Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Reverse (-)

21367193 .. 21369061

Gene Structure 1869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGTTAGAGCTCCTTGCTGTGCGAAGATGGGGTTGAAGAAAGGGATTTGGACTCCAGAAGAAGATCACATACTTGTCACTTACATTGAGCAGCATGGCCATGGAAACTGGAGATCTCTCCCAAAACTAGCTGGTTTGTCAAGGTGTGGAAAAAGTTGTAGACTCAGATGGACAAATTACTTGAGGCCAGATATCAAAAGAGGAAATTTTAGCAAGGAAGAAGAAGACGAAATCATCAACTTACATCAAATATTGGGAAATAGATGGTCACAAATCGCAGCGAGATTGCCTGGTCGCACAGACAATGAAATAAAAAATGTATGGCACACCCATTTGAAAAAAAAGCTGAAATCGAACAATCCATATTTCTACCCTATCAAAATGGAGCAAGAGCTAGACCCCGTTGCTGATTCTTCACATTGTGCAAAATCTGAGAGCTTGGATTGTCGGCCCGTTTCGCCGTCTCAATGTACTTCAAGTGGCACATCATCCGTCACGACCGGCGACAACAACAACAATAACTATGCATGCATGAAATTTGATGATTACCAAACAACTTTACCGGTGGCGGATGATAGTTTTTGGTCGGAAGTCTTGTCAGCTGGGAATTCTGATGAGATTGTGAATGAGTTTCAGGCATTTGGTGGTGATCCACGAGTGAATGTAGGACCTACTGATGGTGGTTTTAGTTTAGATATGTACAATGACAACAACATGGATTTTTGGTTTAATAATTTCCTGGGAGCTGAGGAAATTCCGGAATTGTTAGAATTTGATATGCCAATAAGGAAGGCTGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

268

Amino Acids

30.27

Weight (kDa)

