pycom05g04980

Belongs to the MCM family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
5888160 .. 5891496
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g04980.3

Sequence Viewer

Length: 1449 bp
ATGACTGTTAGAGTTGGACCAACACAGAGAACTGTAAAATCATTGTTCAAGACTTACATTGATTGTCTGCATATAAAGAAATCTGATAAGTCAAGAATGCTGGCGGAGGATCAAGTGGAAGTTGACACTTCCTTGGTTGGAAACTCAGAAGAGATTCTTTTTGATGAAAAAAAGGTGGAACAATTGAAAGAGTTGGCAAAACAGCCAGATATATATGATCGATTAACAAGGTCTTTAGCACCAAACATCTGGGAATTAGATGACGTTAAAAAAGGACTTCTTTGCCAGCTTTTTGGTGGTAACGCTTTGAAGCTACCATCTGGTGCTCGCTTCCGTGGTGATATTAATATTCTTCTTGTTGGTGATCCTGGAACCAGCAAGTCCCAGCTGCTCCAGTACATACATAAACTAGCTCCTCGCGGAATATACACTAGTGGAAGAGGGAGTTCCGCTGTTGGATTGACTGCTTATGTTGCGAAAGATCCTGAAACAGGGGAAACCGTTTTAGAGAGTGGGGCCTTAGTTTTGAGCGATAGAGGCATTTGTTGCATTGATGAATTTGACAAAATGTCTGATAGTGCAAGGAGCATGCTACATGAGGTGATGGAACAGCAAACTGTTTCAATAGCTAAGGCAGGAATTATTGCTTCCCTTAATGCTAGGACTTCAGTCTTGGCTTGTGCAAATCCAAGTGGTTCACGCTATAACCCTCGCTTATCAGTAATTGACAACATACACCTTCCTCCTACCTTATTATCCAGGTTCGATCTGATCTACTTACTCCTTGACAAGGCTGATGAGCATACAGACAGACGCCTTGCAAAGCATATTGTTGCATTACACTTTGAGAATCCTGAGAGTGTACAGCAGGATGTCTTAGACATTGCTACGTTGACCGCATATGTGGGCTATGCCCGAAAGCATATTCACCCACAATTGTCTGATGAGGCTGCTGAAGAGTTGACTAGAGGTTATGTTGAGTTGAGGAGGAGAGGAAATTTTCCAGGCAGTAGCAAAAAGGTGATAACAGCAACACCCAGGCAGATTGAGAGTTTGATACGACTTAGTGAAGCTTTAGCTCGCATCCGTTTCTCAGAATCGGTTGAGAAGCATGATGTTATTGAGGCATTTCGGCTTCTGGAAGTTGCAATGCAGCAATCGGCAACTGACCACTCCACAGGAACGATCGACATCGATCTTATCACCACTGGAATTTCAGCAAGTGAAAGAATGAGACGAGAAAGTCTGGTATCATCAGCTCGTAACATAATTATGGAAAAGATACAACTTGGGGGACCCTCAATGCGCTTGTTAGAGCTGCTGGAGGAGCTGAAGCAGCAGAGTTCTGGCAGTGAACTCCACCTCAACGATCTGAGGACTGCAATTACGACACTAGCAAGTGAGGGATTTGTGGCTTTTGTTCACGGTGACAGTGTCAAAAGAATATGA

Protein Analysis

483

Amino Acids

53.39

Weight (kDa)

