Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008419

Physical Location & Seq

Genomic Coordinates Forward (+)

23392188 .. 23394594

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTTCCGACTCTTCTGCACCCAATTTCAACAACGGGCCTTCCTCTCCCGATGACTCCTTCTCCAGCCCAATCGGCAACACCTTCTCTTCTCCGGCCGACGCCGCCGCCGCTCGCCAGAGAACCCGCCGCCGATCCACCACACCCACCGCATTCGCAACCCCTCCCGCCTCCCGCTCCCGCTTCGCCGCCTCCGAAACAACCCCAACCCCATCATTTCGCACGCGCCGCCCCAACGGCACCGCACGCACCCCCTCCTCTACCGATGATGGCCCCCCCTCTTCGGAAGGCGGCGACAGCTACGGCATGGACGAGGACCGCCCCACCTTCGTCTGGGGCACCAATATCAGCGTCAATGATGTTAAGCTCGCCATTATTAGGTTTTTGAAGAATTTTCGGGACCAATCGCAGAACTCCGAGAGCGATTATCTTACCGAAGGGAAATACATTGAGGCCATCAAGAGAATTCTGGAAATGGAAGGCGATTCCCTGGATGTGGATGCCCGCAATGTGTTTGATTATGATTCCGATTTGTATGCTAAGATGGTCAGGTACCCACTTGAGGTTCTTGCTATTTTCGACATTGTTTTGATGGAATTGTTGCCTGTCATAAACCCCTTGTTCGAGAAGCACATTCAGACTCGCATTTTCAATCTCAAAACATCAACATCCATGAGAAATCTGAACCCGTCTGATATTGAGAGGATGGTTTCAATAAAGGGGATGATTATTCGGTCCAGTTCAATAATACCTGAGATAAGGGAAGCAATATTTAGATGCCTCGTGTGTGGTTACTACTCTGACCCTCTTCCTGTAGAAAAAGGGAAAATAAATGAACCTACAAGATGCATGAAGGAAGAGTGTCAAGCCAAGAATTCTATGACACTTGTTCACAACCGTTGCAGTGGGTTTACTGATAAACAGATTGTGAGGCTCCAGGAGACGCCTGATGAGATCCCTGAAGGAGGGACACCGCATACTGTGAGTTTGTTGATGCATGACAAACTGGTTGATGCGGGAAAACCAGGTGACAGAGTTGAGGTTACTGGGATATATCGGGCTATGAGCGTAAGAGTTGGACCTACACAGAGAACTGTAAAATCATTATTCAAGGCATGCTTCTATCTTTTCCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0000785 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

379

Amino Acids

42.26

Weight (kDa)

