Rorug05G0112000

asparagine--tRNA ligase, cytoplasmic 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
9973294 .. 9978216
4923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0112000.1

Sequence Viewer

Length: 1050 bp
ATGGGCCACCGACAAAGCCGTTACCATTACGCGGGGGTCACAAAATTCCAATTCCATTTCCTCCGCTTTTCCTTCAACGTCCCAATGGCGGCCCAGGACGGAATCTGTACCGCCGGCGACGCCGCAGCCCGATCGGCTCTGATATTCGTCGGCACCGGCTGCTCCAGCTCCGTCCCCAACTTAATGTGCCTCATCCAGCCCTCCGATCCCCCCTGCCACGTCTGCTCTCAGGCCCTCTCCCTTCCCCCCGACCAAAACCCTAACTACAGGTGCAATACGTCGCTTCTGATCGATTATTGCCGGAGCGACGGCGAACACCGCTACGTGTTGATCGATGTGGGGAAGACGTTCAGGGAGCAAGTGCTGCGGTGGTTCACTCGCTATAAGATTCCTAGAGTTGATTCTATTATTTTGACTCATGAACATGCTGATGCAGTTCTTGGTCTGGATGACATACGTGCTGTACAGCCACATAGTTCCACAAATGACATTGAGCCTACTCCCATCTACCTAACTCAATTTGCAATGGAAAGCATTGCAGTGAAGTTCCCTTACTTGGTTCAGAAAAAACTTAAGGAAGGCCAAGAAGTGAGACGAGTTGCACAACTCGACTGGAAAATTATTGAGGACCATTGTGAAAAACCTTTTGTTGCATCAGGCCTACAATTTGTTCCTTTGCCAGTGATGCATGGGGAAGATTATGTCTGCTTGGGGTATCTATTTGGTGAACAGTGTCGAGTAGCTTATATATCTGACGTGTCACGTTTTCTTTCAAGCACAGAGCATTTGATTTCAAAAGATGGCGGTGGGCAGTTGGATCTTCTTATCTTGGACACATTATACAAGAATGGATCGCACAATGTTCACTTGTGCTTGCCACAGTCTCTAGAAGCTGTAAAGAGGATTTGTCCTAAACGGGCCCTATTAATTGGAATGACTCATCAGTTTGACCACCATAAGGACAATGAATCTCTTATGGAATGGTCTAAGCGGGAAGGGATACCTGTGCAGCTTGCGCATGATGGTTTGAGAGTCCCCTTAGACCTATAA

Protein Analysis

349

Amino Acids

39.42

Weight (kDa)