6.26

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1242
AccII CGCG 1 cut(s) 420
AciI CCGC 4 cut(s) 104, 420, 450, 897
AclWI GGATC 3 cut(s) 117, 359, 476
AcsI RAATTY 3 cut(s) 557, 997, 1212
AcuI CTGAAG 3 cut(s) 651, 975, 1352
AcyI GRCGYC 1 cut(s) 814
AfaI GTAC 2 cut(s) 398, 864
AfiI CCNNNNNNNGG 2 cut(s) 491, 790
AgsI TTSAA 4 cut(s) 49, 187, 310, 624
AhdI GACNNNNNGTC 1 cut(s) 568
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 4 cut(s) 367, 758, 1003, 1037
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 1228
AlwI GGATC 3 cut(s) 117, 359, 476
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 5 cut(s) 388, 950, 1153, 1318, 1336
ApoI RAATTY 3 cut(s) 557, 997, 1212
AseI ATTAAT 1 cut(s) 345
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 1308
AspS9I GGNCC 3 cut(s) 17, 516, 1295
AsuHPI GGTGA 7 cut(s) 350, 374, 613, 920, 1033, 1195, 1439
AvaII GGWCC 2 cut(s) 17, 1295
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 5 cut(s) 375, 937, 1165, 1305, 1348
BccI CCATC 2 cut(s) 325, 598
BciT130I CCWGG 4 cut(s) 369, 760, 1005, 1039
BcoDI GTCTC 1 cut(s) 1228
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 5 cut(s) 410, 432, 660, 966, 1394
BisI GCNGC 5 cut(s) 389, 951, 1154, 1319, 1337
BlsI GCNGC 5 cut(s) 390, 952, 1155, 1320, 1338
Bme1390I CCNGG 4 cut(s) 369, 760, 1005, 1039
Bme18I GGWCC 2 cut(s) 17, 1295
BmeRI GACNNNNNGTC 1 cut(s) 568
BmgT120I GGNCC 3 cut(s) 17, 516, 1295
BmiI GGNNCC 4 cut(s) 373, 517, 1296, 1297
BmrFI CCNGG 4 cut(s) 369, 760, 1005, 1039
BmsI GCATC 1 cut(s) 1092
BoxI GACNNNNGTC 1 cut(s) 668
BpmI CTGGAG 2 cut(s) 377, 1343
Bpu10I CCTNAGC 1 cut(s) 630
Bsa29I ATCGAT 2 cut(s) 220, 1194
BsaBI GATNNNNATC 1 cut(s) 1190
BsaHI GRCGYC 1 cut(s) 814
BsaJI CCNNGG 3 cut(s) 132, 334, 1037
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 790
Bse1I ACTGG 2 cut(s) 394, 1213
Bse3DI GCAATG 2 cut(s) 882, 1155
Bse8I GATNNNNATC 1 cut(s) 1190
BseBI CCWGG 4 cut(s) 369, 760, 1005, 1039
BseCI ATCGAT 2 cut(s) 220, 1194
BseDI CCNNGG 3 cut(s) 132, 334, 1037
BseGI GGATG 2 cut(s) 877, 1083
BseJI GATNNNNATC 1 cut(s) 1190
BseLI CCNNNNNNNGG 2 cut(s) 491, 790
BseMI GCAATG 2 cut(s) 882, 1155
BseMII CTCAG 4 cut(s) 159, 846, 1107, 1364
BseNI ACTGG 2 cut(s) 394, 1213
BseRI GAGGAG 4 cut(s) 405, 1000, 1003, 1340
BseXI GCAGC 5 cut(s) 375, 937, 1165, 1305, 1348
BseYI CCCAGC 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 420
Bsh1285I CGRYCG 1 cut(s) 1188
BshFI GGCC 1 cut(s) 518
BshVI ATCGAT 2 cut(s) 220, 1194
BsiEI CGRYCG 1 cut(s) 1188
BsiHKAI GWGCWC 1 cut(s) 328
BslFI GGGAC 2 cut(s) 367, 1308
BslI CCNNNNNNNGG 2 cut(s) 491, 790
BsmAI GTCTC 1 cut(s) 1228
BsmBI CGTCTC 1 cut(s) 1228
