Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008419

Physical Location & Seq

Genomic Coordinates Forward (+)

19177167 .. 19183591

Gene Structure 6425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG134200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2352 bp

ATGGCTTCCGACTCTTCTGCACCCAATTTCAACAACGGGCCTTCCTCTCCCGATGACTCCTTCTCCAGCCCAATCGGCAACACCTTCTCTTCTCCGGCCGACGCCGCCGCCGCTCGCCAGAGAAGCCGCCGCAGATCCACCACACCCACCGCATTCGCAACCCCTCCCGCCTCCCGCTCCCGCTTCGCCGCCTCCGAAACAACCCCAACCCCATCATCTCGCACGCGCCGCCCCAACGGCACCGCACGCACCCCCTCCTCTACCGATGATGGGCCCCCCTCTTCGGAAGGCGGCGACAGCTACGGCATGGACGAGGACCGCCCCACCTTCGTCTGGGGCACCAATATCAGCGTCAATGATGTTAAGCTCGCCATTATTAGGTTTTTGAAGAATTTTCGGGACCAATCGCAGAACTCCGAGAGCGATTATCTTACCGAAGGGAAATACATTGAGGCCATCAAGAGAATTCTGGAAATGGAAGGCGATTCCCTGGATGTGGATGCCCGCAATGTGTTTGATTATGATTCCGATTTGTATGCTAAGATGGTCAGGTACCCACTTGAGGTTCTTGCTATTTTCGACATTGTTTTGATGGAATTGTTGCCTGTCATAAACCCCTTGTTCGAGAAGCACATTCAGACCCGCATTTTCAATCTCAAAACATCAACATCCATGAGAAATCTGAACCCGTCTGATATTGAGAGGATGGTTTCAATAAAGGGGATGATTATTCGGTCCAGTTCAATAATACCTGAGATAAGGGAAGCAATATTTAGATGCCTCGTGTGTGGTTACTACTCTGACCCTCTTCCTGTAGAAAAAGGGAAAATAAATGAACCTACAAGATGCATGAAGGAAGAGTGTCAAGCCAAGAATTCTATGACACTTGTTCACAACCGTTGCAGGTTTACTGATAAACAGATTGTGAGGCTCCAGGAGACACCTGATGAGATCCCTGAAGGAGGGACACCGCATACTGTGAGTTTGTTGATGCATGACAAACTGGTTGATGCGGGAAAACCAGGTGACAGAGTTGAGGTTACTGGGATATATCGGGCTATGAGCGTAAGAGTTGGACCTACACAGAGAACTGTAAAATCATTATTCAAGACTTATATTGATTGTCTGCATATAAAAAAGTCTGACAAGTCAAGAATGCTGGCGGAGGAGCAGACGGAAGTTGAGAATTCCTTGGGTGGAAATTCAGATGAGATTCTTTTTGATGAAAAGAAGGTGGAACAATTGAAAGAGTTGGCAAAACAGCCTGATATATATGATCGCCTAACCAGATCTTTGGCACCAAACATCTGGGAGTTAGATGATGTCAAGAAAGGCCTTCTTTGCCAGCTTTTTGGTGGGAATGCTTTGAAGTTGCCATCTGGTGCAAGGTTCCGTGGGGATATTAATATTCTTCTTGTTGGTGATCCTGGAACCAGCAAGTCCCAGCTGCTCCAGTACATACACAAGCTTGCTCCCCGTGGCATATACACTAGTGGAAGAGGGAGTTCTGCTGTTGGTTTGACTGCTTATGTTGCAAAAGATCCTGAAACAGGGGAAACTGTTTTAGAGAGTGGAGCCTTAGTTTTGAGTGATCGAGGCATTTGTTGCATTGATGAATTTGACAAAATGTCTGACAGTGCAAGGAGCATGTTACACGAGGTGATGGAGCAGCAAACTGTGTCAATAGCAAAGGCGGGAATCATTGCTTCCCTTAATGCTAGGACATCAGTCCTGGCTTGTGCAAATCCAAGTGGATCTCGCTATAATCCTCGCTTGTCAGTAATTGACAACATACACCTTCCTCCTACCTTATTATCCAGGTTTGATCTGATCTACTTAATCCTTGACAAGGCTGATGAGCAGACAGACAGGCGCCTTGCAAAGCATATTGTTGCCTTGCACTTTGAGAATCCTGAGACTGTACAGCAGGATGTTTTAGACCTTGCCACGTTGACTGCTTATGTGGGATATGCCCGAAAGCATATTCACCCACAATTATCTGATGAAGCTGCAGAGGAGTTGACTCGTGGCTATGTAGAGTTGAGGAGGAGAGGAAATTTTCCGGGCAGCAGCAAAAAGGTGATAACAGCAACTCCTAGGCAAATCGAGAGTTTGATACGTCTTAGTGAAGCTCTAGCTCGGATTCGTTTTTCAGAATCGGTTGAAAAGCATGATGTAATGGAGGCATTTCGGCTTCTTGAAGTTGCAATGCAACAATCAGCAACAGATCACTCCACTGGTATAAATTTACTGCAGTTGTGCATACTTTTTCTAATTCTATTTCCCATGAAGACAAAACATTTTAATGTCATGACTTTTTACTCAAGGAACGATCGACATGGATCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0000785 