pycom05g04970

Belongs to the MCM family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
5886161 .. 5888001
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g04970.1

Sequence Viewer

Length: 984 bp
ATGGCTTCCGATTCTTCTCCGGCGGACTTCAACAATGGGCCTTCTTCTCCTGATGACTTCTTATCGAGCCCAATCGGCAACACCTTCTCATCTCCGGTGGACACCACCCACCGCAGTCGGCGTCGATCCATTACCCCCTTGGAATTTGACACCCCGCGGGCGCAGCGGTCCCGGTTCGCCGCATCCGAAACAACACCAACGGGCACACGCCGCACCAACGGCCATAGTGCTGGCGCTGCCCCGACGCCCTCCTCCACTGACGGTGATGTCCCACCATCTTCTGAAGGCGGCGATGGGTACGGTGTGGACGAGGACCGACCCACATTTGTCTGGGGCACGAACATCAGCGTGAACGACGTTAAGGTGGCGATTGTTAGGTTTTTAAAGAATTTTCGGGATGAGTCGCAGTGGAATATGGAGAGTGAGTACCTTACAGAAGGGAAGTACATTGAGGCCATCAAGAGAGTTATTGAGATGGAAGATGATTCGCTTGATGTTGATGCGCGCAATGTGTTTGATTATGATTCCGACTTGTATGCGAAGATGGTCAGGTACCCACTCGAGGTTCTTGCGATTTTCGATATTGTTTTGATGGAAATGCTGCCCGTCATAAACCCGTTGTTCGAAAAGCACATCCAAACTCGGATTTATAATCTCAAAACATCCACCTCGATGAGAAATCTCAACCCATCTGACATTGAGAGGATGGTTTCGTTGAAGGGAATGATTATTCGGTCTAGTTCAATAATACCTGAGATAAGGGAAGCAATATTTAGATGCCTTGTGTGTGGCTACTACTCCGACCCACTTCCTGTAGAGAAAGGGCGAATATCGGAGCCTACAATATGTTTGAAGGAAGAGTGTCAAGCCAGGAATTCCATGACACTGGTTCACAATCGATGCAGATTTACAGATAAACAGATTGTGAGGCTCCAGGAGACTCCTGATGATCGATCCCTGAAGGAGGGACACCACATACAGTGA

Protein Analysis

328

Amino Acids

36.9

Weight (kDa)

5.23

Isoelectric Point (pI)

