Rmu_co8507775.1_g000001

Belongs to the MCM family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8507775.1
Physical Location & Seq
Forward (+)
1 .. 3273
3273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8507775.1_g000001.1.cds

Sequence Viewer

Length: 1548 bp
ccctcttcggaaggcggcgacagctacggcatggacgaggaccgccccaccttcgtctggggcaccaatatcagcgtcaatgatgttaagctcgccattattaggtttttgaagaattttcgggaccaatcgcagaactccgagagcgattatcttaccgaagggaaatacattgaggccatcaagagaattctggaaatggaaggcgattccctggatgtggatgcccgcaatgtgtttgattatgattccgatttgtatgctaagatggtcaggtacccacttgaggttcttgctattttcgacattgttttgatggaattgttgcctgtcataaaccccttgttcgagaagcacattcagactcgcattttcaatctcaaaacatcaacatccatgagaaatctgaacccgtctgatattgagaggatggtttcaataaaggggatgattattcggtccagttcaataatacctgagataagggaagcaatatttaggtgcctcgtgtgtggttactactctgaccctcttcctgtagaaaaagggaaaataaatgaacctacaagatgcatgaaggaagagtgtcaagccaagaattctatgacactagttcacaaccgttgcaggtttactgataaacagattgtgaggctccaagagacgcctgatgaaatccctgaaggagggacaccgcatactgtgagtttgttgatgcatgacaaactggttgatgcgggaaaaccaggtgacagagttgaggttactgggatatatcgggctatgagcgtaagagttggacctacacagagaactgtaaaatcattattcaagacttatattgattgtctgcatataaaaaagtctgacaagtcaagaatgctggcggaggagcagacggaagttgagaattccttgggtggaaattcagatgagattctttttgatgaaaagaaggtggaacaattgaaagagctggcaaaacagcctgatatatatgatcgcctaaccagatctttggcaccaaacatctgggagttagatgatgtcaagaaaggccttctttgccagctttttggtgggaatgctttgaagttgccatctggtgcaaggttccgtggggatattaatattcttcttgttggtgatcctggaaccagcaagtcccagctgctccagtacatacacaagcttgctccccgtggcatatacactagtggaagagggagttctgctgttggtttgactgcttatgttgcaaaagatcctgaaacaggggaaactgttttagagagtggagccttagttttgagtgatcgaggcatttgttgcattgatgaatttgacaaaatgtctgacagtgcaaggagcatgttacacgaggtgatggagcagcaaactgtgtcaatagcaaaggcgggaatcattgcttcccttaatgctaggacatcagtcctggcttgtgcaaatccaagtggatctcgctataatcctcgcttgtcagtaattgacaacatacaccttcctcctaccttattatccaggtaa

Protein Analysis

515

Amino Acids

57.55

Weight (kDa)

