGGAAGGGTCGGAATGGCATCAATGGCTCGAGAACAAAGTATGCATCATCAACAACAGATCGATCTGGGGAACCAGTTACTAAGTGGGCTTGGAGCGGTGAACGGCTTTAATAATCTTCAATTTGATTGGAAACATTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

920

Amino Acids

99.92

Weight (kDa)

8.88

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	351 - 605	7e-68	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	3 cut(s)	4, 35, 1503
AccB7I	CCANNNNNTGG	3 cut(s)	32, 284, 2147
AccBSI	CCGCTC	1 cut(s)	2711
AccII	CGCG	3 cut(s)	1348, 1350, 1660
AclWI	GGATC	3 cut(s)	269, 1931, 2324
AcoI	YGGCCR	4 cut(s)	1183, 1369, 1441, 1815
AcsI	RAATTY	8 cut(s)	70, 204, 1106, 1118, 1490, 1924, 2065, 2278
AcuI	CTGAAG	3 cut(s)	1110, 1493, 1718
AcyI	GRCGYC	1 cut(s)	1504
AfaI	GTAC	6 cut(s)	6, 315, 358, 1140, 1315, 2161
AfiI	CCNNNNNNNGG	6 cut(s)	32, 284, 1253, 2049, 2120, 2147
AflIII	ACRYGT	1 cut(s)	819
AjnI	CCWGG	6 cut(s)	229, 1033, 1246, 1578, 2146, 2401
AleI	CACNNNNGTG	1 cut(s)	2268
AloI	GAACNNNNNNTCC	4 cut(s)	2003, 2035, 2115, 2147
Alw21I	GWGCWC	1 cut(s)	1048
Alw26I	GTCTC	1 cut(s)	1781
AlwI	GGATC	3 cut(s)	269, 1931, 2324
AlwNI	CAGNNNCTG	2 cut(s)	997, 1796
Ama87I	CYCGRG	1 cut(s)	2643
AoxI	GGCC	9 cut(s)	14, 602, 1085, 1183, 1369, 1441, 1815, 1953, 2398
ApoI	RAATTY	8 cut(s)	70, 204, 1106, 1118, 1490, 1924, 2065, 2278
Asp700I	GAANNNNTTC	1 cut(s)	2602
Asp718I	GGTACC	1 cut(s)	4
AspLEI	GCGC	3 cut(s)	1350, 1506, 1660
AspS9I	GGNCC	6 cut(s)	14, 227, 602, 677, 1799, 2399
AsuC2I	CCSGG	2 cut(s)	216, 1285
AsuHPI	GGTGA	4 cut(s)	117, 2193, 2274, 2725
AsuII	TTCGAA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	2643
AvaII	GGWCC	3 cut(s)	227, 677, 1799
AxyI	CCTNAGG	2 cut(s)	1209, 1542
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	3 cut(s)	1371, 1443, 1817
BanI	GGYRCC	3 cut(s)	4, 35, 1503
BanII	GRGCYC	2 cut(s)	621, 2055
BarI	GAAGNNNNNNTAC	2 cut(s)	1716, 1748
BauI	CACGAG	1 cut(s)	594
BbsI	GAAGAC	3 cut(s)	165, 1098, 1724
Bbv12I	GWGCWC	1 cut(s)	1048
BccI	CCATC	5 cut(s)	121, 457, 1433, 2067, 2149
BceAI	ACGGC	1 cut(s)	2734
BciT130I	CCWGG	6 cut(s)	231, 1035, 1248, 1580, 2148, 2403
BciVI	GTATCC	1 cut(s)	250
BclI	TGATCA	2 cut(s)	634, 754
BcnI	CCSGG	2 cut(s)	216, 1285
BcoDI	GTCTC	1 cut(s)	1781
BfaI	CTAG	2 cut(s)	2157, 2552
BfmI	CTRYAG	1 cut(s)	1563
BfoI	RGCGCY	1 cut(s)	1507
BfuI	GTATCC	1 cut(s)	250
BglII	AGATCT	2 cut(s)	1007, 1468
BlpI	GCTNAGC	2 cut(s)	589, 2393
Bme1390I	CCNGG	8 cut(s)	216, 231, 1035, 1248, 1285, 1580, 2148, 2403