6.56

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_N	PF14551	125 - 218	3.5e-12	MCM N-terminal domain
MCM_OB	PF17207	225 - 355	5.1e-39	MCM OB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16440
fragaria_vesca	FvH4_2g09990
malus_domestica	MD00G1085600.v1.1 MD10G1066500.v1.1
prunus_persica	Prupe.8G088400_v2.0.a1
pyrus_communis	pycom05g04970 pycom05g04980 pycom10g05200
rosa_chinensis	RchiOBHm_Chr6g0266881 RchiOBHm_Chr6g0266891
rosa_laevigata	RLG00000014063 RLG00000014064 RLG00000014065
rosa_multiflora	Rmu_co8507775.1_g000001 Rmu_sc0021142.1_g000001 Rmu_sc0036177.1_g000001
rosa_roxburghii	Rroxscaffold_7G00201330
rosa_rugosa	Rorug06G0027900
rosa_samantha	Rh6AG149000 Rh6BG150000 Rh6CG144900 Rh6DG134200
rosa_wichuraiana	Rw6G012890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	552
AccB1I	GGYRCC	3 cut(s)	239, 338, 552
AccBSI	CCGCTC	2 cut(s)	113, 177
AccII	CGCG	1 cut(s)	226
AclWI	GGATC	2 cut(s)	129, 949
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	3 cut(s)	391, 465, 874
AcuI	CTGAAG	1 cut(s)	981
AcyI	GRCGYC	2 cut(s)	102, 944
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	6 cut(s)	283, 333, 378, 496, 562, 965
AgsI	TTSAA	6 cut(s)	31, 388, 652, 714, 744, 1111
AjnI	CCWGG	3 cut(s)	489, 936, 1024
AluBI	AGCT	2 cut(s)	300, 367
AluI	AGCT	2 cut(s)	300, 367
Alw26I	GTCTC	1 cut(s)	935
AlwI	GGATC	2 cut(s)	129, 949
AoxI	GGCC	4 cut(s)	38, 96, 271, 453
ApoI	RAATTY	3 cut(s)	391, 465, 874
Asp718I	GGTACC	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	6 cut(s)	38, 272, 316, 400, 735, 1079
AsuHPI	GGTGA	1 cut(s)	1040
AvaII	GGWCC	4 cut(s)	316, 400, 735, 1079
BaeGI	GKGCMC	1 cut(s)	341
BanI	GGYRCC	3 cut(s)	239, 338, 552
BauI	CACGAG	1 cut(s)	782
BccI	CCATC	6 cut(s)	220, 263, 464, 538, 586, 700
BceAI	ACGGC	2 cut(s)	253, 319
BcgI	CGANNNNNNTGC	3 cut(s)	33, 518, 552
BciT130I	CCWGG	3 cut(s)	491, 938, 1026
BcoDI	GTCTC	1 cut(s)	935
BfmI	CTRYAG	1 cut(s)	813
BglI	GCCNNNNNGGC	2 cut(s)	75, 237
BisI	GCNGC	7 cut(s)	105, 108, 111, 130, 189, 229, 292
BlsI	GCNGC	7 cut(s)	106, 109, 112, 131, 190, 230, 293
Bme1390I	CCNGG	3 cut(s)	491, 938, 1026
Bme18I	GGWCC	4 cut(s)	316, 400, 735, 1079
BmgT120I	GGNCC	6 cut(s)	38, 272, 316, 400, 735, 1079
BmiI	GGNNCC	6 cut(s)	241, 274, 340, 401, 554, 935
BmrFI	CCNGG	3 cut(s)	491, 938, 1026
BmrI	ACTGGG	1 cut(s)	1056
BmsI	GCATC	5 cut(s)	490, 767, 836, 984, 1003
BmuI	ACTGGG	1 cut(s)	1056
BpmI	CTGGAG	2 cut(s)	49, 920
BpuEI	CTTGAG	1 cut(s)	581
BsaHI	GRCGYC	2 cut(s)	102, 944
BsaJI	CCNNGG	1 cut(s)	489
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	6 cut(s)	283, 333, 378, 496, 562, 965
Bse1I	ACTGG	3 cut(s)	738, 1011, 1051
Bse3DI	GCAATG	1 cut(s)	514
BseBI	CCWGG	3 cut(s)	491, 938, 1026
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	5 cut(s)	499, 505, 668, 711, 729
BseLI	CCNNNNNNNGG	6 cut(s)	283, 333, 378, 496, 562, 965
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	3 cut(s)	738, 1011, 1051
BseRI	GAGGAG	1 cut(s)	247
BseSI	GKGCMC	1 cut(s)	341
BseX3I	CGGCCG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	226
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	40, 98, 273, 455
BshNI	GGYRCC	3 cut(s)	239, 338, 552
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	2 cut(s)	413, 982
BslI	CCNNNNNNNGG	6 cut(s)	283, 333, 378, 496, 562, 965
BsmAI	GTCTC	1 cut(s)	935
BsmBI	CGTCTC	1 cut(s)	935