5.8

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 618
Acc65I GGTACC 1 cut(s) 276
AccB1I GGYRCC 4 cut(s) 62, 276, 501, 1021
AciI CCGC 7 cut(s) 15, 43, 229, 695, 737, 887, 1418
AclWI GGATC 3 cut(s) 1142, 1259, 1486
AcsI RAATTY 6 cut(s) 115, 189, 598, 910, 925, 1340
AcuI CTGAAG 1 cut(s) 702
AcyI GRCGYC 1 cut(s) 665
AdeI CACNNNGTG 1 cut(s) 1384
AfaI GTAC 2 cut(s) 278, 1181
AfiI CCNNNNNNNGG 6 cut(s) 57, 102, 220, 286, 686, 1274
AgsI TTSAA 7 cut(s) 112, 376, 438, 468, 832, 970, 1093
AhdI GACNNNNNGTC 1 cut(s) 1351
AhlI ACTAGT 2 cut(s) 610, 1214
AjnI CCWGG 5 cut(s) 213, 745, 1150, 1455, 1541
AluBI AGCT 6 cut(s) 24, 91, 976, 1072, 1171, 1192
AluI AGCT 6 cut(s) 24, 91, 976, 1072, 1171, 1192
Alw26I GTCTC 1 cut(s) 656
AlwI GGATC 3 cut(s) 1142, 1259, 1486
AoxI GGCC 2 cut(s) 177, 1057
ApeKI GCWGC 2 cut(s) 1171, 1393
ApoI RAATTY 6 cut(s) 115, 189, 598, 910, 925, 1340
AseI ATTAAT 1 cut(s) 1128
Asp718I GGTACC 1 cut(s) 276
AspS9I GGNCC 4 cut(s) 40, 124, 459, 800
AsuHPI GGTGA 3 cut(s) 761, 1157, 1396
AvaII GGWCC 4 cut(s) 40, 124, 459, 800
BaeGI GKGCMC 1 cut(s) 65
BanI GGYRCC 4 cut(s) 62, 276, 501, 1021
BauI CACGAG 2 cut(s) 506, 1379
BbvI GCAGC 2 cut(s) 1158, 1405
BccI CCATC 6 cut(s) 188, 262, 310, 424, 1108, 1381
BceAI ACGGC 1 cut(s) 43
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 5 cut(s) 215, 747, 1152, 1457, 1543
BcoDI GTCTC 1 cut(s) 656
BcuI ACTAGT 2 cut(s) 610, 1214
BfaI CTAG 3 cut(s) 611, 1215, 1443
BfmI CTRYAG 1 cut(s) 537
BfuAI ACCTGC 1 cut(s) 618
BglII AGATCT 1 cut(s) 1013
BisI GCNGC 3 cut(s) 16, 1172, 1394
BlsI GCNGC 3 cut(s) 17, 1173, 1395
Bme1390I CCNGG 5 cut(s) 215, 747, 1152, 1457, 1543
Bme18I GGWCC 4 cut(s) 40, 124, 459, 800
BmeRI GACNNNNNGTC 1 cut(s) 1351
BmgT120I GGNCC 4 cut(s) 40, 124, 459, 800
BmiI GGNNCC 9 cut(s) 64, 125, 278, 503, 656, 1023, 1115, 1156, 1300
BmrFI CCNGG 5 cut(s) 215, 747, 1152, 1457, 1543
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 4 cut(s) 214, 560, 705, 724
BmuI ACTGGG 1 cut(s) 777
BoxI GACNNNNGTC 1 cut(s) 1451
BpmI CTGGAG 1 cut(s) 1160
BpuEI CTTGAG 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 665
BsaJI CCNNGG 4 cut(s) 213, 915, 1117, 1201
BsaXI ACNNNNNCTCC 2 cut(s) 1290, 1320
Bsc4I CCNNNNNNNGG 6 cut(s) 57, 102, 220, 286, 686, 1274
Bse1I ACTGG 4 cut(s) 462, 732, 772, 1177
Bse3DI GCAATG 2 cut(s) 238, 1425
BseBI CCWGG 5 cut(s) 215, 747, 1152, 1457, 1543
BseDI CCNNGG 4 cut(s) 213, 915, 1117, 1201
BseGI GGATG 5 cut(s) 223, 229, 392, 435, 453
BseLI CCNNNNNNNGG 6 cut(s) 57, 102, 220, 286, 686, 1274
BseMI GCAATG 2 cut(s) 238, 1425
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 4 cut(s) 462, 732, 772, 1177
BseRI GAGGAG 1 cut(s) 905