Bme18I	GGWCC	3 cut(s)	227, 677, 1799
BmeT110I	CYCGRG	1 cut(s)	2643
BmgT120I	GGNCC	6 cut(s)	14, 227, 602, 677, 1799, 2399
BmiI	GGNNCC	9 cut(s)	6, 15, 37, 97, 693, 741, 1505, 2054, 2687
BmrFI	CCNGG	8 cut(s)	216, 231, 1035, 1248, 1285, 1580, 2148, 2403
BmrI	ACTGGG	4 cut(s)	34, 94, 348, 961
BmsI	GCATC	7 cut(s)	344, 571, 781, 877, 2027, 2642, 2668
BmuI	ACTGGG	4 cut(s)	34, 94, 348, 961
BpiI	GAAGAC	3 cut(s)	165, 1098, 1724
BpmI	CTGGAG	2 cut(s)	1132, 1449
Bpu1102I	GCTNAGC	2 cut(s)	589, 2393
Bpu14I	TTCGAA	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	2223
BpuMI	CCSGG	2 cut(s)	216, 1285
Bsa29I	ATCGAT	1 cut(s)	2676
BsaAI	YACGTR	1 cut(s)	1723
BsaBI	GATNNNNATC	1 cut(s)	860
BsaHI	GRCGYC	1 cut(s)	1504
BsaJI	CCNNGG	7 cut(s)	215, 1247, 1283, 1677, 1875, 2146, 2401
BsaXI	ACNNNNNCTCC	8 cut(s)	661, 691, 795, 798, 825, 828, 2527, 2557
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 284, 1253, 2049, 2120, 2147
Bse118I	RCCGGY	1 cut(s)	604
Bse21I	CCTNAGG	2 cut(s)	1209, 1542
Bse3DI	GCAATG	4 cut(s)	163, 301, 954, 2598
Bse8I	GATNNNNATC	1 cut(s)	860
BseBI	CCWGG	6 cut(s)	231, 1035, 1248, 1580, 2148, 2403
BseCI	ATCGAT	1 cut(s)	2676
BseDI	CCNNGG	7 cut(s)	215, 1247, 1283, 1677, 1875, 2146, 2401
BseGI	GGATG	5 cut(s)	1219, 1444, 1601, 2018, 2141
BseJI	GATNNNNATC	1 cut(s)	860
BseLI	CCNNNNNNNGG	6 cut(s)	32, 284, 1253, 2049, 2120, 2147
BseMI	GCAATG	4 cut(s)	163, 301, 954, 2598
BseMII	CTCAG	4 cut(s)	851, 1223, 1556, 2523
BseRI	GAGGAG	6 cut(s)	597, 682, 803, 1337, 1892, 2045
BseSI	GKGCMC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	2292
Bsh1236I	CGCG	3 cut(s)	1348, 1350, 1660
BshFI	GGCC	9 cut(s)	16, 604, 1087, 1185, 1371, 1443, 1817, 1955, 2400
BshNI	GGYRCC	3 cut(s)	4, 35, 1503
BshVI	ATCGAT	1 cut(s)	2676
BsiHKAI	GWGCWC	1 cut(s)	1048
BsiHKCI	CYCGRG	1 cut(s)	2643
BsiSI	CCGG	3 cut(s)	215, 605, 1285
BslFI	GGGAC	1 cut(s)	1807
BslI	CCNNNNNNNGG	6 cut(s)	32, 284, 1253, 2049, 2120, 2147
BsmAI	GTCTC	1 cut(s)	1781
BsmFI	GGGAC	1 cut(s)	1807
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	9 cut(s)	16, 604, 1087, 1185, 1371, 1443, 1817, 1955, 2400
BsoBI	CYCGRG	1 cut(s)	2643
Bsp119I	TTCGAA	1 cut(s)	209
Bsp1286I	GDGCHC	4 cut(s)	40, 621, 1048, 2055
Bsp143I	GATC	9 cut(s)	274, 634, 754, 1007, 1468, 1936, 2329, 2673, 2677
Bsp1720I	GCTNAGC	2 cut(s)	589, 2393
BspANI	GGCC	9 cut(s)	16, 604, 1087, 1185, 1371, 1443, 1817, 1955, 2400