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

783

Amino Acids

87.33

Weight (kDa)

6.51

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_N	PF14551	125 - 217	1.1e-11	MCM N-terminal domain
MCM_OB	PF17207	225 - 354	2.2e-40	MCM OB domain
MCM	PF00493	412 - 634	3.4e-101	MCM P-loop domain
AAA_5	PF07728	469 - 585	7.1e-07	AAA domain (dynein-related subfamily)
MCM_lid	PF17855	650 - 736	9.8e-27	MCM AAA-lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16440
fragaria_vesca	FvH4_2g09990
malus_domestica	MD00G1085600.v1.1 MD10G1066500.v1.1
prunus_persica	Prupe.8G088400_v2.0.a1
pyrus_communis	pycom05g04970 pycom05g04980 pycom10g05200
rosa_chinensis	RchiOBHm_Chr6g0266881 RchiOBHm_Chr6g0266891
rosa_laevigata	RLG00000014063 RLG00000014064 RLG00000014065
rosa_multiflora	Rmu_co8507775.1_g000001 Rmu_sc0021142.1_g000001 Rmu_sc0036177.1_g000001
rosa_roxburghii	Rroxscaffold_7G00201330
rosa_rugosa	Rorug06G0027900
rosa_samantha	Rh6AG149000 Rh6BG150000 Rh6CG144900 Rh6DG134200
rosa_wichuraiana	Rw6G012890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	894
Acc65I	GGTACC	1 cut(s)	552
AccB1I	GGYRCC	5 cut(s)	239, 338, 552, 1297, 1872
AccBSI	CCGCTC	2 cut(s)	113, 177
AccII	CGCG	1 cut(s)	226
AclWI	GGATC	6 cut(s)	129, 946, 1418, 1535, 1762, 2350
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	8 cut(s)	391, 465, 874, 1186, 1201, 1616, 2056, 2245
AcuI	CTGAAG	1 cut(s)	978
AcyI	GRCGYC	2 cut(s)	102, 1873
AdeI	CACNNNGTG	1 cut(s)	1660
AfaI	GTAC	3 cut(s)	554, 1457, 1923
AfiI	CCNNNNNNNGG	9 cut(s)	270, 283, 333, 378, 496, 562, 962, 1550, 1849
AhdI	GACNNNNNGTC	1 cut(s)	1627
AhlI	ACTAGT	1 cut(s)	1490
AjnI	CCWGG	6 cut(s)	489, 933, 1021, 1426, 1731, 1817
AluBI	AGCT	8 cut(s)	300, 367, 1348, 1447, 1468, 2009, 2132, 2138
AluI	AGCT	8 cut(s)	300, 367, 1348, 1447, 1468, 2009, 2132, 2138
Alw26I	GTCTC	2 cut(s)	932, 1910
AlwI	GGATC	6 cut(s)	129, 946, 1418, 1535, 1762, 2350
AoxI	GGCC	5 cut(s)	38, 96, 272, 453, 1333
ApaI	GGGCCC	1 cut(s)	276
ApeKI	GCWGC	5 cut(s)	1447, 1669, 2009, 2067, 2070