BsmFI GGGAC 2 cut(s) 367, 1308
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 328
Bsp1407I TGTACA 1 cut(s) 862
Bsp143I GATC 9 cut(s) 109, 217, 364, 481, 766, 771, 1185, 1195, 1369
BspACI CCGC 4 cut(s) 104, 420, 450, 897
BspANI GGCC 1 cut(s) 518
BspCNI CTCAG 4 cut(s) 158, 847, 1106, 1365
BspDI ATCGAT 2 cut(s) 220, 1194
BspFNI CGCG 1 cut(s) 420
BspLI GGNNCC 4 cut(s) 373, 517, 1296, 1297
BspPI GGATC 3 cut(s) 117, 359, 476
BsrDI GCAATG 2 cut(s) 882, 1155
BsrGI TGTACA 1 cut(s) 862
BsrI ACTGG 2 cut(s) 394, 1213
BssECI CCNNGG 3 cut(s) 132, 334, 1037
BssMI GATC 9 cut(s) 109, 217, 364, 481, 766, 771, 1185, 1195, 1369
BssNI GRCGYC 1 cut(s) 814
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 4 cut(s) 369, 760, 1005, 1039
Bst4CI ACNGT 6 cut(s) 7, 34, 502, 619, 1427, 1433
Bst6I CTCTTC 3 cut(s) 144, 433, 951
BstACI GRCGYC 1 cut(s) 814
BstAPI GCANNNNNTGC 1 cut(s) 546
BstAUI TGTACA 1 cut(s) 862
BstC8I GCNNGC 5 cut(s) 102, 287, 328, 590, 1081
BstDEI CTNAG 8 cut(s) 145, 520, 630, 855, 877, 1064, 1093, 1373
BstDSI CCRYGG 1 cut(s) 334
BstENI CCTNNNNNAGG 2 cut(s) 489, 788
BstF5I GGATG 2 cut(s) 877, 1083
BstFNI CGCG 1 cut(s) 420
BstHHI GCGC 1 cut(s) 1308
BstKTI GATC 9 cut(s) 112, 220, 367, 484, 769, 774, 1188, 1198, 1372
BstMAI GTCTC 1 cut(s) 1228
BstMBI GATC 9 cut(s) 109, 217, 364, 481, 766, 771, 1185, 1195, 1369
BstMCI CGRYCG 1 cut(s) 1188
BstMWI GCNNNNNNNGC 5 cut(s) 473, 537, 546, 1327, 1336
BstNI CCWGG 4 cut(s) 369, 760, 1005, 1039
BstNSI RCATGY 1 cut(s) 592
BstPAI GACNNNNGTC 1 cut(s) 668
BstSCI CCNGG 4 cut(s) 367, 758, 1003, 1037
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 5 cut(s) 375, 937, 1165, 1305, 1348
BstX2I RGATCY 1 cut(s) 481
BstXI CCANNNNNNTGG 2 cut(s) 249, 293
BstYI RGATCY 1 cut(s) 481
Bsu15I ATCGAT 2 cut(s) 220, 1194
BsuRI GGCC 1 cut(s) 518
BsuTUI ATCGAT 2 cut(s) 220, 1194
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 2 cut(s) 877, 1083
BtsI GCAGTG 1 cut(s) 1357
BtsIMutI CAGTG 3 cut(s) 1206, 1357, 1438
Cac8I GCNNGC 5 cut(s) 102, 287, 328, 590, 1081
CfoI GCGC 1 cut(s) 1308
Cfr13I GGNCC 3 cut(s) 17, 516, 1295
ClaI ATCGAT 2 cut(s) 220, 1194
CseI GACGC 1 cut(s) 822
Csp6I GTAC 2 cut(s) 397, 863
CviAII CATG 3 cut(s) 589, 596, 1112
CviQI GTAC 2 cut(s) 397, 863
DdeI CTNAG 8 cut(s) 145, 520, 630, 855, 877, 1064, 1093, 1373
DpnI GATC 9 cut(s) 111, 219, 366, 483, 768, 773, 1187, 1197, 1371
DpnII GATC 9 cut(s) 109, 217, 364, 481, 766, 771, 1185, 1195, 1369
DrdI GACNNNNNNGTC 1 cut(s) 1242
DriI GACNNNNNGTC 1 cut(s) 568
DseDI GACNNNNNNGTC 1 cut(s) 1242
Eam1104I CTCTTC 3 cut(s) 144, 433, 951
Eam1105I GACNNNNNGTC 1 cut(s) 568
EarI CTCTTC 3 cut(s) 144, 433, 951