6.49

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Anti-Pycsar_Apyc1 PF23023 105 - 294 2.5e-06 Anti-Pycsar protein Apyc1
Lactamase_B_2 PF12706 107 - 311 7.5e-22 Beta-lactamase superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1017
AccB1I GGYRCC 1 cut(s) 152
AccII CGCG 1 cut(s) 32
AciI CCGC 9 cut(s) 32, 64, 89, 111, 123, 319, 367, 804, 991
AclWI GGATC 3 cut(s) 200, 825, 859
AcsI RAATTY 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 2 cut(s) 109, 465
AfiI CCNNNNNNNGG 4 cut(s) 31, 88, 556, 958
AflII CTTAAG 1 cut(s) 572
AflIII ACRYGT 2 cut(s) 324, 756
AgsI TTSAA 3 cut(s) 76, 774, 795
AjiI CACGTC 2 cut(s) 220, 757
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 4 cut(s) 168, 743, 893, 1012
AluI AGCT 4 cut(s) 168, 743, 893, 1012
Alw26I GTCTC 2 cut(s) 586, 888
AlwI GGATC 3 cut(s) 200, 825, 859
AoxI GGCC 6 cut(s) 4, 90, 231, 580, 658, 918
ApaI GGGCCC 1 cut(s) 922
ApeKI GCWGC 4 cut(s) 125, 159, 364, 1009
ApoI RAATTY 1 cut(s) 44
AseI ATTAAT 1 cut(s) 926
Asp700I GAANNNNTTC 1 cut(s) 347
AspLEI GCGC 1 cut(s) 1018
AspS9I GGNCC 6 cut(s) 4, 91, 232, 628, 918, 919
AsuHPI GGTGA 1 cut(s) 737
AvaII GGWCC 1 cut(s) 628
BaeGI GKGCMC 1 cut(s) 922
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 922
BarI GAAGNNNNNNTAC 2 cut(s) 536, 568
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 4 cut(s) 137, 146, 351, 1021
BccI CCATC 3 cut(s) 512, 794, 1016
BceAI ACGGC 2 cut(s) 3, 325
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BciT130I CCWGG 1 cut(s) 95
BciVI GTATCC 1 cut(s) 993
BcoDI GTCTC 2 cut(s) 586, 888
BfaI CTAG 2 cut(s) 393, 887
BfmI CTRYAG 1 cut(s) 265
BfrI CTTAAG 1 cut(s) 572
BfuI GTATCC 1 cut(s) 993
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 6 cut(s) 90, 123, 126, 160, 365, 1010
BlsI GCNGC 6 cut(s) 91, 124, 127, 161, 366, 1011
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 628
BmgBI CACGTC 2 cut(s) 220, 757
BmgT120I GGNCC 6 cut(s) 4, 91, 232, 628, 918, 919
BmiI GGNNCC 2 cut(s) 154, 920
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 3 cut(s) 421, 662, 675
BpiI GAAGAC 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 148
Bsa29I ATCGAT 2 cut(s) 291, 333
BsaAI YACGTR 2 cut(s) 325, 458
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 88, 556, 958
Bse118I RCCGGY 2 cut(s) 113, 155
Bse1I ACTGG 2 cut(s) 617, 680
Bse3DI GCAATG 2 cut(s) 531, 534
BseBI CCWGG 1 cut(s) 95
BseCI ATCGAT 2 cut(s) 291, 333
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 192, 454
BseLI CCNNNNNNNGG 4 cut(s) 31, 88, 556, 958
BseMI GCAATG 2 cut(s) 531, 534
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 617, 680
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 4 cut(s) 137, 146, 351, 1021
BsgI GTGCAG 1 cut(s) 1028
Bsh1236I CGCG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 6 cut(s) 6, 92, 233, 582, 660, 920
BshNI GGYRCC 1 cut(s) 152
BshVI ATCGAT 2 cut(s) 291, 333
BsiEI CGRYCG 1 cut(s) 134
BsiSI CCGG 3 cut(s) 114, 156, 301
BslFI GGGAC 3 cut(s) 65, 158, 1019
BslI CCNNNNNNNGG 4 cut(s) 31, 88, 556, 958
BsmAI GTCTC 2 cut(s) 586, 888
BsmBI CGTCTC 1 cut(s) 586
BsmFI GGGAC 3 cut(s) 65, 158, 1019
BsnI GGCC 6 cut(s) 6, 92, 233, 582, 660, 920
Bsp120I GGGCCC 1 cut(s) 918
Bsp1286I GDGCHC 1 cut(s) 922
Bsp1407I TGTACA 1 cut(s) 463
Bsp143I GATC 6 cut(s) 131, 205, 288, 330, 817, 851
BspACI CCGC 9 cut(s) 32, 64, 89, 111, 123, 319, 367, 804, 991
BspANI GGCC 6 cut(s) 6, 92, 233, 582, 660, 920
BspCNI CTCAG 1 cut(s) 241
BspDI ATCGAT 2 cut(s) 291, 333
BspFNI CGCG 1 cut(s) 32
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 154, 920
BspPI GGATC 3 cut(s) 200, 825, 859