ApoI	RAATTY	8 cut(s)	391, 465, 874, 1186, 1201, 1616, 2056, 2245
AseI	ATTAAT	1 cut(s)	1404
Asp718I	GGTACC	1 cut(s)	552
AspA2I	CCTAGG	1 cut(s)	2096
AspLEI	GCGC	2 cut(s)	228, 1875
AspS9I	GGNCC	7 cut(s)	38, 272, 273, 316, 400, 735, 1076
AsuC2I	CCSGG	1 cut(s)	2064
AsuHPI	GGTGA	5 cut(s)	1037, 1433, 1672, 1979, 2092
AvaII	GGWCC	4 cut(s)	316, 400, 735, 1076
AvrII	CCTAGG	1 cut(s)	2096
BaeGI	GKGCMC	2 cut(s)	276, 341
BanI	GGYRCC	5 cut(s)	239, 338, 552, 1297, 1872
BanII	GRGCYC	1 cut(s)	276
BauI	CACGAG	3 cut(s)	782, 1655, 2025
BbsI	GAAGAC	1 cut(s)	2297
BbvI	GCAGC	5 cut(s)	1434, 1681, 1996, 2079, 2082
BccI	CCATC	8 cut(s)	220, 263, 464, 538, 586, 700, 1384, 1657
BceAI	ACGGC	2 cut(s)	253, 319
BcgI	CGANNNNNNTGC	3 cut(s)	33, 518, 552
BciT130I	CCWGG	6 cut(s)	491, 935, 1023, 1428, 1733, 1819
BcnI	CCSGG	1 cut(s)	2064
BcoDI	GTCTC	2 cut(s)	932, 1910
BcuI	ACTAGT	1 cut(s)	1490
BfaI	CTAG	4 cut(s)	1491, 1719, 2097, 2135
BfmI	CTRYAG	3 cut(s)	813, 2010, 2252
BfoI	RGCGCY	1 cut(s)	1876
BfuAI	ACCTGC	1 cut(s)	894
BglI	GCCNNNNNGGC	2 cut(s)	75, 237
BglII	AGATCT	1 cut(s)	1289
BlnI	CCTAGG	1 cut(s)	2096
Bme1390I	CCNGG	7 cut(s)	491, 935, 1023, 1428, 1733, 1819, 2064
Bme18I	GGWCC	4 cut(s)	316, 400, 735, 1076
BmeRI	GACNNNNNGTC	1 cut(s)	1627
BmgT120I	GGNCC	7 cut(s)	38, 272, 273, 316, 400, 735, 1076
BmrFI	CCNGG	7 cut(s)	491, 935, 1023, 1428, 1733, 1819, 2064
BmrI	ACTGGG	1 cut(s)	1053
BmsI	GCATC	5 cut(s)	490, 767, 836, 981, 1000
BmuI	ACTGGG	1 cut(s)	1053
BoxI	GACNNNNGTC	1 cut(s)	1727
BpiI	GAAGAC	1 cut(s)	2297
BpmI	CTGGAG	3 cut(s)	49, 917, 1436
BpuEI	CTTGAG	2 cut(s)	581, 2308
BpuMI	CCSGG	1 cut(s)	2064
BsaHI	GRCGYC	2 cut(s)	102, 1873
BsaJI	CCNNGG	5 cut(s)	489, 1191, 1393, 1477, 2096
BsaXI	ACNNNNNCTCC	6 cut(s)	47, 77, 1566, 1596, 2077, 2107
Bsc4I	CCNNNNNNNGG	9 cut(s)	270, 283, 333, 378, 496, 562, 962, 1550, 1849
Bse1I	ACTGG	5 cut(s)	738, 1008, 1048, 1453, 2242
Bse3DI	GCAATG	3 cut(s)	514, 1701, 2214
BseBI	CCWGG	6 cut(s)	491, 935, 1023, 1428, 1733, 1819
BseDI	CCNNGG	5 cut(s)	489, 1191, 1393, 1477, 2096
BseGI	GGATG	6 cut(s)	499, 505, 668, 711, 729, 1936
BseLI	CCNNNNNNNGG	9 cut(s)	270, 283, 333, 378, 496, 562, 962, 1550, 1849
BseMI	GCAATG	3 cut(s)	514, 1701, 2214
BseMII	CTCAG	2 cut(s)	744, 1905
BseNI	ACTGG	5 cut(s)	738, 1008, 1048, 1453, 2242
BseRI	GAGGAG	5 cut(s)	247, 1181, 2030, 2059, 2062
BseSI	GKGCMC	2 cut(s)	276, 341
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	5 cut(s)	1434, 1681, 1996, 2079, 2082