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 17, 1295
Eco57I CTGAAG 3 cut(s) 651, 975, 1352
EcoNI CCTNNNNNAGG 2 cut(s) 489, 788
EcoO109I RGGNCCY 2 cut(s) 516, 1295
EcoRII CCWGG 4 cut(s) 367, 758, 1003, 1037
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 1228
FaeI CATG 3 cut(s) 592, 599, 1115
FalI AAGNNNNNCTT 4 cut(s) 141, 173, 264, 296
FaqI GGGAC 2 cut(s) 367, 1308
FatI CATG 3 cut(s) 588, 595, 1111
FauNDI CATATG 1 cut(s) 901
Fnu4HI GCNGC 5 cut(s) 389, 951, 1154, 1319, 1337
FokI GGATG 2 cut(s) 884, 1070
Fsp4HI GCNGC 5 cut(s) 389, 951, 1154, 1319, 1337
FspBI CTAG 5 cut(s) 410, 432, 660, 966, 1394
GlaI GCGC 1 cut(s) 1307
GluI GCNGC 5 cut(s) 389, 951, 1154, 1319, 1337
GsaI CCCAGC 1 cut(s) 388
GsuI CTGGAG 2 cut(s) 377, 1343
HaeIII GGCC 1 cut(s) 518
HgaI GACGC 1 cut(s) 822
HhaI GCGC 1 cut(s) 1308
Hin1I GRCGYC 1 cut(s) 814
Hin1II CATG 3 cut(s) 592, 599, 1115
Hin6I GCGC 1 cut(s) 1306
HinP1I GCGC 1 cut(s) 1306
HincII GTYRAC 3 cut(s) 124, 894, 963
HindII GTYRAC 3 cut(s) 124, 894, 963
HindIII AAGCTT 1 cut(s) 1071
HinfI GANTC 3 cut(s) 154, 850, 1097
HphI GGTGA 7 cut(s) 350, 374, 613, 920, 1033, 1195, 1439
Hpy166II GTNNAC 7 cut(s) 124, 698, 863, 894, 963, 1355, 1423
Hpy188I TCNGA 7 cut(s) 85, 148, 574, 771, 943, 1096, 1374
Hpy188III TCNNGA 5 cut(s) 49, 93, 485, 854, 1139
Hpy8I GTNNAC 7 cut(s) 124, 698, 863, 894, 963, 1355, 1423
HpyAV CCTTC 1 cut(s) 749
HpyCH4III ACNGT 6 cut(s) 7, 34, 502, 619, 1427, 1433
HpyCH4IV ACGT 2 cut(s) 264, 890
HpyCH4V TGCA 9 cut(s) 70, 549, 581, 683, 821, 836, 1148, 1153, 1382
HpyF10VI GCNNNNNNNGC 5 cut(s) 473, 537, 546, 1327, 1336
HpyF3I CTNAG 8 cut(s) 145, 520, 630, 855, 877, 1064, 1093, 1373
HpySE526I ACGT 2 cut(s) 264, 890
Hsp92I GRCGYC 1 cut(s) 814
Hsp92II CATG 3 cut(s) 592, 599, 1115
HspAI GCGC 1 cut(s) 1306
KflI GGGWCCC 1 cut(s) 1295
Kzo9I GATC 9 cut(s) 109, 217, 364, 481, 766, 771, 1185, 1195, 1369
LmnI GCTCC 4 cut(s) 396, 418, 585, 1327
Lsp1109I GCAGC 5 cut(s) 375, 937, 1165, 1305, 1348
LweI GCATC 1 cut(s) 1092
MaeI CTAG 5 cut(s) 410, 432, 660, 966, 1394
MaeII ACGT 2 cut(s) 264, 890
MaeIII GTNAC 3 cut(s) 299, 1262, 1427
MalI GATC 9 cut(s) 111, 219, 366, 483, 768, 773, 1187, 1197, 1371
MboI GATC 9 cut(s) 109, 217, 364, 481, 766, 771, 1185, 1195, 1369
MboII GAAGA 4 cut(s) 161, 344, 450, 968
MfeI CAATTG 2 cut(s) 182, 935
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 1 cut(s) 328
MmeI TCCRAC 2 cut(s) 118, 436
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 4 cut(s) 224, 267, 345, 654
MslI CAYNNNNRTG 1 cut(s) 1271
MspA1I CMGCKG 2 cut(s) 388, 452
MspR9I CCNGG 4 cut(s) 369, 760, 1005, 1039
MunI CAATTG 2 cut(s) 182, 935
