Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005074

Physical Location & Seq

Genomic Coordinates Forward (+)

18593120 .. 18593735

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGATTTTTCCTTTTCTTTCGTGCAGATACTTGACCGGGGAGAAATTTAAGCAGCCGATTATTGTTTACAACTATCCGAAAAAGACCAAAGCCTTCTATAGCCTCAATGAAGACGGTGAGACAGTGTTTGCTATGGATGTCGTCGTCCCAAAACTGGACATGCGGCGCTTTGGGACTATTAAGCATAGCGGCTTTGATTTAGGGTTTGAACGGATGGTTATGTTTGCCACTGGGCTTGACAACATTAGAGATTGCATTTCCTACCCTAGAGATCGAGGAAGAGAAGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010035 GO:0010038 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

WHEP-TRS tRNA-synt_2 tRNA_anti-codon

Protein Analysis

98

Amino Acids

11.34

Weight (kDa)

8.6

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70980 AT5G56680
fragaria_vesca	FvH4_3g17430
malus_domestica	MD01G1115900.v1.1 MD03G1251800.v1.1 MD05G1158600.v1.1 MD11G1273000.v1.1
prunus_persica	Prupe.4G154500_v2.0.a1 Prupe.4G154500_v2.0.a1 Prupe.7G068600_v2.0.a1 Prupe.7G068600_v2.0.a1 Prupe.7G068600_v2.0.a1 Prupe.7G068600_v2.0.a1 Prupe.7G068600_v2.0.a1
pyrus_communis	pycom03g19910 pycom05g15060 pycom11g24090
rosa_chinensis	RchiOBHm_Chr5g0028961
rosa_laevigata	RLG00000033131
rosa_multiflora	Rmu_co7984584.1_g000001 Rmu_sc0009042.1_g000005
rosa_roxburghii	Rroxscaffold_1G00050930
rosa_rugosa	Rorug05G0111900 Rorug05G0112000 Rorug05G0112000
rosa_samantha	Rh5AG204000 Rh5BG202300 Rh5CG223100 Rh5DG206100
rosa_wichuraiana	Rw5G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	163, 189
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	97
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	3 cut(s)	53, 164, 190
BlsI	GCNGC	3 cut(s)	54, 165, 191
Bme1390I	CCNGG	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	159, 235
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	142, 219
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseNI	ACTGG	2 cut(s)	159, 235
BseXI	GCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	131, 187
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	131, 187
Bsp143I	GATC	2 cut(s)	271, 286
BspACI	CCGC	2 cut(s)	163, 189
BspPI	GGATC	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	159, 235
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	271, 286
Bst4CI	ACNGT	2 cut(s)	116, 124
Bst6I	CTCTTC	1 cut(s)	274
BstF5I	GGATG	2 cut(s)	142, 219
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	2 cut(s)	274, 289
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	271, 286
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	35
BstSFI	CTRYAG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	142, 219
BtsIMutI	CAGTG	2 cut(s)	129, 228
CfoI	GCGC	1 cut(s)	168
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	5 cut(s)	55, 92, 102, 192, 235
CviKI_1	RGCY	5 cut(s)	55, 92, 102, 192, 235
DpnI	GATC	2 cut(s)	273, 288
DpnII	GATC	2 cut(s)	271, 286
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
FaeI	CATG	1 cut(s)	163
FaiI	YATR	5 cut(s)	99, 134, 161, 186, 221
FaqI	GGGAC	2 cut(s)	131, 187
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	53, 164, 190
FokI	GGATG	2 cut(s)	149, 226
Fsp4HI	GCNGC	3 cut(s)	53, 164, 190
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	3 cut(s)	53, 164, 190
HaeII	RGCGCY	1 cut(s)	169
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	78
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	116, 124
HpyCH4V	TGCA	2 cut(s)	24, 255
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	271, 286
LpnPI	CCDG	3 cut(s)	49, 140, 216
Lsp1109I	GCAGC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	267
MalI	GATC	2 cut(s)	273, 288
MboI	GATC	2 cut(s)	271, 286
MboII	GAAGA	2 cut(s)	122, 291
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	2 cut(s)	113, 269
MseI	TTAA	3 cut(s)	48, 180, 292
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	37
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	2 cut(s)	271, 286
NlaIII	CATG	1 cut(s)	163
NspI	RCATGY	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	54, 165, 191
PsuI	RGATCY	1 cut(s)	286
SaqAI	TTAA	3 cut(s)	48, 180, 292
SatI	GCNGC	3 cut(s)	53, 164, 190
Sau3AI	GATC	2 cut(s)	271, 286
ScrFI	CCNGG	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	97
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	163, 189
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	116, 124
TaqI	TCGA	1 cut(s)	274
TasI	AATT	1 cut(s)	44
TauI	GCSGC	2 cut(s)	166, 192
Tru1I	TTAA	3 cut(s)	48, 180, 292
Tru9I	TTAA	3 cut(s)	48, 180, 292
TscAI	CASTG	2 cut(s)	129, 235
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	2 cut(s)	129, 235
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.