59.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCM_N PF14551 124 - 218 1e-12 MCM N-terminal domain
MCM_OB PF17207 225 - 317 2.8e-23 MCM OB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 651
AasI GACNNNNNNGTC 1 cut(s) 266
Acc65I GGTACC 1 cut(s) 552
AccB1I GGYRCC 1 cut(s) 552
AccII CGCG 2 cut(s) 157, 505
AciI CCGC 8 cut(s) 23, 112, 155, 157, 166, 180, 211, 288
AclWI GGATC 2 cut(s) 120, 948
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 3 cut(s) 143, 388, 874
AcuI CTGAAG 2 cut(s) 303, 980
AcyI GRCGYC 2 cut(s) 121, 245
AfaI GTAC 4 cut(s) 299, 428, 446, 554
AfiI CCNNNNNNNGG 2 cut(s) 562, 964
AgsI TTSAA 4 cut(s) 31, 718, 744, 853
AjnI CCWGG 2 cut(s) 869, 933
Alw26I GTCTC 1 cut(s) 932
AlwI GGATC 2 cut(s) 120, 948
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 3 cut(s) 38, 220, 453
ApeKI GCWGC 3 cut(s) 163, 236, 601
ApoI RAATTY 3 cut(s) 143, 388, 874
Asp718I GGTACC 1 cut(s) 552
AspLEI GCGC 4 cut(s) 163, 236, 505, 507
AspS9I GGNCC 3 cut(s) 38, 168, 313
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 275
AsuII TTCGAA 1 cut(s) 624
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 2 cut(s) 168, 313
BaeGI GKGCMC 2 cut(s) 206, 338
BanI GGYRCC 1 cut(s) 552
BanII GRGCYC 1 cut(s) 71
BbvI GCAGC 3 cut(s) 175, 223, 588
BccI CCATC 8 cut(s) 283, 287, 464, 469, 538, 586, 697, 700
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 4 cut(s) 518, 551, 552, 585
BciT130I CCWGG 2 cut(s) 871, 935
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 932
BfaI CTAG 1 cut(s) 738
BfmI CTRYAG 1 cut(s) 813
BfoI RGCGCY 1 cut(s) 237
BglI GCCNNNNNGGC 1 cut(s) 75
BisI GCNGC 6 cut(s) 164, 180, 211, 237, 289, 602
BlsI GCNGC 6 cut(s) 165, 181, 212, 238, 290, 603
Bme1390I CCNGG 3 cut(s) 172, 871, 935
Bme18I GGWCC 2 cut(s) 168, 313
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 3 cut(s) 38, 168, 313
BmiI GGNNCC 4 cut(s) 170, 554, 837, 932
BmrFI CCNGG 3 cut(s) 172, 871, 935
BmsI GCATC 4 cut(s) 191, 490, 767, 890
BpmI CTGGAG 1 cut(s) 917
Bpu14I TTCGAA 1 cut(s) 624
BpuMI CCSGG 1 cut(s) 172
Bsa29I ATCGAT 2 cut(s) 898, 952
BsaHI GRCGYC 2 cut(s) 121, 245
BsaJI CCNNGG 2 cut(s) 138, 155
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 2 cut(s) 562, 964
Bse1I ACTGG 1 cut(s) 891
Bse3DI GCAATG 1 cut(s) 514
BseBI CCWGG 2 cut(s) 871, 935
BseCI ATCGAT 2 cut(s) 898, 952
BseDI CCNNGG 2 cut(s) 138, 155
BseGI GGATG 5 cut(s) 182, 403, 633, 662, 711
BseLI CCNNNNNNNGG 2 cut(s) 562, 964
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 1 cut(s) 891
BsePI GCGCGC 1 cut(s) 503
BseRI GAGGAG 1 cut(s) 241
BseSI GKGCMC 2 cut(s) 206, 338
BseXI GCAGC 3 cut(s) 175, 223, 588
Bsh1236I CGCG 2 cut(s) 157, 505
BshFI GGCC 3 cut(s) 40, 222, 455
BshNI GGYRCC 1 cut(s) 552
BshVI ATCGAT 2 cut(s) 898, 952
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 3 cut(s) 20, 95, 172
BslFI GGGAC 2 cut(s) 154, 254
BslI CCNNNNNNNGG 2 cut(s) 562, 964
BsmAI GTCTC 1 cut(s) 932
BsmFI GGGAC 2 cut(s) 154, 254
BsnI GGCC 3 cut(s) 40, 222, 455
BsoBI CYCGRG 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 624
Bsp1286I GDGCHC 3 cut(s) 71, 206, 338
Bsp143I GATC 3 cut(s) 125, 949, 953
BspACI CCGC 8 cut(s) 23, 112, 155, 157, 166, 180, 211, 288
BspANI GGCC 3 cut(s) 40, 222, 455
BspCNI CTCAG 1 cut(s) 745
BspDI ATCGAT 2 cut(s) 898, 952
BspFNI CGCG 2 cut(s) 157, 505
BspLI GGNNCC 4 cut(s) 170, 554, 837, 932
BspPI GGATC 2 cut(s) 120, 948
BspT104I TTCGAA 1 cut(s) 624
BspT107I GGYRCC 1 cut(s) 552