BseYI	CCCAGC	1 cut(s)	1443
Bsh1236I	CGCG	1 cut(s)	226
Bsh1285I	CGRYCG	2 cut(s)	99, 2335
BshFI	GGCC	5 cut(s)	40, 98, 274, 455, 1335
BshNI	GGYRCC	5 cut(s)	239, 338, 552, 1297, 1872
BsiEI	CGRYCG	2 cut(s)	99, 2335
BsiSI	CCGG	2 cut(s)	95, 2063
BslFI	GGGAC	3 cut(s)	413, 979, 1426
BslI	CCNNNNNNNGG	9 cut(s)	270, 283, 333, 378, 496, 562, 962, 1550, 1849
BsmAI	GTCTC	2 cut(s)	932, 1910
BsmFI	GGGAC	3 cut(s)	413, 979, 1426
BsmI	GAATGC	3 cut(s)	152, 1161, 1366
BsnI	GGCC	5 cut(s)	40, 98, 274, 455, 1335
Bsp120I	GGGCCC	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	276, 341
Bsp1407I	TGTACA	1 cut(s)	1921
BspANI	GGCC	5 cut(s)	40, 98, 274, 455, 1335
BspCNI	CTCAG	2 cut(s)	745, 1906
BspFNI	CGCG	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	2310
BspMAI	CTGCAG	2 cut(s)	2014, 2256
BspMI	ACCTGC	1 cut(s)	894
BspPI	GGATC	6 cut(s)	129, 946, 1418, 1535, 1762, 2350
BspT107I	GGYRCC	5 cut(s)	239, 338, 552, 1297, 1872
BsrBI	CCGCTC	2 cut(s)	113, 177
BsrDI	GCAATG	3 cut(s)	514, 1701, 2214
BsrGI	TGTACA	1 cut(s)	1921
BsrI	ACTGG	5 cut(s)	738, 1008, 1048, 1453, 2242
BssECI	CCNNGG	5 cut(s)	489, 1191, 1393, 1477, 2096
BssNI	GRCGYC	2 cut(s)	102, 1873
BssSI	CACGAG	3 cut(s)	782, 1655, 2025
BssT1I	CCWWGG	2 cut(s)	1191, 2096
Bst2BI	CACGAG	3 cut(s)	782, 1655, 2025
Bst2UI	CCWGG	6 cut(s)	491, 935, 1023, 1428, 1733, 1819
Bst4CI	ACNGT	7 cut(s)	899, 979, 1093, 1561, 1637, 1678, 1921
Bst6I	CTCTTC	6 cut(s)	19, 94, 286, 813, 852, 1492
BstACI	GRCGYC	2 cut(s)	102, 1873
BstAPI	GCANNNNNTGC	1 cut(s)	1605
BstAUI	TGTACA	1 cut(s)	1921
BstC8I	GCNNGC	8 cut(s)	115, 224, 247, 369, 505, 1161, 1346, 1470
BstDEI	CTNAG	5 cut(s)	540, 753, 1579, 1914, 2123
BstDSI	CCRYGG	2 cut(s)	1393, 1477
BstENI	CCTNNNNNAGG	3 cut(s)	960, 1548, 1847
BstF5I	GGATG	6 cut(s)	499, 505, 668, 711, 729, 1936
BstFNI	CGCG	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	1876
BstHHI	GCGC	2 cut(s)	228, 1875
BstMAI	GTCTC	2 cut(s)	932, 1910
BstMCI	CGRYCG	2 cut(s)	99, 2335
BstNI	CCWGG	6 cut(s)	491, 935, 1023, 1428, 1733, 1819
BstNSI	RCATGY	1 cut(s)	1651
BstPAI	GACNNNNGTC	1 cut(s)	1727
BstSCI	CCNGG	7 cut(s)	489, 933, 1021, 1426, 1731, 1817, 2062
BstSFI	CTRYAG	3 cut(s)	813, 2010, 2252
BstSLI	GKGCMC	2 cut(s)	276, 341
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	5 cut(s)	1434, 1681, 1996, 2079, 2082
BstV2I	GAAGAC	1 cut(s)	2297
