Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005074

Physical Location & Seq

Genomic Coordinates Reverse (-)

27103505 .. 27106460

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCTGACGATTCCATGCCTTCAAGTGCCCAGCTTGCGAAAGTAACCTTAAGCAACGCTCCCTCTGTTCTAAAAGCAGAGTTTTCCGACAGAGTTCTCATCCGTTCCATTATTTCGCGACCTGATGGAGGGTCTGGGTTGGCCGGGCAGACGGTCCGGATTGGTGGGTGGGTGAAGACTGGTCGGAAGGCAGACAAGGATGCATTTGCATTCCTGGAGCTGAATGACGGGTCATGCGCAGGCAACCTTCAGGTGATTGTAAAAGCTGACAAGTATGACCTTGGGCAGCTTGTACAGACTGGTACTTGCCTGTCTGTGGATGGTGTGCTTAAGCTTCCCCCTGATGGGAAAAAGCAGAAGGTGGAGCTTGATGTTGAGAAGGTGGTCCATGTGGGTCTGGTTGACCCAGCTAAATACCCGTTGCCCAAGACCAGGCTCACCCTTGAGTTTTTGAGGGACCATCTTCATATGCGTTCCAGAACCAACACTATCTCTGCAGTTACTCGAATCAGAGATGCCTTGGCATTTGCAACCCACTCATTTTTCCATAAGCATGGATTTCTTTATGTGCAAACTCCAATTATCACCACCAGTGACTGTGAGGGTGCTGGTGAGATGTTTCAAGTCACAACCTTGATTAGTGGAGCTGAAAAGTTGGAAAAGATCGATCTGATTGAGAACCCTCCTCCATCAGAAGCAGACATAGAGGCTGCCAGGCTTAATGTCAAGGAGAGAGGAGATGATGTTGCTCAGCTGAAATCTGCTAAAGCAAGTAAGCAGGATATTAATGCTGCTGTGGCTGAGCTTAAAAAGGCAAAGGATAATGTCTTCAAGCTAGAGGAGCGATCTAAGCTTCAACCTGGTATCCCTCGAAAGGATGGGAAGATTGATTATACCCAAGATTTCTTCGCCCGTCAAGCCTTTTTGACTGTTTCTGGCCAATTACAAGTCGAATCTTATGCATGTGCTCTTAGTAGTGTCTATACATTTGGGCCTACTTTTCGAGCTGAGAACTCCCATACTTCAAGGCATTTGGCAGAGTTTTGGATGGTGGAGCCAGAAATTGCATTTGCAGAACTTGAGGATGATATGAACTGTGCAGAGGCATATGTGAAATTTCTGTGTCAGTGGTTACTTGATGAATGCAGGGAAGACATGGAATTTATGGCTGACAAAATTGATAAAACTTGCATTGATCGATCTAGCAATGGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010035 GO:0010038 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

WHEP-TRS tRNA-synt_2 tRNA_anti-codon

Protein Analysis

406

Amino Acids

44.74

Weight (kDa)