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 2 cut(s) 1158, 1405
BseYI CCCAGC 1 cut(s) 1167
BshFI GGCC 2 cut(s) 179, 1059
BshNI GGYRCC 4 cut(s) 62, 276, 501, 1021
BslFI GGGAC 3 cut(s) 137, 703, 1150
BslI CCNNNNNNNGG 6 cut(s) 57, 102, 220, 286, 686, 1274
BsmAI GTCTC 1 cut(s) 656
BsmBI CGTCTC 1 cut(s) 656
BsmFI GGGAC 3 cut(s) 137, 703, 1150
BsmI GAATGC 2 cut(s) 885, 1090
BsnI GGCC 2 cut(s) 179, 1059
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 6 cut(s) 1000, 1013, 1147, 1264, 1315, 1478
BspACI CCGC 7 cut(s) 15, 43, 229, 695, 737, 887, 1418
BspANI GGCC 2 cut(s) 179, 1059
BspCNI CTCAG 1 cut(s) 469
BspLI GGNNCC 9 cut(s) 64, 125, 278, 503, 656, 1023, 1115, 1156, 1300
BspMI ACCTGC 1 cut(s) 618
BspPI GGATC 3 cut(s) 1142, 1259, 1486
BspT107I GGYRCC 4 cut(s) 62, 276, 501, 1021
BsrDI GCAATG 2 cut(s) 238, 1425
BsrI ACTGG 4 cut(s) 462, 732, 772, 1177
BssECI CCNNGG 4 cut(s) 213, 915, 1117, 1201
BssMI GATC 6 cut(s) 1000, 1013, 1147, 1264, 1315, 1478
BssNI GRCGYC 1 cut(s) 665
BssSI CACGAG 2 cut(s) 506, 1379
BssT1I CCWWGG 1 cut(s) 915
Bst2BI CACGAG 2 cut(s) 506, 1379
Bst2UI CCWGG 5 cut(s) 215, 747, 1152, 1457, 1543
Bst4CI ACNGT 6 cut(s) 623, 703, 817, 1285, 1361, 1402
Bst6I CTCTTC 4 cut(s) 10, 537, 576, 1216
BstACI GRCGYC 1 cut(s) 665
BstAPI GCANNNNNTGC 1 cut(s) 1329
BstC8I GCNNGC 6 cut(s) 93, 229, 885, 978, 1070, 1194
BstDEI CTNAG 3 cut(s) 264, 477, 1303
BstDSI CCRYGG 2 cut(s) 1117, 1201
BstENI CCTNNNNNAGG 2 cut(s) 684, 1272
BstF5I GGATG 5 cut(s) 223, 229, 392, 435, 453
BstKTI GATC 6 cut(s) 1003, 1016, 1150, 1267, 1318, 1481
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 6 cut(s) 1000, 1013, 1147, 1264, 1315, 1478
BstMWI GCNNNNNNNGC 4 cut(s) 21, 1065, 1256, 1329
BstNI CCWGG 5 cut(s) 215, 747, 1152, 1457, 1543
BstNSI RCATGY 1 cut(s) 1375
BstPAI GACNNNNGTC 1 cut(s) 1451
BstSCI CCNGG 5 cut(s) 213, 745, 1150, 1455, 1541
BstSFI CTRYAG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 1158, 1405
BstX2I RGATCY 3 cut(s) 1013, 1264, 1478
BstXI CCANNNNNNTGG 3 cut(s) 1018, 1032, 1076
BstYI RGATCY 3 cut(s) 1013, 1264, 1478
BsuRI GGCC 2 cut(s) 179, 1059
BtgI CCRYGG 2 cut(s) 1117, 1201
BtsCI GGATG 5 cut(s) 223, 229, 392, 435, 453
BtsIMutI CAGTG 1 cut(s) 1366
BveI ACCTGC 1 cut(s) 618
Cac8I GCNNGC 6 cut(s) 93, 229, 885, 978, 1070, 1194
Cfr13I GGNCC 4 cut(s) 40, 124, 459, 800
CseI GACGC 2 cut(s) 64, 673
CsiI ACCWGGT 1 cut(s) 745
Csp6I GTAC 2 cut(s) 277, 1180
CviAII CATG 5 cut(s) 31, 397, 574, 719, 1372
CviQI GTAC 2 cut(s) 277, 1180
DdeI CTNAG 3 cut(s) 264, 477, 1303
DpnI GATC 6 cut(s) 1002, 1015, 1149, 1266, 1317, 1480
DpnII GATC 6 cut(s) 1000, 1013, 1147, 1264, 1315, 1478
DraIII CACNNNGTG 1 cut(s) 1384
DriI GACNNNNNGTC 1 cut(s) 1351