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 4 cut(s) 369, 760, 1005, 1039
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 5 cut(s) 473, 537, 546, 1327, 1336
NdeI CATATG 1 cut(s) 901
NdeII GATC 9 cut(s) 109, 217, 364, 481, 766, 771, 1185, 1195, 1369
NlaIII CATG 3 cut(s) 592, 599, 1115
NlaIV GGNNCC 4 cut(s) 373, 517, 1296, 1297
NmuCI GTSAC 1 cut(s) 1427
NspI RCATGY 1 cut(s) 592
PaeI GCATGC 1 cut(s) 592
PctI GAATGC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 3 cut(s) 154, 850, 1097
PflFI GACNNNGTC 1 cut(s) 1433
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 5 cut(s) 390, 952, 1155, 1320, 1338
Ple19I CGATCG 1 cut(s) 1188
PpuMI RGGWCCY 1 cut(s) 1295
PshAI GACNNNNGTC 1 cut(s) 668
PshBI ATTAAT 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 1295
Psp6I CCWGG 4 cut(s) 367, 758, 1003, 1037
PspFI CCCAGC 1 cut(s) 384
PspGI CCWGG 4 cut(s) 367, 758, 1003, 1037
PspN4I GGNNCC 4 cut(s) 373, 517, 1296, 1297
PspPI GGNCC 3 cut(s) 17, 516, 1295
PspPPI RGGWCCY 1 cut(s) 1295
PsuI RGATCY 1 cut(s) 481
PsyI GACNNNGTC 1 cut(s) 1433
PvuI CGATCG 1 cut(s) 1188
PvuII CAGCTG 1 cut(s) 388
RsaI GTAC 2 cut(s) 398, 864
RsaNI GTAC 2 cut(s) 397, 863
RseI CAYNNNNRTG 1 cut(s) 1271
SaqAI TTAA 4 cut(s) 224, 267, 345, 654
SatI GCNGC 5 cut(s) 389, 951, 1154, 1319, 1337
Sau3AI GATC 9 cut(s) 109, 217, 364, 481, 766, 771, 1185, 1195, 1369
Sau96I GGNCC 3 cut(s) 17, 516, 1295
ScrFI CCNGG 4 cut(s) 369, 760, 1005, 1039
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 1 cut(s) 1092
SinI GGWCC 2 cut(s) 17, 1295
SmiMI CAYNNNNRTG 1 cut(s) 1271
SpeI ACTAGT 1 cut(s) 431
SphI GCATGC 1 cut(s) 592
SsiI CCGC 4 cut(s) 104, 420, 450, 897
SspI AATATT 1 cut(s) 349
SspMI CTAG 5 cut(s) 410, 432, 660, 966, 1394
StyD4I CCNGG 4 cut(s) 367, 758, 1003, 1037
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 6 cut(s) 7, 34, 502, 619, 1427, 1433
TaiI ACGT 2 cut(s) 267, 893
TaqI TCGA 4 cut(s) 220, 765, 1188, 1194
TatI WGTACW 2 cut(s) 396, 862
TfiI GAWTC 3 cut(s) 154, 850, 1097
Tru1I TTAA 4 cut(s) 224, 267, 345, 654
Tru9I TTAA 4 cut(s) 224, 267, 345, 654
TscAI CASTG 3 cut(s) 1213, 1357, 1438
TseFI GTSAC 1 cut(s) 1427
TseI GCWGC 5 cut(s) 388, 950, 1153, 1318, 1336
Tsp45I GTSAC 1 cut(s) 1427
TspDTI ATGAA 2 cut(s) 180, 570
TspGWI ACGGA 2 cut(s) 323, 1076
TspRI CASTG 3 cut(s) 1213, 1357, 1438
Tth111I GACNNNGTC 1 cut(s) 1433
VpaK11BI GGWCC 2 cut(s) 17, 1295
VspI ATTAAT 1 cut(s) 345
XagI CCTNNNNNAGG 2 cut(s) 489, 788
XapI RAATTY 3 cut(s) 557, 997, 1212
XceI RCATGY 1 cut(s) 592
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 5 cut(s) 410, 432, 660, 966, 1394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.