BsrDI GCAATG 1 cut(s) 514
BsrI ACTGG 1 cut(s) 891
BssECI CCNNGG 2 cut(s) 138, 155
BssHII GCGCGC 1 cut(s) 503
BssMI GATC 3 cut(s) 125, 949, 953
BssNI GRCGYC 2 cut(s) 121, 245
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 871, 935
Bst4CI ACNGT 3 cut(s) 263, 302, 981
Bst6I CTCTTC 1 cut(s) 852
BstACI GRCGYC 2 cut(s) 121, 245
BstBI TTCGAA 1 cut(s) 624
BstC8I GCNNGC 3 cut(s) 159, 232, 505
BstDEI CTNAG 1 cut(s) 753
BstDSI CCRYGG 1 cut(s) 155
BstENI CCTNNNNNAGG 1 cut(s) 962
BstF5I GGATG 5 cut(s) 182, 403, 633, 662, 711
BstFNI CGCG 2 cut(s) 157, 505
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 4 cut(s) 163, 236, 505, 507
BstKTI GATC 3 cut(s) 128, 952, 956
BstMAI GTCTC 1 cut(s) 932
BstMBI GATC 3 cut(s) 125, 949, 953
BstMWI GCNNNNNNNGC 5 cut(s) 75, 163, 210, 219, 236
BstNI CCWGG 2 cut(s) 871, 935
BstSCI CCNGG 3 cut(s) 170, 869, 933
BstSFI CTRYAG 1 cut(s) 813
BstSLI GKGCMC 2 cut(s) 206, 338
BstUI CGCG 2 cut(s) 157, 505
BstV1I GCAGC 3 cut(s) 175, 223, 588
BstXI CCANNNNNNTGG 2 cut(s) 230, 886
Bsu15I ATCGAT 2 cut(s) 898, 952
BsuRI GGCC 3 cut(s) 40, 222, 455
BsuTUI ATCGAT 2 cut(s) 898, 952
BtgI CCRYGG 1 cut(s) 155
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 5 cut(s) 182, 403, 633, 662, 711
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 3 cut(s) 255, 413, 884
Cac8I GCNNGC 3 cut(s) 159, 232, 505
CfoI GCGC 4 cut(s) 163, 236, 505, 507
Cfr13I GGNCC 3 cut(s) 38, 168, 313
Cfr42I CCGCGG 1 cut(s) 158
ClaI ATCGAT 2 cut(s) 898, 952
CseI GACGC 2 cut(s) 110, 253
Csp6I GTAC 4 cut(s) 298, 427, 445, 553
CviAII CATG 1 cut(s) 880
CviJI RGCY 9 cut(s) 5, 40, 69, 222, 455, 792, 838, 869, 931
CviKI_1 RGCY 9 cut(s) 5, 40, 69, 222, 455, 792, 838, 869, 931
CviQI GTAC 4 cut(s) 298, 427, 445, 553
DdeI CTNAG 1 cut(s) 753
DpnI GATC 3 cut(s) 127, 951, 955
DpnII GATC 3 cut(s) 125, 949, 953
DraI TTTAAA 1 cut(s) 384
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 852
EarI CTCTTC 1 cut(s) 852
EciI GGCGGA 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 168, 313
Eco57I CTGAAG 2 cut(s) 303, 980
Eco88I CYCGRG 1 cut(s) 560
EcoNI CCTNNNNNAGG 1 cut(s) 962
EcoRI GAATTC 1 cut(s) 874
EcoRII CCWGG 2 cut(s) 869, 933
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 883
FaiI YATR 9 cut(s) 225, 416, 522, 537, 611, 651, 847, 881, 977
FaqI GGGAC 2 cut(s) 154, 254
FatI CATG 1 cut(s) 879
FauI CCCGC 2 cut(s) 150, 162
Fnu4HI GCNGC 6 cut(s) 164, 180, 211, 237, 289, 602
FokI GGATG 5 cut(s) 169, 410, 620, 649, 718
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 6 cut(s) 164, 180, 211, 237, 289, 602
FspBI CTAG 1 cut(s) 738
GlaI GCGC 4 cut(s) 162, 235, 504, 506
GluI GCNGC 6 cut(s) 164, 180, 211, 237, 289, 602
GsuI CTGGAG 1 cut(s) 917
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 3 cut(s) 40, 222, 455
HapII CCGG 3 cut(s) 20, 95, 172
HgaI GACGC 2 cut(s) 110, 253
HhaI GCGC 4 cut(s) 163, 236, 505, 507
Hin1I GRCGYC 2 cut(s) 121, 245
Hin1II CATG 1 cut(s) 883
Hin6I GCGC 4 cut(s) 161, 234, 503, 505
HinP1I GCGC 4 cut(s) 161, 234, 503, 505
HinfI GANTC 5 cut(s) 11, 401, 485, 524, 940
HpaII CCGG 3 cut(s) 20, 95, 172
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 4 cut(s) 100, 307, 352, 892
Hpy188I TCNGA 8 cut(s) 10, 187, 283, 529, 645, 694, 802, 835
Hpy188III TCNNGA 4 cut(s) 50, 395, 460, 944
Hpy8I GTNNAC 4 cut(s) 100, 307, 352, 892
Hpy99I CGWCG 3 cut(s) 126, 247, 359
HpyAV CCTTC 7 cut(s) 51, 94, 278, 431, 712, 847, 955