BspCNI	CTCAG	4 cut(s)	850, 1222, 1555, 2522
BspDI	ATCGAT	1 cut(s)	2676
BspFNI	CGCG	3 cut(s)	1348, 1350, 1660
BspHI	TCATGA	1 cut(s)	2247
BspLI	GGNNCC	9 cut(s)	6, 15, 37, 97, 693, 741, 1505, 2054, 2687
BspMAI	CTGCAG	1 cut(s)	1567
BspPI	GGATC	3 cut(s)	269, 1931, 2324
BspQI	GCTCTTC	1 cut(s)	1506
BspT104I	TTCGAA	1 cut(s)	209
BspT107I	GGYRCC	3 cut(s)	4, 35, 1503
BsrBI	CCGCTC	1 cut(s)	2711
BsrDI	GCAATG	4 cut(s)	163, 301, 954, 2598
BsrFI	RCCGGY	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	7 cut(s)	215, 1247, 1283, 1677, 1875, 2146, 2401
BssMI	GATC	9 cut(s)	274, 634, 754, 1007, 1468, 1936, 2329, 2673, 2677
BssNI	GRCGYC	1 cut(s)	1504
BssSI	CACGAG	1 cut(s)	594
BssT1I	CCWWGG	1 cut(s)	1677
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	6 cut(s)	231, 1035, 1248, 1580, 2148, 2403
Bst6I	CTCTTC	2 cut(s)	1506, 1620
BstACI	GRCGYC	1 cut(s)	1504
BstAPI	GCANNNNNTGC	3 cut(s)	520, 655, 997
BstBAI	YACGTR	1 cut(s)	1723
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	4 cut(s)	120, 722, 1244, 2038
BstDEI	CTNAG	7 cut(s)	589, 837, 1209, 1542, 2393, 2509, 2696
BstEII	GGTNACC	1 cut(s)	449
BstF5I	GGATG	5 cut(s)	1219, 1444, 1601, 2018, 2141
BstFNI	CGCG	3 cut(s)	1348, 1350, 1660
BstH2I	RGCGCY	1 cut(s)	1507
BstHHI	GCGC	3 cut(s)	1350, 1506, 1660
BstKTI	GATC	9 cut(s)	277, 637, 757, 1010, 1471, 1939, 2332, 2676, 2680
BstMAI	GTCTC	1 cut(s)	1781
BstMBI	GATC	9 cut(s)	274, 634, 754, 1007, 1468, 1936, 2329, 2673, 2677
BstNI	CCWGG	6 cut(s)	231, 1035, 1248, 1580, 2148, 2403
BstNSI	RCATGY	1 cut(s)	823
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	8 cut(s)	214, 229, 1033, 1246, 1283, 1578, 2146, 2401
BstSFI	CTRYAG	1 cut(s)	1563
BstSLI	GKGCMC	1 cut(s)	40
BstSNI	TACGTA	1 cut(s)	1723
BstUI	CGCG	3 cut(s)	1348, 1350, 1660
BstV2I	GAAGAC	3 cut(s)	165, 1098, 1724
BstX2I	RGATCY	3 cut(s)	1007, 1468, 1936
BstXI	CCANNNNNNTGG	1 cut(s)	2266
BstYI	RGATCY	3 cut(s)	1007, 1468, 1936
Bsu15I	ATCGAT	1 cut(s)	2676
Bsu36I	CCTNAGG	2 cut(s)	1209, 1542
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	9 cut(s)	16, 604, 1087, 1185, 1371, 1443, 1817, 1955, 2400
BsuTUI	ATCGAT	1 cut(s)	2676
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	5 cut(s)	1219, 1444, 1601, 2018, 2141
BtsIMutI	CAGTG	4 cut(s)	316, 687, 1222, 1855
Cac8I	GCNNGC	4 cut(s)	120, 722, 1244, 2038
CaiI	CAGNNNCTG	2 cut(s)	997, 1796
CciI	TCATGA	1 cut(s)	2247