BspT107I GGYRCC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 572
BsrDI GCAATG 2 cut(s) 531, 534
BsrFI RCCGGY 2 cut(s) 113, 155
BsrGI TGTACA 1 cut(s) 463
BsrI ACTGG 2 cut(s) 617, 680
BssAI RCCGGY 2 cut(s) 113, 155
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 6 cut(s) 131, 205, 288, 330, 817, 851
BssNI GRCGYC 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 2 cut(s) 732, 882
BstACI GRCGYC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 572
BstAPI GCANNNNNTGC 2 cut(s) 159, 364
BstAUI TGTACA 1 cut(s) 463
BstBAI YACGTR 2 cut(s) 325, 458
BstC8I GCNNGC 3 cut(s) 115, 875, 1014
BstDEI CTNAG 3 cut(s) 228, 987, 1039
BstF5I GGATG 2 cut(s) 192, 454
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 1018
BstKTI GATC 6 cut(s) 134, 208, 291, 333, 820, 854
BstMAI GTCTC 2 cut(s) 586, 888
BstMBI GATC 6 cut(s) 131, 205, 288, 330, 817, 851
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 9 cut(s) 119, 134, 159, 165, 222, 318, 364, 685, 1015
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 922
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 4 cut(s) 137, 146, 351, 1021
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 817
BstYI RGATCY 1 cut(s) 817
Bsu15I ATCGAT 2 cut(s) 291, 333
BsuI GTATCC 1 cut(s) 993
BsuRI GGCC 6 cut(s) 6, 92, 233, 582, 660, 920
BsuTUI ATCGAT 2 cut(s) 291, 333
BtrI CACGTC 2 cut(s) 220, 757
BtsCI GGATG 2 cut(s) 192, 454
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 546, 687, 737
Cac8I GCNNGC 3 cut(s) 115, 875, 1014
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 1018
Cfr10I RCCGGY 2 cut(s) 113, 155
Cfr13I GGNCC 6 cut(s) 4, 91, 232, 628, 918, 919
ClaI ATCGAT 2 cut(s) 291, 333
CseI GACGC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 108, 464
CviAII CATG 4 cut(s) 419, 425, 689, 1019
CviQI GTAC 2 cut(s) 108, 464
DdeI CTNAG 3 cut(s) 228, 987, 1039
DpnI GATC 6 cut(s) 133, 207, 290, 332, 819, 853
DpnII GATC 6 cut(s) 131, 205, 288, 330, 817, 851
Eco147I AGGCCT 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 922
Eco47I GGWCC 1 cut(s) 628
EcoO109I RGGNCCY 2 cut(s) 232, 919
EcoRII CCWGG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 922
Esp3I CGTCTC 1 cut(s) 586
FaeI CATG 4 cut(s) 422, 428, 692, 1022
FaqI GGGAC 3 cut(s) 65, 158, 1019
FatI CATG 4 cut(s) 418, 424, 688, 1018
FauI CCCGC 2 cut(s) 25, 984
Fnu4HI GCNGC 6 cut(s) 90, 123, 126, 160, 365, 1010
FokI GGATG 2 cut(s) 179, 461
FriOI GRGCYC 1 cut(s) 922
Fsp4HI GCNGC 6 cut(s) 90, 123, 126, 160, 365, 1010
FspBI CTAG 2 cut(s) 393, 887
FspI TGCGCA 1 cut(s) 1017
GlaI GCGC 1 cut(s) 1017
GluI GCNGC 6 cut(s) 90, 123, 126, 160, 365, 1010
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 6 cut(s) 6, 92, 233, 582, 660, 920
HapII CCGG 3 cut(s) 114, 156, 301
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 1018
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 4 cut(s) 422, 428, 692, 1022
Hin6I GCGC 1 cut(s) 1016
HinP1I GCGC 1 cut(s) 1016
HinfI GANTC 7 cut(s) 102, 388, 401, 415, 937, 968, 1032
HpaII CCGG 3 cut(s) 114, 156, 301
HphI GGTGA 1 cut(s) 737
Hpy166II GTNNAC 3 cut(s) 375, 728, 865
Hpy188I TCNGA 5 cut(s) 141, 205, 288, 564, 754
Hpy188III TCNNGA 3 cut(s) 419, 446, 887
Hpy8I GTNNAC 3 cut(s) 375, 728, 865
Hpy99I CGWCG 4 cut(s) 122, 152, 283, 311
HpyAV CCTTC 4 cut(s) 82, 251, 572, 989
HpyCH4III ACNGT 2 cut(s) 732, 882
HpyCH4IV ACGT 8 cut(s) 78, 219, 278, 324, 347, 457, 756, 763
HpyCH4V TGCA 8 cut(s) 273, 434, 524, 539, 602, 653, 688, 1009
HpyF10VI GCNNNNNNNGC 9 cut(s) 119, 134, 159, 165, 222, 318, 364, 685, 1015
HpyF3I CTNAG 3 cut(s) 228, 987, 1039
HpySE526I ACGT 8 cut(s) 78, 219, 278, 324, 347, 457, 756, 763
