Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036177.1

Orthogroup ID

OG0008419

Physical Location & Seq

Genomic Coordinates Reverse (-)

3453 .. 4997

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036177.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ctgctctctggtgattttctcaggtttgatctgatctacttaatccttgacaaggctgatgagcagacagacaggcgccttgcaaagcatattgttgccttgcactttgagaatcctgagactgtacagcaggatgttttagaccttgccacgttgactgcttatgtgggatatgcccgaaagcatattcacccacaattatctgatgaagctgcagaggagttgactcgtggctatgtagagttgaggaggagaggaaattttccgggcagcagcaaaaaggtgataacagcaactcctaggcaaatcgagagtttgatacgtcttagtgaagctctagctcggattcgtttttcagaatcggttgaaaagcatgatgtaatggaggcatttcggcttcttgaagttgcaatgcaacaatcagcaacagatcactccactggaacgatcgacatggatcttattaatactggaatttcggcaagtgaaagaatgagacgggagaatctagtgtcatcagctcgcaacttaattatggagaagatgcaacttgggggaccctcaatgcgtttgttagagctgctggaggatctgaagaagcagagttctggcagtgaaattcacctcaacgatcttaggaatgcaattgctacgcttgcaagtgagggatttgtcgctgttcatggagacagtgtcaaaagagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0000785 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

235

Amino Acids

26.41

Weight (kDa)