5.63

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70980 AT5G56680
fragaria_vesca	FvH4_3g17430
malus_domestica	MD01G1115900.v1.1 MD03G1251800.v1.1 MD05G1158600.v1.1 MD11G1273000.v1.1
prunus_persica	Prupe.4G154500_v2.0.a1 Prupe.4G154500_v2.0.a1 Prupe.7G068600_v2.0.a1 Prupe.7G068600_v2.0.a1 Prupe.7G068600_v2.0.a1 Prupe.7G068600_v2.0.a1 Prupe.7G068600_v2.0.a1
pyrus_communis	pycom03g19910 pycom05g15060 pycom11g24090
rosa_chinensis	RchiOBHm_Chr5g0028961
rosa_laevigata	RLG00000033131
rosa_multiflora	Rmu_co7984584.1_g000001 Rmu_sc0009042.1_g000005
rosa_roxburghii	Rroxscaffold_1G00050930
rosa_rugosa	Rorug05G0111900 Rorug05G0112000 Rorug05G0112000
rosa_samantha	Rh5AG204000 Rh5BG202300 Rh5CG223100 Rh5DG206100
rosa_wichuraiana	Rw5G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	238
AccII	CGCG	1 cut(s)	118
AccIII	TCCGGA	1 cut(s)	156
AcoI	YGGCCR	2 cut(s)	141, 937
AcsI	RAATTY	2 cut(s)	1115, 1160
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	2 cut(s)	294, 304
AfiI	CCNNNNNNNGG	6 cut(s)	128, 316, 344, 345, 432, 874
AflII	CTTAAG	2 cut(s)	49, 329
AgsI	TTSAA	5 cut(s)	24, 623, 832, 857, 1026
AjnI	CCWGG	4 cut(s)	213, 431, 713, 859
Alw21I	GWGCWC	1 cut(s)	970
AlwNI	CAGNNNCTG	1 cut(s)	597
Aor13HI	TCCGGA	1 cut(s)	156
AoxI	GGCC	3 cut(s)	141, 937, 992
ApeKI	GCWGC	3 cut(s)	286, 710, 791
ApoI	RAATTY	2 cut(s)	1115, 1160
AseI	ATTAAT	1 cut(s)	786
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	4 cut(s)	154, 385, 457, 992
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	5 cut(s)	184, 265, 430, 577, 623
AvaII	GGWCC	3 cut(s)	154, 385, 457
BaeGI	GKGCMC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	939
BbsI	GAAGAC	3 cut(s)	182, 820, 1158
Bbv12I	GWGCWC	1 cut(s)	970
BbvI	GCAGC	3 cut(s)	298, 697, 778
BccI	CCATC	7 cut(s)	119, 314, 338, 468, 697, 872, 1042
BcgI	CGANNNNNNTGC	2 cut(s)	941, 975
BciT130I	CCWGG	4 cut(s)	215, 433, 715, 861
BciVI	GTATCC	1 cut(s)	875
BcnI	CCSGG	1 cut(s)	145
BfaI	CTAG	2 cut(s)	836, 1203
BfmI	CTRYAG	1 cut(s)	495
BfrI	CTTAAG	2 cut(s)	49, 329
BfuI	GTATCC	1 cut(s)	875
BisI	GCNGC	3 cut(s)	287, 711, 792
BlpI	GCTNAGC	2 cut(s)	750, 801
BlsI	GCNGC	3 cut(s)	288, 712, 793
Bme1390I	CCNGG	5 cut(s)	145, 215, 433, 715, 861
Bme18I	GGWCC	3 cut(s)	154, 385, 457
BmgT120I	GGNCC	4 cut(s)	154, 385, 457, 992
BmiI	GGNNCC	2 cut(s)	458, 1056
BmrFI	CCNGG	5 cut(s)	145, 215, 433, 715, 861
BmsI	GCATC	2 cut(s)	190, 505
BpiI	GAAGAC	3 cut(s)	182, 820, 1158
BpmI	CTGGAG	1 cut(s)	236
Bpu1102I	GCTNAGC	2 cut(s)	750, 801
BpuEI	CTTGAG	2 cut(s)	464, 1100
BpuMI	CCSGG	1 cut(s)	145
Bsa29I	ATCGAT	2 cut(s)	666, 1198
BsaJI	CCNNGG	2 cut(s)	280, 519
BsaWI	WCCGGW	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	6 cut(s)	128, 316, 344, 345, 432, 874
Bse1I	ACTGG	3 cut(s)	184, 304, 591
Bse3DI	GCAATG	1 cut(s)	1213