CfoI	GCGC	3 cut(s)	1350, 1506, 1660
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	6 cut(s)	14, 227, 602, 677, 1799, 2399
ClaI	ATCGAT	1 cut(s)	2676
Csp6I	GTAC	6 cut(s)	5, 314, 357, 1139, 1314, 2160
CspCI	CAANNNNNGTGG	4 cut(s)	10, 45, 226, 261
CviQI	GTAC	6 cut(s)	5, 314, 357, 1139, 1314, 2160
DdeI	CTNAG	7 cut(s)	589, 837, 1209, 1542, 2393, 2509, 2696
DinI	GGCGCC	1 cut(s)	1505
DpnI	GATC	9 cut(s)	276, 636, 756, 1009, 1470, 1938, 2331, 2675, 2679
DpnII	GATC	9 cut(s)	274, 634, 754, 1007, 1468, 1936, 2329, 2673, 2677
DraI	TTTAAA	1 cut(s)	1294
EaeI	YGGCCR	4 cut(s)	1183, 1369, 1441, 1815
Eam1104I	CTCTTC	2 cut(s)	1506, 1620
EarI	CTCTTC	2 cut(s)	1506, 1620
EciI	GGCGGA	1 cut(s)	2562
Eco105I	TACGTA	1 cut(s)	1723
Eco130I	CCWWGG	1 cut(s)	1677
Eco147I	AGGCCT	1 cut(s)	1087
Eco24I	GRGCYC	2 cut(s)	621, 2055
Eco32I	GATATC	1 cut(s)	1740
Eco47I	GGWCC	3 cut(s)	227, 677, 1799
Eco57I	CTGAAG	3 cut(s)	1110, 1493, 1718
Eco81I	CCTNAGG	2 cut(s)	1209, 1542
Eco88I	CYCGRG	1 cut(s)	2643
Eco91I	GGTNACC	1 cut(s)	449
EcoO65I	GGTNACC	1 cut(s)	449
EcoRI	GAATTC	3 cut(s)	1106, 1924, 2065
EcoRII	CCWGG	6 cut(s)	229, 1033, 1246, 1578, 2146, 2401
EcoRV	GATATC	1 cut(s)	1740
EcoT14I	CCWWGG	1 cut(s)	1677
EcoT22I	ATGCAT	2 cut(s)	870, 2661
EcoT38I	GRGCYC	2 cut(s)	621, 2055
EgeI	GGCGCC	1 cut(s)	1505
EheI	GGCGCC	1 cut(s)	1505
ErhI	CCWWGG	1 cut(s)	1677
FalI	AAGNNNNNCTT	2 cut(s)	817, 849
FaqI	GGGAC	1 cut(s)	1807
FauNDI	CATATG	1 cut(s)	2116
FbaI	TGATCA	2 cut(s)	634, 754
FokI	GGATG	5 cut(s)	1226, 1451, 1588, 2005, 2128
FriOI	GRGCYC	2 cut(s)	621, 2055
FspBI	CTAG	2 cut(s)	2157, 2552
GlaI	GCGC	3 cut(s)	1349, 1505, 1659
GsuI	CTGGAG	2 cut(s)	1132, 1449
HaeII	RGCGCY	1 cut(s)	1507
HaeIII	GGCC	9 cut(s)	16, 604, 1087, 1185, 1371, 1443, 1817, 1955, 2400
HapII	CCGG	3 cut(s)	215, 605, 1285
HhaI	GCGC	3 cut(s)	1350, 1506, 1660
Hin1I	GRCGYC	1 cut(s)	1504
Hin6I	GCGC	3 cut(s)	1348, 1504, 1658
HinP1I	GCGC	3 cut(s)	1348, 1504, 1658
HincII	GTYRAC	1 cut(s)	2466
HindII	GTYRAC	1 cut(s)	2466
HindIII	AAGCTT	1 cut(s)	718
HinfI	GANTC	6 cut(s)	211, 269, 670, 994, 2137, 2339
HpaII	CCGG	3 cut(s)	215, 605, 1285
HphI	GGTGA	4 cut(s)	117, 2193, 2274, 2725
Hpy166II	GTNNAC	3 cut(s)	314, 2466, 2716
Hpy8I	GTNNAC	3 cut(s)	314, 2466, 2716
HpyAV	CCTTC	7 cut(s)	18, 63, 327, 453, 1824, 2196, 2613
HpyCH4IV	ACGT	3 cut(s)	244, 359, 1722
HpyF3I	CTNAG	7 cut(s)	589, 837, 1209, 1542, 2393, 2509, 2696