Eam1104I CTCTTC 4 cut(s) 10, 537, 576, 1216
Eam1105I GACNNNNNGTC 1 cut(s) 1351
EarI CTCTTC 4 cut(s) 10, 537, 576, 1216
EciI GGCGGA 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 915
Eco147I AGGCCT 1 cut(s) 1059
Eco47I GGWCC 4 cut(s) 40, 124, 459, 800
Eco57I CTGAAG 1 cut(s) 702
EcoNI CCTNNNNNAGG 2 cut(s) 684, 1272
EcoRI GAATTC 3 cut(s) 189, 598, 910
EcoRII CCWGG 5 cut(s) 213, 745, 1150, 1455, 1541
EcoT14I CCWWGG 1 cut(s) 915
EcoT22I ATGCAT 2 cut(s) 575, 720
ErhI CCWWGG 1 cut(s) 915
Esp3I CGTCTC 1 cut(s) 656
FaeI CATG 5 cut(s) 34, 400, 577, 722, 1375
FalI AAGNNNNNCTT 2 cut(s) 1047, 1079
FaqI GGGAC 3 cut(s) 137, 703, 1150
FatI CATG 5 cut(s) 30, 396, 573, 718, 1371
FauI CCCGC 3 cut(s) 236, 730, 1411
Fnu4HI GCNGC 3 cut(s) 16, 1172, 1394
FokI GGATG 5 cut(s) 230, 236, 379, 442, 460
Fsp4HI GCNGC 3 cut(s) 16, 1172, 1394
FspBI CTAG 3 cut(s) 611, 1215, 1443
GluI GCNGC 3 cut(s) 16, 1172, 1394
GsaI CCCAGC 1 cut(s) 1171
GsuI CTGGAG 1 cut(s) 1160
HaeIII GGCC 2 cut(s) 179, 1059
HgaI GACGC 2 cut(s) 64, 673
Hin1I GRCGYC 1 cut(s) 665
Hin1II CATG 5 cut(s) 34, 400, 577, 722, 1375
HindIII AAGCTT 1 cut(s) 1190
HinfI GANTC 5 cut(s) 209, 248, 364, 937, 1422
HphI GGTGA 3 cut(s) 761, 1157, 1396
Hpy166II GTNNAC 2 cut(s) 616, 633
Hpy188III TCNNGA 8 cut(s) 122, 184, 194, 349, 832, 876, 1051, 1268
Hpy8I GTNNAC 2 cut(s) 616, 633
HpyAV CCTTC 9 cut(s) 5, 61, 155, 197, 571, 677, 949, 1070, 1532
HpyCH4III ACNGT 6 cut(s) 623, 703, 817, 1285, 1361, 1402
HpyCH4V TGCA 9 cut(s) 573, 627, 718, 853, 1109, 1259, 1332, 1364, 1466
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 1065, 1256, 1329
HpyF3I CTNAG 3 cut(s) 264, 477, 1303
Hsp92I GRCGYC 1 cut(s) 665
Hsp92II CATG 5 cut(s) 34, 400, 577, 722, 1375
KpnI GGTACC 1 cut(s) 280
Kzo9I GATC 6 cut(s) 1000, 1013, 1147, 1264, 1315, 1478
LmnI GCTCC 7 cut(s) 660, 892, 1179, 1201, 1298, 1368, 1390
Lsp1109I GCAGC 2 cut(s) 1158, 1405
LweI GCATC 4 cut(s) 214, 560, 705, 724
MabI ACCWGGT 1 cut(s) 745
MaeI CTAG 3 cut(s) 611, 1215, 1443
MaeIII GTNAC 4 cut(s) 515, 749, 763, 1374
MalI GATC 6 cut(s) 1002, 1015, 1149, 1266, 1317, 1480
MboI GATC 6 cut(s) 1000, 1013, 1147, 1264, 1315, 1478
MboII GAAGA 5 cut(s) 124, 524, 593, 1127, 1233
MfeI CAATTG 1 cut(s) 965
MflI RGATCY 3 cut(s) 1013, 1264, 1478
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 9 cut(s) 115, 189, 320, 598, 910, 925, 965, 1340, 1506
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 778
Mph1103I ATGCAT 2 cut(s) 575, 720
MseI TTAA 3 cut(s) 87, 1128, 1437
MspA1I CMGCKG 1 cut(s) 1171
MspR9I CCNGG 5 cut(s) 215, 747, 1152, 1457, 1543
MunI CAATTG 1 cut(s) 965
Mva1269I GAATGC 2 cut(s) 885, 1090
MvaI CCWGG 5 cut(s) 215, 747, 1152, 1457, 1543