BstX2I	RGATCY	6 cut(s)	134, 951, 1289, 1540, 1754, 2342
BstXI	CCANNNNNNTGG	3 cut(s)	1294, 1308, 1352
BstYI	RGATCY	6 cut(s)	134, 951, 1289, 1540, 1754, 2342
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	5 cut(s)	40, 98, 274, 455, 1335
BtgI	CCRYGG	2 cut(s)	1393, 1477
BtsCI	GGATG	6 cut(s)	499, 505, 668, 711, 729, 1936
BtsIMutI	CAGTG	2 cut(s)	1642, 2235
BveI	ACCTGC	1 cut(s)	894
Cac8I	GCNNGC	8 cut(s)	115, 224, 247, 369, 505, 1161, 1346, 1470
CciI	TCATGA	1 cut(s)	2310
CfoI	GCGC	2 cut(s)	228, 1875
Cfr13I	GGNCC	7 cut(s)	38, 272, 273, 316, 400, 735, 1076
CseI	GACGC	2 cut(s)	110, 340
CsiI	ACCWGGT	1 cut(s)	1021
Csp6I	GTAC	3 cut(s)	553, 1456, 1922
CviAII	CATG	9 cut(s)	307, 673, 850, 995, 1648, 2171, 2287, 2311, 2339
CviQI	GTAC	3 cut(s)	553, 1456, 1922
DdeI	CTNAG	5 cut(s)	540, 753, 1579, 1914, 2123
DinI	GGCGCC	1 cut(s)	1874
DraIII	CACNNNGTG	1 cut(s)	1660
DriI	GACNNNNNGTC	1 cut(s)	1627
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	6 cut(s)	19, 94, 286, 813, 852, 1492
Eam1105I	GACNNNNNGTC	1 cut(s)	1627
EarI	CTCTTC	6 cut(s)	19, 94, 286, 813, 852, 1492
EciI	GGCGGA	1 cut(s)	1178
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	1191, 2096
Eco147I	AGGCCT	1 cut(s)	1335
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	4 cut(s)	316, 400, 735, 1076
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	978
EcoNI	CCTNNNNNAGG	3 cut(s)	960, 1548, 1847
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRI	GAATTC	3 cut(s)	465, 874, 1186
EcoRII	CCWGG	6 cut(s)	489, 933, 1021, 1426, 1731, 1817
EcoT14I	CCWWGG	2 cut(s)	1191, 2096
EcoT22I	ATGCAT	2 cut(s)	851, 996
EcoT38I	GRGCYC	1 cut(s)	276
EgeI	GGCGCC	1 cut(s)	1874
EheI	GGCGCC	1 cut(s)	1874
ErhI	CCWWGG	2 cut(s)	1191, 2096
FaeI	CATG	9 cut(s)	310, 676, 853, 998, 1651, 2174, 2290, 2314, 2342
FalI	AAGNNNNNCTT	2 cut(s)	1323, 1355
FaqI	GGGAC	3 cut(s)	413, 979, 1426
FatI	CATG	9 cut(s)	306, 672, 849, 994, 1647, 2170, 2286, 2310, 2338
FauI	CCCGC	7 cut(s)	175, 182, 188, 512, 650, 1006, 1687
FokI	GGATG	6 cut(s)	506, 512, 655, 718, 736, 1943
FriOI	GRGCYC	1 cut(s)	276
FspBI	CTAG	4 cut(s)	1491, 1719, 2097, 2135
GlaI	GCGC	2 cut(s)	227, 1874
GsaI	CCCAGC	1 cut(s)	1447
GsuI	CTGGAG	3 cut(s)	49, 917, 1436
HaeII	RGCGCY	1 cut(s)	1876
HaeIII	GGCC	5 cut(s)	40, 98, 274, 455, 1335
HapII	CCGG	2 cut(s)	95, 2063
HgaI	GACGC	2 cut(s)	110, 340
HhaI	GCGC	2 cut(s)	228, 1875
Hin1I	GRCGYC	2 cut(s)	102, 1873