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 4 cut(s) 422, 428, 692, 1022
HspAI GCGC 1 cut(s) 1016
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 6 cut(s) 131, 205, 288, 330, 817, 851
LmnI GCTCC 4 cut(s) 167, 173, 303, 355
Lsp1109I GCAGC 4 cut(s) 137, 146, 351, 1021
LweI GCATC 3 cut(s) 421, 662, 675
MaeI CTAG 2 cut(s) 393, 887
MaeII ACGT 8 cut(s) 78, 219, 278, 324, 347, 457, 756, 763
MaeIII GTNAC 3 cut(s) 20, 37, 759
MalI GATC 6 cut(s) 133, 207, 290, 332, 819, 853
MboI GATC 6 cut(s) 131, 205, 288, 330, 817, 851
MboII GAAGA 3 cut(s) 355, 707, 812
MflI RGATCY 1 cut(s) 817
MhlI GDGCHC 1 cut(s) 922
MluCI AATT 6 cut(s) 44, 50, 518, 618, 665, 927
MlyI GAGTC 3 cut(s) 409, 931, 1041
MmeI TCCRAC 1 cut(s) 795
MnlI CCTC 6 cut(s) 71, 200, 211, 245, 619, 894
Mph1103I ATGCAT 1 cut(s) 690
MreI CGCCGGCG 1 cut(s) 113
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 3 cut(s) 182, 573, 926
MslI CAYNNNNRTG 3 cut(s) 423, 429, 539
MspCI CTTAAG 1 cut(s) 572
MspI CCGG 3 cut(s) 114, 156, 301
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 9 cut(s) 119, 134, 159, 165, 222, 318, 364, 685, 1015
NaeI GCCGGC 1 cut(s) 115
NdeII GATC 6 cut(s) 131, 205, 288, 330, 817, 851
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 4 cut(s) 422, 428, 692, 1022
NlaIV GGNNCC 2 cut(s) 154, 920
NmuCI GTSAC 2 cut(s) 37, 759
NsbI TGCGCA 1 cut(s) 1017
NsiI ATGCAT 1 cut(s) 690
NspI RCATGY 1 cut(s) 428
PagI TCATGA 1 cut(s) 418
PceI AGGCCT 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 4 cut(s) 102, 388, 401, 968
PkrI GCNGC 6 cut(s) 91, 124, 127, 161, 366, 1011
Ple19I CGATCG 1 cut(s) 134
PleI GAGTC 3 cut(s) 409, 931, 1040
PpsI GAGTC 3 cut(s) 409, 931, 1040
Ppu21I YACGTR 2 cut(s) 325, 458
PshBI ATTAAT 1 cut(s) 926
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 154, 920
PspOMI GGGCCC 1 cut(s) 918
PspPI GGNCC 6 cut(s) 4, 91, 232, 628, 918, 919
PsuI RGATCY 1 cut(s) 817
PvuI CGATCG 1 cut(s) 134
RsaI GTAC 2 cut(s) 109, 465
RsaNI GTAC 2 cut(s) 108, 464
RseI CAYNNNNRTG 3 cut(s) 423, 429, 539
SaqAI TTAA 3 cut(s) 182, 573, 926
SatI GCNGC 6 cut(s) 90, 123, 126, 160, 365, 1010
Sau3AI GATC 6 cut(s) 131, 205, 288, 330, 817, 851
Sau96I GGNCC 6 cut(s) 4, 91, 232, 628, 918, 919
SchI GAGTC 3 cut(s) 409, 931, 1041
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 922
SfaNI GCATC 3 cut(s) 421, 662, 675
SfcI CTRYAG 1 cut(s) 265
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 1 cut(s) 628
SmiMI CAYNNNNRTG 3 cut(s) 423, 429, 539
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 6 cut(s) 44, 50, 518, 618, 665, 927
SseBI AGGCCT 1 cut(s) 660
SsiI CCGC 9 cut(s) 32, 64, 89, 111, 123, 319, 367, 804, 991
SspMI CTAG 2 cut(s) 393, 887
StuI AGGCCT 1 cut(s) 660
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 732, 882
TaiI ACGT 8 cut(s) 81, 222, 281, 327, 350, 460, 759, 766
TaqI TCGA 4 cut(s) 291, 333, 609, 736
TasI AATT 6 cut(s) 44, 50, 518, 618, 665, 927
TatI WGTACW 1 cut(s) 463
TauI GCSGC 2 cut(s) 92, 125
TfiI GAWTC 4 cut(s) 102, 388, 401, 968
Tru1I TTAA 3 cut(s) 182, 573, 926
Tru9I TTAA 3 cut(s) 182, 573, 926
TscAI CASTG 3 cut(s) 546, 687, 737
TseFI GTSAC 2 cut(s) 37, 759
TseI GCWGC 4 cut(s) 125, 159, 364, 1009
Tsp45I GTSAC 2 cut(s) 37, 759
TspDTI ATGAA 2 cut(s) 435, 981
TspGWI ACGGA 2 cut(s) 114, 160
TspRI CASTG 3 cut(s) 546, 687, 737
Vha464I CTTAAG 1 cut(s) 572
VpaK11BI GGWCC 1 cut(s) 628
VspI ATTAAT 1 cut(s) 926
XapI RAATTY 1 cut(s) 44
XbaI TCTAGA 1 cut(s) 886
XceI RCATGY 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 2 cut(s) 393, 887
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.