BseAI	TCCGGA	1 cut(s)	156
BseBI	CCWGG	4 cut(s)	215, 433, 715, 861
BseCI	ATCGAT	2 cut(s)	666, 1198
BseDI	CCNNGG	2 cut(s)	280, 519
BseGI	GGATG	6 cut(s)	99, 205, 325, 883, 1053, 1090
BseLI	CCNNNNNNNGG	6 cut(s)	128, 316, 344, 345, 432, 874
BseMI	GCAATG	1 cut(s)	1213
BseMII	CTCAG	3 cut(s)	764, 792, 999
BseNI	ACTGG	3 cut(s)	184, 304, 591
BseRI	GAGGAG	3 cut(s)	675, 750, 854
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	298, 697, 778
BseYI	CCCAGC	2 cut(s)	30, 406
BsgI	GTGCAG	1 cut(s)	1119
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	3 cut(s)	143, 939, 994
BshVI	ATCGAT	2 cut(s)	666, 1198
BsiHKAI	GWGCWC	1 cut(s)	970
BsiSI	CCGG	2 cut(s)	144, 157
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	6 cut(s)	128, 316, 344, 345, 432, 874
BsmFI	GGGAC	1 cut(s)	470
BsmI	GAATGC	2 cut(s)	209, 1148
BsnI	GGCC	3 cut(s)	143, 939, 994
Bsp1286I	GDGCHC	2 cut(s)	31, 970
Bsp13I	TCCGGA	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	5 cut(s)	663, 667, 845, 1195, 1199
Bsp1720I	GCTNAGC	2 cut(s)	750, 801
Bsp68I	TCGCGA	1 cut(s)	118
BspANI	GGCC	3 cut(s)	143, 939, 994
BspCNI	CTCAG	3 cut(s)	763, 793, 1000
BspDI	ATCGAT	2 cut(s)	666, 1198
BspEI	TCCGGA	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	458, 1056
BspMAI	CTGCAG	1 cut(s)	499
BspTI	CTTAAG	2 cut(s)	49, 329
BsrDI	GCAATG	1 cut(s)	1213
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	3 cut(s)	184, 304, 591
BssECI	CCNNGG	2 cut(s)	280, 519
BssMI	GATC	5 cut(s)	663, 667, 845, 1195, 1199
BssT1I	CCWWGG	2 cut(s)	280, 519
Bst2UI	CCWGG	4 cut(s)	215, 433, 715, 861
Bst4CI	ACNGT	4 cut(s)	154, 599, 931, 1097
BstAFI	CTTAAG	2 cut(s)	49, 329
BstAPI	GCANNNNNTGC	1 cut(s)	1212
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	36, 241
BstDEI	CTNAG	5 cut(s)	750, 801, 849, 971, 1008
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	6 cut(s)	99, 205, 325, 883, 1053, 1090
BstFNI	CGCG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	5 cut(s)	666, 670, 848, 1198, 1202
BstMBI	GATC	5 cut(s)	663, 667, 845, 1195, 1199
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 797, 841, 850, 917, 1212
BstNI	CCWGG	4 cut(s)	215, 433, 715, 861
BstNSI	RCATGY	1 cut(s)	966
BstSCI	CCNGG	5 cut(s)	143, 213, 431, 713, 859
BstSFI	CTRYAG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	3 cut(s)	298, 697, 778
BstV2I	GAAGAC	3 cut(s)	182, 820, 1158
BstXI	CCANNNNNNTGG	1 cut(s)	554
Bsu15I	ATCGAT	2 cut(s)	666, 1198
BsuI	GTATCC	1 cut(s)	875
BsuRI	GGCC	3 cut(s)	143, 939, 994
BsuTUI	ATCGAT	2 cut(s)	666, 1198
BtsCI	GGATG	6 cut(s)	99, 205, 325, 883, 1053, 1090
BtsIMutI	CAGTG	2 cut(s)	598, 1133
BtuMI	TCGCGA	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	36, 241
CaiI	CAGNNNCTG	1 cut(s)	597
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	4 cut(s)	154, 385, 457, 992