BsmFI	GGGAC	2 cut(s)	413, 982
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	4 cut(s)	40, 98, 273, 455
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	134, 954
BspANI	GGCC	4 cut(s)	40, 98, 273, 455
BspCNI	CTCAG	1 cut(s)	745
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	6 cut(s)	241, 274, 340, 401, 554, 935
BspPI	GGATC	2 cut(s)	129, 949
BspT107I	GGYRCC	3 cut(s)	239, 338, 552
BsrBI	CCGCTC	2 cut(s)	113, 177
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	3 cut(s)	738, 1011, 1051
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	2 cut(s)	134, 954
BssNI	GRCGYC	2 cut(s)	102, 944
BssSI	CACGAG	1 cut(s)	782
Bst2BI	CACGAG	1 cut(s)	782
Bst2UI	CCWGG	3 cut(s)	491, 938, 1026
Bst4CI	ACNGT	3 cut(s)	899, 982, 1096
Bst6I	CTCTTC	5 cut(s)	19, 94, 286, 813, 852
BstACI	GRCGYC	2 cut(s)	102, 944
BstC8I	GCNNGC	6 cut(s)	115, 224, 247, 369, 505, 1117
BstDEI	CTNAG	2 cut(s)	540, 753
BstENI	CCTNNNNNAGG	1 cut(s)	963
BstF5I	GGATG	5 cut(s)	499, 505, 668, 711, 729
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	2 cut(s)	137, 957
BstMAI	GTCTC	1 cut(s)	935
BstMBI	GATC	2 cut(s)	134, 954
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	7 cut(s)	75, 104, 110, 228, 237, 246, 297
BstNI	CCWGG	3 cut(s)	491, 938, 1026
BstNSI	RCATGY	1 cut(s)	1119
BstSCI	CCNGG	3 cut(s)	489, 936, 1024
BstSFI	CTRYAG	1 cut(s)	813
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	954
BstYI	RGATCY	1 cut(s)	954
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	4 cut(s)	40, 98, 273, 455
BtsCI	GGATG	5 cut(s)	499, 505, 668, 711, 729
BtsI	GCAGTG	1 cut(s)	910
BtsIMutI	CAGTG	1 cut(s)	910
Cac8I	GCNNGC	6 cut(s)	115, 224, 247, 369, 505, 1117
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	6 cut(s)	38, 272, 316, 400, 735, 1079
CseI	GACGC	3 cut(s)	110, 340, 952
CsiI	ACCWGGT	1 cut(s)	1024
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	5 cut(s)	307, 673, 850, 998, 1116
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	2 cut(s)	540, 753
DpnI	GATC	2 cut(s)	136, 956
DpnII	GATC	2 cut(s)	134, 954
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	5 cut(s)	19, 94, 286, 813, 852
EarI	CTCTTC	5 cut(s)	19, 94, 286, 813, 852
EclXI	CGGCCG	1 cut(s)	96
Eco47I	GGWCC	4 cut(s)	316, 400, 735, 1079
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	981
EcoNI	CCTNNNNNAGG	1 cut(s)	963
EcoRI	GAATTC	2 cut(s)	465, 874
EcoRII	CCWGG	3 cut(s)	489, 936, 1024
EcoT22I	ATGCAT	2 cut(s)	851, 999
Esp3I	CGTCTC	1 cut(s)	935
FaeI	CATG	5 cut(s)	310, 676, 853, 1001, 1119
FalI	AAGNNNNNCTT	2 cut(s)	1103, 1135
FaqI	GGGAC	2 cut(s)	413, 982
FatI	CATG	5 cut(s)	306, 672, 849, 997, 1115
FauI	CCCGC	6 cut(s)	134, 175, 182, 188, 512, 1009
Fnu4HI	GCNGC	7 cut(s)	105, 108, 111, 130, 189, 229, 292
FokI	GGATG	5 cut(s)	506, 512, 655, 718, 736
Fsp4HI	GCNGC	7 cut(s)	105, 108, 111, 130, 189, 229, 292
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	7 cut(s)	105, 108, 111, 130, 189, 229, 292
GsuI	CTGGAG	2 cut(s)	49, 920
HaeIII	GGCC	4 cut(s)	40, 98, 273, 455
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	3 cut(s)	110, 340, 952
HhaI	GCGC	1 cut(s)	228
Hin1I	GRCGYC	2 cut(s)	102, 944
Hin1II	CATG	5 cut(s)	310, 676, 853, 1001, 1119
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	5 cut(s)	11, 56, 485, 524, 640
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	1040