Hin1II	CATG	9 cut(s)	310, 676, 853, 998, 1651, 2174, 2290, 2314, 2342
Hin6I	GCGC	2 cut(s)	226, 1873
HinP1I	GCGC	2 cut(s)	226, 1873
HincII	GTYRAC	2 cut(s)	1953, 2022
HindII	GTYRAC	2 cut(s)	1953, 2022
HindIII	AAGCTT	1 cut(s)	1466
HpaII	CCGG	2 cut(s)	95, 2063
HphI	GGTGA	5 cut(s)	1037, 1433, 1672, 1979, 2092
Hpy166II	GTNNAC	4 cut(s)	892, 909, 1953, 2022
Hpy8I	GTNNAC	4 cut(s)	892, 909, 1953, 2022
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4III	ACNGT	7 cut(s)	899, 979, 1093, 1561, 1637, 1678, 1921
HpyCH4IV	ACGT	2 cut(s)	1949, 2119
HpyF3I	CTNAG	5 cut(s)	540, 753, 1579, 1914, 2123
HpySE526I	ACGT	2 cut(s)	1949, 2119
Hsp92I	GRCGYC	2 cut(s)	102, 1873
Hsp92II	CATG	9 cut(s)	310, 676, 853, 998, 1651, 2174, 2290, 2314, 2342
HspAI	GCGC	2 cut(s)	226, 1873
KasI	GGCGCC	1 cut(s)	1872
KpnI	GGTACC	1 cut(s)	556
LmnI	GCTCC	8 cut(s)	182, 936, 1168, 1455, 1477, 1574, 1644, 1666
Lsp1109I	GCAGC	5 cut(s)	1434, 1681, 1996, 2079, 2082
LweI	GCATC	5 cut(s)	490, 767, 836, 981, 1000
MabI	ACCWGGT	1 cut(s)	1021
MaeI	CTAG	4 cut(s)	1491, 1719, 2097, 2135
MaeII	ACGT	2 cut(s)	1949, 2119
MaeIII	GTNAC	4 cut(s)	791, 1025, 1039, 1650
MbiI	CCGCTC	2 cut(s)	113, 177
MboII	GAAGA	9 cut(s)	6, 81, 273, 400, 800, 869, 1403, 1509, 2302
MfeI	CAATTG	1 cut(s)	1241
MflI	RGATCY	6 cut(s)	134, 951, 1289, 1540, 1754, 2342
MhlI	GDGCHC	2 cut(s)	276, 341
Mly113I	GGCGCC	1 cut(s)	1873
MlyI	GAGTC	3 cut(s)	5, 50, 2017
MmeI	TCCRAC	2 cut(s)	33, 1054
Mph1103I	ATGCAT	2 cut(s)	851, 996
MseI	TTAA	6 cut(s)	363, 1404, 1713, 1838, 2304, 2350
MslI	CAYNNNNRTG	1 cut(s)	2304
MspA1I	CMGCKG	1 cut(s)	1447
MspI	CCGG	2 cut(s)	95, 2063
MspR9I	CCNGG	7 cut(s)	491, 935, 1023, 1428, 1733, 1819, 2064
MunI	CAATTG	1 cut(s)	1241
Mva1269I	GAATGC	3 cut(s)	152, 1161, 1366
MvaI	CCWGG	6 cut(s)	491, 935, 1023, 1428, 1733, 1819
MvnI	CGCG	1 cut(s)	226
NarI	GGCGCC	1 cut(s)	1873
NciI	CCSGG	1 cut(s)	2064
NlaIII	CATG	9 cut(s)	310, 676, 853, 998, 1651, 2174, 2290, 2314, 2342
NmuCI	GTSAC	1 cut(s)	1025
NsiI	ATGCAT	2 cut(s)	851, 996
NspI	RCATGY	1 cut(s)	1651
PagI	TCATGA	1 cut(s)	2310
PceI	AGGCCT	1 cut(s)	1335
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 309
PctI	GAATGC	3 cut(s)	152, 1161, 1366
PfeI	GAWTC	7 cut(s)	485, 524, 1213, 1698, 1909, 2143, 2156
PfoI	TCCNGGA	2 cut(s)	933, 1426
Ple19I	CGATCG	1 cut(s)	2335
PleI	GAGTC	3 cut(s)	5, 50, 2017
PluTI	GGCGCC	1 cut(s)	1876
PpsI	GAGTC	3 cut(s)	5, 50, 2017
PshAI	GACNNNNGTC	1 cut(s)	1727