ClaI	ATCGAT	2 cut(s)	666, 1198
CpoI	CGGWCCG	1 cut(s)	154
CsiI	ACCWGGT	1 cut(s)	859
Csp6I	GTAC	2 cut(s)	293, 303
CspI	CGGWCCG	1 cut(s)	154
CviAII	CATG	6 cut(s)	16, 234, 389, 554, 963, 1156
CviQI	GTAC	2 cut(s)	293, 303
DdeI	CTNAG	5 cut(s)	750, 801, 849, 971, 1008
DpnI	GATC	5 cut(s)	665, 669, 847, 1197, 1201
DpnII	GATC	5 cut(s)	663, 667, 845, 1195, 1199
EaeI	YGGCCR	2 cut(s)	141, 937
Eco130I	CCWWGG	2 cut(s)	280, 519
Eco47I	GGWCC	3 cut(s)	154, 385, 457
Eco57I	CTGAAG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoRII	CCWGG	4 cut(s)	213, 431, 713, 859
EcoT14I	CCWWGG	2 cut(s)	280, 519
EcoT22I	ATGCAT	2 cut(s)	205, 964
ErhI	CCWWGG	2 cut(s)	280, 519
FaeI	CATG	6 cut(s)	19, 237, 392, 557, 966, 1159
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	6 cut(s)	15, 233, 388, 553, 962, 1155
FauNDI	CATATG	2 cut(s)	468, 1108
Fnu4HI	GCNGC	3 cut(s)	287, 711, 792
FokI	GGATG	6 cut(s)	86, 212, 332, 890, 1060, 1097
Fsp4HI	GCNGC	3 cut(s)	287, 711, 792
FspBI	CTAG	2 cut(s)	836, 1203
FspI	TGCGCA	1 cut(s)	238
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	3 cut(s)	287, 711, 792
GsaI	CCCAGC	2 cut(s)	34, 410
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	143, 939, 994
HapII	CCGG	2 cut(s)	144, 157
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	6 cut(s)	19, 237, 392, 557, 966, 1159
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	2 cut(s)	332, 851
HinfI	GANTC	3 cut(s)	11, 507, 953
HpaII	CCGG	2 cut(s)	144, 157
HphI	GGTGA	5 cut(s)	184, 265, 430, 577, 623
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	5 cut(s)	88, 186, 512, 672, 694
Hpy188III	TCNNGA	3 cut(s)	117, 157, 477
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	5 cut(s)	30, 181, 257, 352, 373
HpyCH4III	ACNGT	4 cut(s)	154, 599, 931, 1097
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 797, 841, 850, 917, 1212
HpyF3I	CTNAG	5 cut(s)	750, 801, 849, 971, 1008
Hsp92II	CATG	6 cut(s)	19, 237, 392, 557, 966, 1159
HspAI	GCGC	1 cut(s)	237
Kpn2I	TCCGGA	1 cut(s)	156
Kzo9I	GATC	5 cut(s)	663, 667, 845, 1195, 1199
LmnI	GCTCC	6 cut(s)	64, 217, 364, 644, 841, 1054
Lsp1109I	GCAGC	3 cut(s)	298, 697, 778
LweI	GCATC	2 cut(s)	190, 505
MabI	ACCWGGT	1 cut(s)	859
MaeI	CTAG	2 cut(s)	836, 1203
MaeIII	GTNAC	5 cut(s)	43, 499, 593, 625, 1131
MalI	GATC	5 cut(s)	665, 669, 847, 1197, 1201
MboI	GATC	5 cut(s)	663, 667, 845, 1195, 1199
MboII	GAAGA	6 cut(s)	187, 455, 820, 895, 898, 1163
MhlI	GDGCHC	2 cut(s)	31, 970
MlsI	TGGCCA	1 cut(s)	939
MluCI	AATT	6 cut(s)	579, 941, 1062, 1115, 1160, 1176
MluNI	TGGCCA	1 cut(s)	939
MmeI	TCCRAC	3 cut(s)	111, 164, 636
Mox20I	TGGCCA	1 cut(s)	939
Mph1103I	ATGCAT	2 cut(s)	205, 964
MroI	TCCGGA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	939
MseI	TTAA	5 cut(s)	50, 330, 720, 786, 807