HpyCH4III ACNGT 3 cut(s) 263, 302, 981
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 1 cut(s) 903
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 163, 210, 219, 236
HpyF3I CTNAG 1 cut(s) 753
HpySE526I ACGT 1 cut(s) 357
Hsp92I GRCGYC 2 cut(s) 121, 245
Hsp92II CATG 1 cut(s) 883
HspAI GCGC 4 cut(s) 161, 234, 503, 505
KpnI GGTACC 1 cut(s) 556
KspI CCGCGG 1 cut(s) 158
Kzo9I GATC 3 cut(s) 125, 949, 953
LmnI GCTCC 2 cut(s) 835, 936
Lsp1109I GCAGC 3 cut(s) 175, 223, 588
LweI GCATC 4 cut(s) 191, 490, 767, 890
MaeI CTAG 1 cut(s) 738
MaeII ACGT 1 cut(s) 357
MalI GATC 3 cut(s) 127, 951, 955
MboI GATC 3 cut(s) 125, 949, 953
MboII GAAGA 6 cut(s) 6, 36, 270, 491, 553, 869
MhlI GDGCHC 3 cut(s) 71, 206, 338
MluCI AATT 3 cut(s) 143, 388, 874
MlyI GAGTC 2 cut(s) 410, 934
MmeI TCCRAC 2 cut(s) 552, 825
MnlI CCTC 9 cut(s) 259, 262, 304, 445, 556, 679, 696, 921, 958
MseI TTAA 2 cut(s) 360, 383
MslI CAYNNNNRTG 2 cut(s) 347, 671
MspA1I CMGCKG 2 cut(s) 157, 166
MspI CCGG 3 cut(s) 20, 95, 172
MspR9I CCNGG 3 cut(s) 172, 871, 935
MvaI CCWGG 2 cut(s) 871, 935
MvnI CGCG 2 cut(s) 157, 505
MwoI GCNNNNNNNGC 5 cut(s) 75, 163, 210, 219, 236
NciI CCSGG 1 cut(s) 172
NdeII GATC 3 cut(s) 125, 949, 953
NlaIII CATG 1 cut(s) 883
NlaIV GGNNCC 4 cut(s) 170, 554, 837, 932
NspV TTCGAA 1 cut(s) 624
PaeR7I CTCGAG 1 cut(s) 560
PauI GCGCGC 1 cut(s) 503
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 306
PfeI GAWTC 3 cut(s) 11, 485, 524
PfoI TCCNGGA 1 cut(s) 933
PkrI GCNGC 6 cut(s) 165, 181, 212, 238, 290, 603
PleI GAGTC 2 cut(s) 409, 934
PpsI GAGTC 2 cut(s) 409, 934
PsiI TTATAA 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 869, 933
PspGI CCWGG 2 cut(s) 869, 933
PspN4I GGNNCC 4 cut(s) 170, 554, 837, 932
PspPI GGNCC 3 cut(s) 38, 168, 313
PspXI VCTCGAGB 1 cut(s) 560
PteI GCGCGC 1 cut(s) 503
RsaI GTAC 4 cut(s) 299, 428, 446, 554
RsaNI GTAC 4 cut(s) 298, 427, 445, 553
RseI CAYNNNNRTG 2 cut(s) 347, 671
SacII CCGCGG 1 cut(s) 158
SaqAI TTAA 2 cut(s) 360, 383
SatI GCNGC 6 cut(s) 164, 180, 211, 237, 289, 602
Sau3AI GATC 3 cut(s) 125, 949, 953
Sau96I GGNCC 3 cut(s) 38, 168, 313
SchI GAGTC 2 cut(s) 410, 934
ScrFI CCNGG 3 cut(s) 172, 871, 935
SduI GDGCHC 3 cut(s) 71, 206, 338
SetI ASST 9 cut(s) 86, 360, 366, 380, 432, 554, 567, 671, 754
SfaNI GCATC 4 cut(s) 191, 490, 767, 890
SfcI CTRYAG 1 cut(s) 813
Sfr274I CTCGAG 1 cut(s) 560
Sfr303I CCGCGG 1 cut(s) 158
SfuI TTCGAA 1 cut(s) 624
SgrBI CCGCGG 1 cut(s) 158
SinI GGWCC 2 cut(s) 168, 313
SlaI CTCGAG 1 cut(s) 560
SmiMI CAYNNNNRTG 2 cut(s) 347, 671
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 3 cut(s) 143, 388, 874
SsiI CCGC 8 cut(s) 23, 112, 155, 157, 166, 180, 211, 288
SspI AATATT 1 cut(s) 771
SspMI CTAG 1 cut(s) 738
StyD4I CCNGG 3 cut(s) 170, 869, 933
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 3 cut(s) 263, 302, 981
TaiI ACGT 1 cut(s) 360
TaqI TCGA 8 cut(s) 65, 124, 561, 579, 624, 671, 898, 952
TaqII GACCGA 2 cut(s) 330, 723
TasI AATT 3 cut(s) 143, 388, 874
TatI WGTACW 1 cut(s) 444
TauI GCSGC 3 cut(s) 182, 213, 291
TfiI GAWTC 3 cut(s) 11, 485, 524
Tru1I TTAA 2 cut(s) 360, 383
Tru9I TTAA 2 cut(s) 360, 383
TscAI CASTG 3 cut(s) 262, 413, 891
TseI GCWGC 3 cut(s) 163, 236, 601
TspRI CASTG 3 cut(s) 262, 413, 891
VpaK11BI GGWCC 2 cut(s) 168, 313
XagI CCTNNNNNAGG 1 cut(s) 962
XapI RAATTY 3 cut(s) 143, 388, 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 560
XspI CTAG 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.