Rorug06G0027900

Belongs to the MCM family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
3343239 .. 3343737
499 bp
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UTR
Exon/CDS
Intron
Rorug06G0027900.1

Sequence Viewer

Length: 312 bp
ATGATTGTTGTGATATCTTCTCTAGTGTTTCGGACTTCCTTGTTTTTGTTCTTGTTCTCATGGATAACAAAAGGCCATGATCTTAATCTCTTTCGTCAAACAGAACATCTTGGTCGACCCATGGCATTTTTGAAAGCATGGAGTGAAGCATGTAAATGGGATGGAAGAGCAAAGGTTGAGATTCCGGCAGGAACATTCAGGTTGTTCCCAGTTGTATTCTTAGGTCCATGCAAGGGTCGCATGGCCCTTGTAATCAAGGGAACTTTGCTGGCTTCTACTAGTCCATCAGCATTGAGTCTGAAAATTGGATAA

Protein Analysis

103

Amino Acids

11.44

Weight (kDa)

10.38

Isoelectric Point (pI)

29.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 1 cut(s) 133
AhlI ACTAGT 1 cut(s) 278
AoxI GGCC 2 cut(s) 73, 243
AspS9I GGNCC 2 cut(s) 224, 244
AvaII GGWCC 1 cut(s) 224
BccI CCATC 2 cut(s) 155, 292
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 2 cut(s) 23, 279
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 224, 244
BmrI ACTGGG 1 cut(s) 203
BmuI ACTGGG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 209
Bse8I GATNNNNATC 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 166
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 209
BshFI GGCC 2 cut(s) 75, 245
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 233
BsnI GGCC 2 cut(s) 75, 245
Bsp143I GATC 1 cut(s) 79
Bsp19I CCATGG 1 cut(s) 120
BspANI GGCC 2 cut(s) 75, 245
BspQI GCTCTTC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 220
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 153
BsuRI GGCC 2 cut(s) 75, 245
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 224, 244
CviAII CATG 7 cut(s) 60, 77, 121, 138, 150, 228, 241
CviJI RGCY 3 cut(s) 75, 245, 272
CviKI_1 RGCY 3 cut(s) 75, 245, 272
DdeI CTNAG 1 cut(s) 220
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 120
Eco32I GATATC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 224
EcoRV GATATC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 7 cut(s) 63, 80, 124, 141, 153, 231, 244
FaiI YATR 7 cut(s) 61, 78, 122, 139, 151, 229, 242
FatI CATG 7 cut(s) 59, 76, 120, 137, 149, 227, 240
FblI GTMKAC 1 cut(s) 115
FokI GGATG 1 cut(s) 173
FspBI CTAG 2 cut(s) 23, 279
HaeIII GGCC 2 cut(s) 75, 245
HapII CCGG 1 cut(s) 185
Hin1II CATG 7 cut(s) 63, 80, 124, 141, 153, 231, 244
HincII GTYRAC 1 cut(s) 116
HindII GTYRAC 1 cut(s) 116
HinfI GANTC 2 cut(s) 181, 295
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 2 cut(s) 33, 300
Hpy8I GTNNAC 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 220
Hsp92II CATG 7 cut(s) 63, 80, 124, 141, 153, 231, 244
Kzo9I GATC 1 cut(s) 79
LguI GCTCTTC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 174, 184, 198, 222, 254
MaeI CTAG 2 cut(s) 23, 279
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 2 cut(s) 9, 177
MluCI AATT 1 cut(s) 303
MlyI GAGTC 1 cut(s) 304
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 154
MspI CCGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 237
NcoI CCATGG 1 cut(s) 120
NdeII GATC 1 cut(s) 79
NlaIII CATG 7 cut(s) 63, 80, 124, 141, 153, 231, 244
NspI RCATGY 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 181
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PspPI GGNCC 2 cut(s) 224, 244
RseI CAYNNNNRTG 1 cut(s) 154
SalI GTCGAC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 224, 244
SchI GAGTC 1 cut(s) 304
SetI ASST 3 cut(s) 177, 203, 226
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 154
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 1 cut(s) 303
SspMI CTAG 2 cut(s) 23, 279
StyI CCWWGG 1 cut(s) 120
TaqI TCGA 1 cut(s) 115
TasI AATT 1 cut(s) 303
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 224
XceI RCATGY 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 115
XspI CTAG 2 cut(s) 23, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.