MwoI GCNNNNNNNGC 4 cut(s) 21, 1065, 1256, 1329
NdeII GATC 6 cut(s) 1000, 1013, 1147, 1264, 1315, 1478
NlaIII CATG 5 cut(s) 34, 400, 577, 722, 1375
NlaIV GGNNCC 9 cut(s) 64, 125, 278, 503, 656, 1023, 1115, 1156, 1300
NmuCI GTSAC 1 cut(s) 749
NsiI ATGCAT 2 cut(s) 575, 720
NspI RCATGY 1 cut(s) 1375
PceI AGGCCT 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 2 cut(s) 885, 1090
PfeI GAWTC 4 cut(s) 209, 248, 937, 1422
PfoI TCCNGGA 1 cut(s) 1150
PkrI GCNGC 3 cut(s) 17, 1173, 1395
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PshAI GACNNNNGTC 1 cut(s) 1451
PshBI ATTAAT 1 cut(s) 1128
Psp6I CCWGG 5 cut(s) 213, 745, 1150, 1455, 1541
PspFI CCCAGC 1 cut(s) 1167
PspGI CCWGG 5 cut(s) 213, 745, 1150, 1455, 1541
PspN4I GGNNCC 9 cut(s) 64, 125, 278, 503, 656, 1023, 1115, 1156, 1300
PspPI GGNCC 4 cut(s) 40, 124, 459, 800
PsuI RGATCY 3 cut(s) 1013, 1264, 1478
PvuII CAGCTG 1 cut(s) 1171
RsaI GTAC 2 cut(s) 278, 1181
RsaNI GTAC 2 cut(s) 277, 1180
SaqAI TTAA 3 cut(s) 87, 1128, 1437
SatI GCNGC 3 cut(s) 16, 1172, 1394
Sau3AI GATC 6 cut(s) 1000, 1013, 1147, 1264, 1315, 1478
Sau96I GGNCC 4 cut(s) 40, 124, 459, 800
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 5 cut(s) 215, 747, 1152, 1457, 1543
SduI GDGCHC 1 cut(s) 65
SexAI ACCWGGT 1 cut(s) 745
SfaNI GCATC 4 cut(s) 214, 560, 705, 724
SfcI CTRYAG 1 cut(s) 537
SinI GGWCC 4 cut(s) 40, 124, 459, 800
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SpeI ACTAGT 2 cut(s) 610, 1214
Sse9I AATT 9 cut(s) 115, 189, 320, 598, 910, 925, 965, 1340, 1506
SseBI AGGCCT 1 cut(s) 1059
SsiI CCGC 7 cut(s) 15, 43, 229, 695, 737, 887, 1418
SspI AATATT 2 cut(s) 495, 1132
SspMI CTAG 3 cut(s) 611, 1215, 1443
StuI AGGCCT 1 cut(s) 1059
StyD4I CCNGG 5 cut(s) 213, 745, 1150, 1455, 1541
StyI CCWWGG 1 cut(s) 915
TaaI ACNGT 6 cut(s) 623, 703, 817, 1285, 1361, 1402
TaqI TCGA 3 cut(s) 303, 348, 1318
TaqII GACCGA 1 cut(s) 447
TasI AATT 9 cut(s) 115, 189, 320, 598, 910, 925, 965, 1340, 1506
TatI WGTACW 1 cut(s) 1179
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 4 cut(s) 209, 248, 937, 1422
Tru1I TTAA 3 cut(s) 87, 1128, 1437
Tru9I TTAA 3 cut(s) 87, 1128, 1437
TscAI CASTG 1 cut(s) 1366
TseFI GTSAC 1 cut(s) 749
TseI GCWGC 2 cut(s) 1171, 1393
Tsp45I GTSAC 1 cut(s) 749
TspDTI ATGAA 5 cut(s) 573, 590, 687, 963, 1353
TspGWI ACGGA 2 cut(s) 914, 1106
TspRI CASTG 1 cut(s) 1366
VpaK11BI GGWCC 4 cut(s) 40, 124, 459, 800
VspI ATTAAT 1 cut(s) 1128
XagI CCTNNNNNAGG 2 cut(s) 684, 1272
XapI RAATTY 6 cut(s) 115, 189, 598, 910, 925, 1340
XceI RCATGY 1 cut(s) 1375
XcmI CCANNNNNNNNNTGG 1 cut(s) 1076
XspI CTAG 3 cut(s) 611, 1215, 1443
Zsp2I ATGCAT 2 cut(s) 575, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.