Hpy166II	GTNNAC	2 cut(s)	892, 912
Hpy188I	TCNGA	9 cut(s)	10, 196, 286, 418, 529, 639, 684, 694, 802
Hpy188III	TCNNGA	5 cut(s)	50, 398, 460, 470, 625
Hpy8I	GTNNAC	2 cut(s)	892, 912
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	9 cut(s)	51, 70, 94, 281, 337, 431, 473, 847, 956
HpyCH4III	ACNGT	3 cut(s)	899, 982, 1096
HpyCH4V	TGCA	4 cut(s)	20, 849, 903, 997
HpyF10VI	GCNNNNNNNGC	7 cut(s)	75, 104, 110, 228, 237, 246, 297
HpyF3I	CTNAG	2 cut(s)	540, 753
Hsp92I	GRCGYC	2 cut(s)	102, 944
Hsp92II	CATG	5 cut(s)	310, 676, 853, 1001, 1119
HspAI	GCGC	1 cut(s)	226
KpnI	GGTACC	1 cut(s)	556
Kzo9I	GATC	2 cut(s)	134, 954
LmnI	GCTCC	2 cut(s)	182, 939
LweI	GCATC	5 cut(s)	490, 767, 836, 984, 1003
MabI	ACCWGGT	1 cut(s)	1024
MaeIII	GTNAC	3 cut(s)	791, 1028, 1042
MalI	GATC	2 cut(s)	136, 956
MbiI	CCGCTC	2 cut(s)	113, 177
MboI	GATC	2 cut(s)	134, 954
MboII	GAAGA	6 cut(s)	6, 81, 273, 400, 800, 869
MflI	RGATCY	1 cut(s)	954
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	5 cut(s)	25, 391, 465, 596, 874
MlyI	GAGTC	3 cut(s)	5, 50, 634
MmeI	TCCRAC	2 cut(s)	33, 1057
Mph1103I	ATGCAT	2 cut(s)	851, 999
MseI	TTAA	1 cut(s)	363
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	3 cut(s)	491, 938, 1026
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	3 cut(s)	491, 938, 1026
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	7 cut(s)	75, 104, 110, 228, 237, 246, 297
NdeII	GATC	2 cut(s)	134, 954
NlaIII	CATG	5 cut(s)	310, 676, 853, 1001, 1119
NlaIV	GGNNCC	6 cut(s)	241, 274, 340, 401, 554, 935
NmuCI	GTSAC	1 cut(s)	1028
NsiI	ATGCAT	2 cut(s)	851, 999
NspI	RCATGY	1 cut(s)	1119
PaeI	GCATGC	1 cut(s)	1119
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 309
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	485, 524
PfoI	TCCNGGA	1 cut(s)	936
PkrI	GCNGC	7 cut(s)	106, 109, 112, 131, 190, 230, 293
PleI	GAGTC	3 cut(s)	5, 50, 634
PpsI	GAGTC	3 cut(s)	5, 50, 634
Psp6I	CCWGG	3 cut(s)	489, 936, 1024
PspGI	CCWGG	3 cut(s)	489, 936, 1024
PspN4I	GGNNCC	6 cut(s)	241, 274, 340, 401, 554, 935
PspPI	GGNCC	6 cut(s)	38, 272, 316, 400, 735, 1079
PsuI	RGATCY	1 cut(s)	954
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	7 cut(s)	105, 108, 111, 130, 189, 229, 292
Sau3AI	GATC	2 cut(s)	134, 954
Sau96I	GGNCC	6 cut(s)	38, 272, 316, 400, 735, 1079
SchI	GAGTC	3 cut(s)	5, 50, 634
ScrFI	CCNGG	3 cut(s)	491, 938, 1026
SduI	GDGCHC	1 cut(s)	341
SexAI	ACCWGGT	1 cut(s)	1024
SfaNI	GCATC	5 cut(s)	490, 767, 836, 984, 1003
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	4 cut(s)	316, 400, 735, 1079
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SphI	GCATGC	1 cut(s)	1119
Sse9I	AATT	5 cut(s)	25, 391, 465, 596, 874
SspI	AATATT	1 cut(s)	771
StyD4I	CCNGG	3 cut(s)	489, 936, 1024
TaaI	ACNGT	3 cut(s)	899, 982, 1096
TaqI	TCGA	2 cut(s)	579, 624
TaqII	GACCGA	1 cut(s)	723
TasI	AATT	5 cut(s)	25, 391, 465, 596, 874
TauI	GCSGC	7 cut(s)	107, 110, 113, 132, 191, 231, 294
TfiI	GAWTC	2 cut(s)	485, 524
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	910
TseFI	GTSAC	1 cut(s)	1028
Tsp45I	GTSAC	1 cut(s)	1028
TspDTI	ATGAA	2 cut(s)	849, 866
TspRI	CASTG	1 cut(s)	910
VpaK11BI	GGWCC	4 cut(s)	316, 400, 735, 1079
XagI	CCTNNNNNAGG	1 cut(s)	963
XapI	RAATTY	3 cut(s)	391, 465, 874
XceI	RCATGY	1 cut(s)	1119
Zsp2I	ATGCAT	2 cut(s)	851, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.