MslI	CAYNNNNRTG	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	939
MspA1I	CMGCKG	1 cut(s)	754
MspCI	CTTAAG	2 cut(s)	49, 329
MspI	CCGG	2 cut(s)	144, 157
MspR9I	CCNGG	5 cut(s)	145, 215, 433, 715, 861
Mva1269I	GAATGC	2 cut(s)	209, 1148
MvaI	CCWGG	4 cut(s)	215, 433, 715, 861
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	6 cut(s)	35, 797, 841, 850, 917, 1212
NciI	CCSGG	1 cut(s)	145
NdeI	CATATG	2 cut(s)	468, 1108
NdeII	GATC	5 cut(s)	663, 667, 845, 1195, 1199
NlaIII	CATG	6 cut(s)	19, 237, 392, 557, 966, 1159
NlaIV	GGNNCC	2 cut(s)	458, 1056
NmuCI	GTSAC	2 cut(s)	593, 625
NruI	TCGCGA	1 cut(s)	118
NsbI	TGCGCA	1 cut(s)	238
NsiI	ATGCAT	2 cut(s)	205, 964
NspI	RCATGY	1 cut(s)	966
PctI	GAATGC	2 cut(s)	209, 1148
PfeI	GAWTC	3 cut(s)	11, 507, 953
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	288, 712, 793
PshBI	ATTAAT	1 cut(s)	786
Psp6I	CCWGG	4 cut(s)	213, 431, 713, 859
PspFI	CCCAGC	2 cut(s)	30, 406
PspGI	CCWGG	4 cut(s)	213, 431, 713, 859
PspN4I	GGNNCC	2 cut(s)	458, 1056
PspPI	GGNCC	4 cut(s)	154, 385, 457, 992
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	597
PvuII	CAGCTG	1 cut(s)	754
RruI	TCGCGA	1 cut(s)	118
RsaI	GTAC	2 cut(s)	294, 304
RsaNI	GTAC	2 cut(s)	293, 303
RseI	CAYNNNNRTG	1 cut(s)	552
Rsr2I	CGGWCCG	1 cut(s)	154
RsrII	CGGWCCG	1 cut(s)	154
SaqAI	TTAA	5 cut(s)	50, 330, 720, 786, 807
SatI	GCNGC	3 cut(s)	287, 711, 792
Sau3AI	GATC	5 cut(s)	663, 667, 845, 1195, 1199
Sau96I	GGNCC	4 cut(s)	154, 385, 457, 992
ScrFI	CCNGG	5 cut(s)	145, 215, 433, 715, 861
SduI	GDGCHC	2 cut(s)	31, 970
SexAI	ACCWGGT	1 cut(s)	859
SfaNI	GCATC	2 cut(s)	190, 505
SfcI	CTRYAG	1 cut(s)	495
SinI	GGWCC	3 cut(s)	154, 385, 457
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	4 cut(s)	49, 329, 443, 1079
SmoI	CTYRAG	4 cut(s)	49, 329, 443, 1079
Sse9I	AATT	6 cut(s)	579, 941, 1062, 1115, 1160, 1176
SspMI	CTAG	2 cut(s)	836, 1203
StyD4I	CCNGG	5 cut(s)	143, 213, 431, 713, 859
StyI	CCWWGG	2 cut(s)	280, 519
TaaI	ACNGT	4 cut(s)	154, 599, 931, 1097
TaqI	TCGA	6 cut(s)	505, 666, 871, 951, 1003, 1198
TasI	AATT	6 cut(s)	579, 941, 1062, 1115, 1160, 1176
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	3 cut(s)	11, 507, 953
Tru1I	TTAA	5 cut(s)	50, 330, 720, 786, 807
Tru9I	TTAA	5 cut(s)	50, 330, 720, 786, 807
TscAI	CASTG	2 cut(s)	598, 1133
TseFI	GTSAC	2 cut(s)	593, 625
TseI	GCWGC	3 cut(s)	286, 710, 791
Tsp45I	GTSAC	2 cut(s)	593, 625
TspDTI	ATGAA	3 cut(s)	455, 1106, 1155
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	598, 1133
Vha464I	CTTAAG	2 cut(s)	49, 329
VpaK11BI	GGWCC	3 cut(s)	154, 385, 457
VspI	ATTAAT	1 cut(s)	786
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	2 cut(s)	1115, 1160
XceI	RCATGY	1 cut(s)	966
XspI	CTAG	2 cut(s)	836, 1203
Zsp2I	ATGCAT	2 cut(s)	205, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.