HpySE526I	ACGT	3 cut(s)	244, 359, 1722
Hsp92I	GRCGYC	1 cut(s)	1504
HspAI	GCGC	3 cut(s)	1348, 1504, 1658
KasI	GGCGCC	1 cut(s)	1503
KpnI	GGTACC	1 cut(s)	8
Ksp22I	TGATCA	2 cut(s)	634, 754
Kzo9I	GATC	9 cut(s)	274, 634, 754, 1007, 1468, 1936, 2329, 2673, 2677
LguI	GCTCTTC	1 cut(s)	1506
LmnI	GCTCC	5 cut(s)	816, 1324, 1879, 2058, 2708
LweI	GCATC	7 cut(s)	344, 571, 781, 877, 2027, 2642, 2668
MaeI	CTAG	2 cut(s)	2157, 2552
MaeII	ACGT	3 cut(s)	244, 359, 1722
MaeIII	GTNAC	7 cut(s)	449, 888, 969, 1631, 1706, 2199, 2691
MalI	GATC	9 cut(s)	276, 636, 756, 1009, 1470, 1938, 2331, 2675, 2679
MbiI	CCGCTC	1 cut(s)	2711
MboI	GATC	9 cut(s)	274, 634, 754, 1007, 1468, 1936, 2329, 2673, 2677
MfeI	CAATTG	2 cut(s)	27, 623
MflI	RGATCY	3 cut(s)	1007, 1468, 1936
MhlI	GDGCHC	4 cut(s)	40, 621, 1048, 2055
MlsI	TGGCCA	3 cut(s)	1371, 1443, 1817
MluNI	TGGCCA	3 cut(s)	1371, 1443, 1817
Mly113I	GGCGCC	1 cut(s)	1504
MlyI	GAGTC	1 cut(s)	679
MmeI	TCCRAC	3 cut(s)	1362, 2409, 2605
Mox20I	TGGCCA	3 cut(s)	1371, 1443, 1817
Mph1103I	ATGCAT	2 cut(s)	870, 2661
MroXI	GAANNNNTTC	1 cut(s)	2602
MscI	TGGCCA	3 cut(s)	1371, 1443, 1817
MseI	TTAA	4 cut(s)	183, 1293, 1752, 2724
MslI	CAYNNNNRTG	4 cut(s)	372, 378, 384, 2268
Msp20I	TGGCCA	3 cut(s)	1371, 1443, 1817
MspA1I	CMGCKG	1 cut(s)	2255
MspI	CCGG	3 cut(s)	215, 605, 1285
MspR9I	CCNGG	8 cut(s)	216, 231, 1035, 1248, 1285, 1580, 2148, 2403
MunI	CAATTG	2 cut(s)	27, 623
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	6 cut(s)	231, 1035, 1248, 1580, 2148, 2403
MvnI	CGCG	3 cut(s)	1348, 1350, 1660
NarI	GGCGCC	1 cut(s)	1504
NciI	CCSGG	2 cut(s)	216, 1285
NdeI	CATATG	1 cut(s)	2116
NdeII	GATC	9 cut(s)	274, 634, 754, 1007, 1468, 1936, 2329, 2673, 2677
NlaIV	GGNNCC	9 cut(s)	6, 15, 37, 97, 693, 741, 1505, 2054, 2687
NmeAIII	GCCGAG	2 cut(s)	1027, 1808
NmuCI	GTSAC	1 cut(s)	2199
NsiI	ATGCAT	2 cut(s)	870, 2661
NspI	RCATGY	1 cut(s)	823
NspV	TTCGAA	1 cut(s)	209
OliI	CACNNNNGTG	1 cut(s)	2268
PaeR7I	CTCGAG	1 cut(s)	2643
PagI	TCATGA	1 cut(s)	2247
PceI	AGGCCT	1 cut(s)	1087
PciI	ACATGT	1 cut(s)	819
PciSI	GCTCTTC	1 cut(s)	1506
PctI	GAATGC	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	2602
PfeI	GAWTC	5 cut(s)	211, 269, 994, 2137, 2339
PflFI	GACNNNGTC	1 cut(s)	2553
PflMI	CCANNNNNTGG	3 cut(s)	32, 284, 2147
PleI	GAGTC	1 cut(s)	678
PluTI	GGCGCC	1 cut(s)	1507
PpsI	GAGTC	1 cut(s)	678
Ppu21I	YACGTR	1 cut(s)	1723
PscI	ACATGT	1 cut(s)	819