5.94

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16440
fragaria_vesca	FvH4_2g09990
malus_domestica	MD00G1085600.v1.1 MD10G1066500.v1.1
prunus_persica	Prupe.8G088400_v2.0.a1
pyrus_communis	pycom05g04970 pycom05g04980 pycom10g05200
rosa_chinensis	RchiOBHm_Chr6g0266881 RchiOBHm_Chr6g0266891
rosa_laevigata	RLG00000014063 RLG00000014064 RLG00000014065
rosa_multiflora	Rmu_co8507775.1_g000001 Rmu_sc0021142.1_g000001 Rmu_sc0036177.1_g000001
rosa_roxburghii	Rroxscaffold_7G00201330
rosa_rugosa	Rorug06G0027900
rosa_samantha	Rh6AG149000 Rh6BG150000 Rh6CG144900 Rh6DG134200
rosa_wichuraiana	Rw6G012890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	465, 597
AcsI	RAATTY	3 cut(s)	259, 474, 618
AcuI	CTGAAG	1 cut(s)	614
AcyI	GRCGYC	1 cut(s)	76
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	368, 404
AluBI	AGCT	5 cut(s)	212, 335, 341, 521, 580
AluI	AGCT	5 cut(s)	212, 335, 341, 521, 580
Alw26I	GTCTC	3 cut(s)	113, 490, 681
AlwI	GGATC	2 cut(s)	465, 597
ApeKI	GCWGC	4 cut(s)	212, 270, 273, 580
ApoI	RAATTY	3 cut(s)	259, 474, 618
AseI	ATTAAT	1 cut(s)	465
AspA2I	CCTAGG	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	4 cut(s)	23, 182, 295, 614
AvaII	GGWCC	1 cut(s)	557
AvrII	CCTAGG	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	228
BbvI	GCAGC	4 cut(s)	199, 282, 285, 567
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	3 cut(s)	113, 490, 681
BfaI	CTAG	3 cut(s)	300, 338, 509
BfmI	CTRYAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	79
BisI	GCNGC	4 cut(s)	213, 271, 274, 581
BlnI	CCTAGG	1 cut(s)	299
BlsI	GCNGC	4 cut(s)	214, 272, 275, 582
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	3 cut(s)	77, 558, 559
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	299
BsaXI	ACNNNNNCTCC	4 cut(s)	280, 310, 678, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	445, 475
Bse3DI	GCAATG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	34, 108
BseNI	ACTGG	2 cut(s)	445, 475
BseRI	GAGGAG	3 cut(s)	233, 262, 265
BseXI	GCAGC	4 cut(s)	199, 282, 285, 567
Bsh1285I	CGRYCG	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	3 cut(s)	113, 490, 681
BsmBI	CGTCTC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	570
BsmI	GAATGC	1 cut(s)	646
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	7 cut(s)	28, 33, 430, 447, 457, 589, 631
BspCNI	CTCAG	2 cut(s)	33, 109
BspLI	GGNNCC	3 cut(s)	77, 558, 559
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	2 cut(s)	465, 597
BspT107I	GGYRCC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	417
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	445, 475
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	7 cut(s)	28, 33, 430, 447, 457, 589, 631
BssNI	GRCGYC	1 cut(s)	76
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	124, 692
BstACI	GRCGYC	1 cut(s)	76
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	523, 657
BstDEI	CTNAG	4 cut(s)	20, 117, 326, 635
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	7 cut(s)	31, 36, 433, 450, 460, 592, 634
BstMAI	GTCTC	3 cut(s)	113, 490, 681
BstMBI	GATC	7 cut(s)	28, 33, 430, 447, 457, 589, 631
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	1 cut(s)	656
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	4 cut(s)	199, 282, 285, 567
BstX2I	RGATCY	2 cut(s)	457, 589
BstYI	RGATCY	2 cut(s)	457, 589
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	3 cut(s)	438, 619, 697
Cac8I	GCNNGC	2 cut(s)	523, 657
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	3 cut(s)	374, 454, 683
CviJI	RGCY	8 cut(s)	56, 212, 234, 335, 341, 397, 521, 580
CviKI_1	RGCY	8 cut(s)	56, 212, 234, 335, 341, 397, 521, 580
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	4 cut(s)	20, 117, 326, 635
DinI	GGCGCC	1 cut(s)	77
DpnI	GATC	7 cut(s)	30, 35, 432, 449, 459, 591, 633
DpnII	GATC	7 cut(s)	28, 33, 430, 447, 457, 589, 631
Eco130I	CCWWGG	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	614
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	557
EcoT14I	CCWWGG	1 cut(s)	299
EgeI	GGCGCC	1 cut(s)	77
EheI	GGCGCC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	3 cut(s)	377, 457, 686
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	3 cut(s)	373, 453, 682
Fnu4HI	GCNGC	4 cut(s)	213, 271, 274, 581
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	4 cut(s)	213, 271, 274, 581
FspBI	CTAG	3 cut(s)	300, 338, 509
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	4 cut(s)	213, 271, 274, 581
GsuI	CTGGAG	1 cut(s)	605
HaeII	RGCGCY	1 cut(s)	79
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	1 cut(s)	78
Hin1I	GRCGYC	1 cut(s)	76
Hin1II	CATG	3 cut(s)	377, 457, 686
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	2 cut(s)	156, 225
HindII	GTYRAC	2 cut(s)	156, 225
HinfI	GANTC	5 cut(s)	112, 226, 346, 359, 505
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	4 cut(s)	23, 182, 295, 614
Hpy166II	GTNNAC	2 cut(s)	156, 225
Hpy188I	TCNGA	5 cut(s)	33, 205, 345, 358, 594
Hpy188III	TCNNGA	3 cut(s)	116, 310, 401
Hpy8I	GTNNAC	2 cut(s)	156, 225
HpyCH4III	ACNGT	2 cut(s)	124, 692
HpyCH4IV	ACGT	2 cut(s)	152, 322
HpyCH4V	TGCA	8 cut(s)	83, 103, 215, 410, 415, 547, 644, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	656
HpyF3I	CTNAG	4 cut(s)	20, 117, 326, 635
HpySE526I	ACGT	2 cut(s)	152, 322
Hsp92I	GRCGYC	1 cut(s)	76
Hsp92II	CATG	3 cut(s)	377, 457, 686
HspAI	GCGC	1 cut(s)	76
KasI	GGCGCC	1 cut(s)	75
KflI	GGGWCCC	1 cut(s)	557
Kzo9I	GATC	7 cut(s)	28, 33, 430, 447, 457, 589, 631
LpnPI	CCDG	9 cut(s)	7, 58, 116, 129, 279, 426, 456, 569, 594
Lsp1109I	GCAGC	4 cut(s)	199, 282, 285, 567
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	3 cut(s)	300, 338, 509
MaeII	ACGT	2 cut(s)	152, 322
MalI	GATC	7 cut(s)	30, 35, 432, 449, 459, 591, 633
MboI	GATC	7 cut(s)	28, 33, 430, 447, 457, 589, 631
MboII	GAAGA	2 cut(s)	553, 607
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	2 cut(s)	457, 589
MluCI	AATT	6 cut(s)	197, 259, 474, 531, 618, 645
Mly113I	GGCGCC	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	9 cut(s)	211, 240, 243, 248, 379, 571, 580, 635, 658
MseI	TTAA	3 cut(s)	41, 465, 530
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	645
Mva1269I	GAATGC	1 cut(s)	646
MwoI	GCNNNNNNNGC	1 cut(s)	656
NarI	GGCGCC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	7 cut(s)	28, 33, 430, 447, 457, 589, 631
NlaIII	CATG	3 cut(s)	377, 457, 686
NlaIV	GGNNCC	3 cut(s)	77, 558, 559
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	4 cut(s)	112, 346, 359, 505
PflFI	GACNNNGTC	1 cut(s)	692
PkrI	GCNGC	4 cut(s)	214, 272, 275, 582
Ple19I	CGATCG	1 cut(s)	450
PleI	GAGTC	1 cut(s)	220
PluTI	GGCGCC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	557
PshBI	ATTAAT	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	557
PspN4I	GGNNCC	3 cut(s)	77, 558, 559
PspPI	GGNCC	1 cut(s)	557
PspPPI	RGGWCCY	1 cut(s)	557
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	457, 589
PsyI	GACNNNGTC	1 cut(s)	692
PvuI	CGATCG	1 cut(s)	450
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	41, 465, 530
SatI	GCNGC	4 cut(s)	213, 271, 274, 581
Sau3AI	GATC	7 cut(s)	28, 33, 430, 447, 457, 589, 631
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	213
SfoI	GGCGCC	1 cut(s)	77
SinI	GGWCC	1 cut(s)	557
Sse9I	AATT	6 cut(s)	197, 259, 474, 531, 618, 645
SspDI	GGCGCC	1 cut(s)	75
SspMI	CTAG	3 cut(s)	300, 338, 509
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	2 cut(s)	124, 692
TaiI	ACGT	2 cut(s)	155, 325
TaqI	TCGA	2 cut(s)	309, 450
TasI	AATT	6 cut(s)	197, 259, 474, 531, 618, 645
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	4 cut(s)	112, 346, 359, 505
Tru1I	TTAA	3 cut(s)	41, 465, 530
Tru9I	TTAA	3 cut(s)	41, 465, 530
TscAI	CASTG	3 cut(s)	445, 619, 697
TseI	GCWGC	4 cut(s)	212, 270, 273, 580
TspDTI	ATGAA	2 cut(s)	222, 671
TspRI	CASTG	3 cut(s)	445, 619, 697
Tth111I	GACNNNGTC	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	557
VspI	ATTAAT	1 cut(s)	465
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	3 cut(s)	259, 474, 618
XmaJI	CCTAGG	1 cut(s)	299
XspI	CTAG	3 cut(s)	300, 338, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.