PshBI	ATTAAT	1 cut(s)	1404
Psp6I	CCWGG	6 cut(s)	489, 933, 1021, 1426, 1731, 1817
PspFI	CCCAGC	1 cut(s)	1443
PspGI	CCWGG	6 cut(s)	489, 933, 1021, 1426, 1731, 1817
PspOMI	GGGCCC	1 cut(s)	272
PspPI	GGNCC	7 cut(s)	38, 272, 273, 316, 400, 735, 1076
PstI	CTGCAG	2 cut(s)	2014, 2256
PsuI	RGATCY	6 cut(s)	134, 951, 1289, 1540, 1754, 2342
PvuI	CGATCG	1 cut(s)	2335
PvuII	CAGCTG	1 cut(s)	1447
RsaI	GTAC	3 cut(s)	554, 1457, 1923
RsaNI	GTAC	3 cut(s)	553, 1456, 1922
RseI	CAYNNNNRTG	1 cut(s)	2304
SaqAI	TTAA	6 cut(s)	363, 1404, 1713, 1838, 2304, 2350
Sau96I	GGNCC	7 cut(s)	38, 272, 273, 316, 400, 735, 1076
SchI	GAGTC	3 cut(s)	5, 50, 2017
ScrFI	CCNGG	7 cut(s)	491, 935, 1023, 1428, 1733, 1819, 2064
SduI	GDGCHC	2 cut(s)	276, 341
SexAI	ACCWGGT	1 cut(s)	1021
SfaNI	GCATC	5 cut(s)	490, 767, 836, 981, 1000
SfcI	CTRYAG	3 cut(s)	813, 2010, 2252
SfoI	GGCGCC	1 cut(s)	1874
SinI	GGWCC	4 cut(s)	316, 400, 735, 1076
SmiMI	CAYNNNNRTG	1 cut(s)	2304
SmlI	CTYRAG	2 cut(s)	560, 2323
SmoI	CTYRAG	2 cut(s)	560, 2323
SpeI	ACTAGT	1 cut(s)	1490
SseBI	AGGCCT	1 cut(s)	1335
SspDI	GGCGCC	1 cut(s)	1872
SspI	AATATT	2 cut(s)	771, 1408
SspMI	CTAG	4 cut(s)	1491, 1719, 2097, 2135
StuI	AGGCCT	1 cut(s)	1335
StyD4I	CCNGG	7 cut(s)	489, 933, 1021, 1426, 1731, 1817, 2062
StyI	CCWWGG	2 cut(s)	1191, 2096
TaaI	ACNGT	7 cut(s)	899, 979, 1093, 1561, 1637, 1678, 1921
TaiI	ACGT	2 cut(s)	1952, 2122
TaqI	TCGA	5 cut(s)	579, 624, 1594, 2106, 2335
TaqII	GACCGA	1 cut(s)	723
TatI	WGTACW	2 cut(s)	1455, 1921
TauI	GCSGC	8 cut(s)	107, 110, 113, 129, 132, 191, 231, 294
TfiI	GAWTC	7 cut(s)	485, 524, 1213, 1698, 1909, 2143, 2156
Tru1I	TTAA	6 cut(s)	363, 1404, 1713, 1838, 2304, 2350
Tru9I	TTAA	6 cut(s)	363, 1404, 1713, 1838, 2304, 2350
TscAI	CASTG	2 cut(s)	1642, 2242
TseFI	GTSAC	1 cut(s)	1025
TseI	GCWGC	5 cut(s)	1447, 1669, 2009, 2067, 2070
Tsp45I	GTSAC	1 cut(s)	1025
TspDTI	ATGAA	6 cut(s)	849, 866, 1239, 1629, 2019, 2303
TspGWI	ACGGA	2 cut(s)	1190, 1382
TspRI	CASTG	2 cut(s)	1642, 2242
VpaK11BI	GGWCC	4 cut(s)	316, 400, 735, 1076
VspI	ATTAAT	1 cut(s)	1404
XagI	CCTNNNNNAGG	3 cut(s)	960, 1548, 1847
XapI	RAATTY	8 cut(s)	391, 465, 874, 1186, 1201, 1616, 2056, 2245
XceI	RCATGY	1 cut(s)	1651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1352
XmaJI	CCTAGG	1 cut(s)	2096
XspI	CTAG	4 cut(s)	1491, 1719, 2097, 2135
Zsp2I	ATGCAT	2 cut(s)	851, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.