Psp6I	CCWGG	6 cut(s)	229, 1033, 1246, 1578, 2146, 2401
PspEI	GGTNACC	1 cut(s)	449
PspGI	CCWGG	6 cut(s)	229, 1033, 1246, 1578, 2146, 2401
PspN4I	GGNNCC	9 cut(s)	6, 15, 37, 97, 693, 741, 1505, 2054, 2687
PspPI	GGNCC	6 cut(s)	14, 227, 602, 677, 1799, 2399
PstI	CTGCAG	1 cut(s)	1567
PstNI	CAGNNNCTG	2 cut(s)	997, 1796
PsuI	RGATCY	3 cut(s)	1007, 1468, 1936
PsyI	GACNNNGTC	1 cut(s)	2553
PvuII	CAGCTG	1 cut(s)	2255
RsaI	GTAC	6 cut(s)	6, 315, 358, 1140, 1315, 2161
RsaNI	GTAC	6 cut(s)	5, 314, 357, 1139, 1314, 2160
RseI	CAYNNNNRTG	4 cut(s)	372, 378, 384, 2268
SapI	GCTCTTC	1 cut(s)	1506
SaqAI	TTAA	4 cut(s)	183, 1293, 1752, 2724
Sau3AI	GATC	9 cut(s)	274, 634, 754, 1007, 1468, 1936, 2329, 2673, 2677
Sau96I	GGNCC	6 cut(s)	14, 227, 602, 677, 1799, 2399
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	8 cut(s)	216, 231, 1035, 1248, 1285, 1580, 2148, 2403
SduI	GDGCHC	4 cut(s)	40, 621, 1048, 2055
SfaNI	GCATC	7 cut(s)	344, 571, 781, 877, 2027, 2642, 2668
SfcI	CTRYAG	1 cut(s)	1563
SfoI	GGCGCC	1 cut(s)	1505
Sfr274I	CTCGAG	1 cut(s)	2643
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	3 cut(s)	227, 677, 1799
SlaI	CTCGAG	1 cut(s)	2643
SmiMI	CAYNNNNRTG	4 cut(s)	372, 378, 384, 2268
SmlI	CTYRAG	2 cut(s)	2238, 2643
SmoI	CTYRAG	2 cut(s)	2238, 2643
SnaBI	TACGTA	1 cut(s)	1723
SseBI	AGGCCT	1 cut(s)	1087
SspDI	GGCGCC	1 cut(s)	1503
SspI	AATATT	1 cut(s)	1133
SspMI	CTAG	2 cut(s)	2157, 2552
StuI	AGGCCT	1 cut(s)	1087
StyD4I	CCNGG	8 cut(s)	214, 229, 1033, 1246, 1283, 1578, 2146, 2401
StyI	CCWWGG	1 cut(s)	1677
TaiI	ACGT	3 cut(s)	247, 362, 1725
TaqI	TCGA	6 cut(s)	209, 580, 1525, 1828, 2644, 2676
TatI	WGTACW	1 cut(s)	2159
TauI	GCSGC	5 cut(s)	19, 1348, 1958, 1961, 2400
TfiI	GAWTC	5 cut(s)	211, 269, 994, 2137, 2339
Tru1I	TTAA	4 cut(s)	183, 1293, 1752, 2724
Tru9I	TTAA	4 cut(s)	183, 1293, 1752, 2724
TscAI	CASTG	4 cut(s)	316, 687, 1229, 1862
TseFI	GTSAC	1 cut(s)	2199
Tsp45I	GTSAC	1 cut(s)	2199
TspRI	CASTG	4 cut(s)	316, 687, 1229, 1862
Tth111I	GACNNNGTC	1 cut(s)	2553
Van91I	CCANNNNNTGG	3 cut(s)	32, 284, 2147
VpaK11BI	GGWCC	3 cut(s)	227, 677, 1799
XapI	RAATTY	8 cut(s)	70, 204, 1106, 1118, 1490, 1924, 2065, 2278
XceI	RCATGY	1 cut(s)	823
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1928, 2696
XhoI	CTCGAG	1 cut(s)	2643
XmnI	GAANNNNTTC	1 cut(s)	2602
XspI	CTAG	2 cut(s)	2157, 2552
Zsp2I	ATGCAT	2 cut(s)	870, 2661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.