5.42

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	4.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	6.5e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 120	1.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AccIII	TCCGGA	1 cut(s)	757
AciI	CCGC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	644
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	5 cut(s)	205, 536, 607, 753, 770
AdeI	CACNNNGTG	1 cut(s)	422
AfaI	GTAC	2 cut(s)	472, 701
AfiI	CCNNNNNNNGG	1 cut(s)	677
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	3 cut(s)	37, 337, 477
AjnI	CCWGG	2 cut(s)	289, 738
AluBI	AGCT	7 cut(s)	11, 131, 346, 394, 438, 602, 746
AluI	AGCT	7 cut(s)	11, 131, 346, 394, 438, 602, 746
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	644
Aor13HI	TCCGGA	1 cut(s)	757
AoxI	GGCC	3 cut(s)	97, 185, 449
ApeKI	GCWGC	2 cut(s)	91, 278
ApoI	RAATTY	5 cut(s)	205, 536, 607, 753, 770
AsiGI	ACCGGT	1 cut(s)	562
AspS9I	GGNCC	2 cut(s)	450, 668
AsuHPI	GGTGA	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	668
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
BauI	CACGAG	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	13
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	2 cut(s)	103, 290
BccI	CCATC	4 cut(s)	22, 162, 258, 671
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	2 cut(s)	291, 740
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	2 cut(s)	128, 395
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	2 cut(s)	92, 279
BlsI	GCNGC	2 cut(s)	93, 280
Bme1390I	CCNGG	2 cut(s)	291, 740
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	450, 668
BmrFI	CCNGG	2 cut(s)	291, 740
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	2 cut(s)	39, 130
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	100, 739
BsaWI	WCCGGW	2 cut(s)	562, 757
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse118I	RCCGGY	2 cut(s)	500, 562
Bse1I	ACTGG	1 cut(s)	113
BseAI	TCCGGA	1 cut(s)	757
BseBI	CCWGG	2 cut(s)	291, 740
BseDI	CCNNGG	2 cut(s)	100, 739
BseGI	GGATG	2 cut(s)	488, 577
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMII	CTCAG	3 cut(s)	178, 423, 738
BseNI	ACTGG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	103, 290
BseYI	CCCAGC	1 cut(s)	602
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	3 cut(s)	99, 187, 451
BshTI	ACCGGT	1 cut(s)	562
BsiEI	CGRYCG	1 cut(s)	501
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	3 cut(s)	501, 563, 758
BslI	CCNNNNNNNGG	1 cut(s)	677
BsmAI	GTCTC	1 cut(s)	468
BsmBI	CGTCTC	1 cut(s)	468
BsnI	GGCC	3 cut(s)	99, 187, 451
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp13I	TCCGGA	1 cut(s)	757
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	3 cut(s)	64, 113, 649
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	3 cut(s)	99, 187, 451
BspCNI	CTCAG	3 cut(s)	177, 424, 739
BspEI	TCCGGA	1 cut(s)	757
BspPI	GGATC	1 cut(s)	644
BsrFI	RCCGGY	2 cut(s)	500, 562
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	113
BssAI	RCCGGY	2 cut(s)	500, 562
BssECI	CCNNGG	2 cut(s)	100, 739
BssMI	GATC	3 cut(s)	64, 113, 649
BssSI	CACGAG	1 cut(s)	654
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	654
Bst2UI	CCWGG	2 cut(s)	291, 740
BstAUI	TGTACA	1 cut(s)	699
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	3 cut(s)	164, 432, 747
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	488, 577
BstKTI	GATC	3 cut(s)	67, 116, 652
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	3 cut(s)	64, 113, 649
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	2 cut(s)	291, 740
BstNSI	RCATGY	1 cut(s)	531
BstSCI	CCNGG	2 cut(s)	289, 738
BstV1I	GCAGC	2 cut(s)	103, 290
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BsuRI	GGCC	3 cut(s)	99, 187, 451
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	488, 577
Cac8I	GCNNGC	1 cut(s)	529
Cfr10I	RCCGGY	2 cut(s)	500, 562
Cfr13I	GGNCC	2 cut(s)	450, 668
Csp6I	GTAC	2 cut(s)	471, 700
CspAI	ACCGGT	1 cut(s)	562
CviAII	CATG	5 cut(s)	95, 101, 528, 532, 715
CviQI	GTAC	2 cut(s)	471, 700
DdeI	CTNAG	3 cut(s)	164, 432, 747
DpnI	GATC	3 cut(s)	66, 115, 651
DpnII	GATC	3 cut(s)	64, 113, 649
DraIII	CACNNNGTG	1 cut(s)	422
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	584
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	668
Eco53kI	GAGCTC	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	289, 738
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	100
EcoT22I	ATGCAT	2 cut(s)	529, 533
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	468
FaeI	CATG	5 cut(s)	98, 104, 531, 535, 718
FatI	CATG	5 cut(s)	94, 100, 527, 531, 714
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	92, 279
FokI	GGATG	2 cut(s)	475, 584
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	92, 279
FspBI	CTAG	2 cut(s)	128, 395
GluI	GCNGC	2 cut(s)	92, 279
GsaI	CCCAGC	1 cut(s)	606
GsuI	CTGGAG	2 cut(s)	39, 130
HaeIII	GGCC	3 cut(s)	99, 187, 451
HapII	CCGG	3 cut(s)	501, 563, 758
Hin1II	CATG	5 cut(s)	98, 104, 531, 535, 718
HinfI	GANTC	3 cut(s)	52, 162, 410
HpaII	CCGG	3 cut(s)	501, 563, 758
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	4 cut(s)	167, 433, 589, 613
Hpy188III	TCNNGA	3 cut(s)	56, 496, 758
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	784
HpyCH4V	TGCA	3 cut(s)	425, 527, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	3 cut(s)	164, 432, 747
Hsp92II	CATG	5 cut(s)	98, 104, 531, 535, 718
Kpn2I	TCCGGA	1 cut(s)	757
Kzo9I	GATC	3 cut(s)	64, 113, 649
LmnI	GCTCC	3 cut(s)	16, 385, 743
Lsp1109I	GCAGC	2 cut(s)	103, 290
MaeI	CTAG	2 cut(s)	128, 395
MaeIII	GTNAC	3 cut(s)	76, 267, 493
MalI	GATC	3 cut(s)	66, 115, 651
MboI	GATC	3 cut(s)	64, 113, 649
MboII	GAAGA	8 cut(s)	37, 49, 71, 74, 230, 233, 236, 405
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	8 cut(s)	175, 205, 536, 607, 733, 753, 761, 770
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	46, 156
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	3 cut(s)	177, 194, 742
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	2 cut(s)	529, 533
MroI	TCCGGA	1 cut(s)	757
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	729
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	3 cut(s)	501, 563, 758
MspR9I	CCNGG	2 cut(s)	291, 740
MvaI	CCWGG	2 cut(s)	291, 740
MwoI	GCNNNNNNNGC	1 cut(s)	457
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	3 cut(s)	64, 113, 649
NlaIII	CATG	5 cut(s)	98, 104, 531, 535, 718
NmuCI	GTSAC	3 cut(s)	76, 267, 493
NsiI	ATGCAT	2 cut(s)	529, 533
NspI	RCATGY	1 cut(s)	531
PaeI	GCATGC	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	410
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	93, 280
PleI	GAGTC	2 cut(s)	46, 156
PpsI	GAGTC	2 cut(s)	46, 156
PpuMI	RGGWCCY	1 cut(s)	668
Psp124BI	GAGCTC	1 cut(s)	13
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	2 cut(s)	289, 738
PspFI	CCCAGC	1 cut(s)	602
PspGI	CCWGG	2 cut(s)	289, 738
PspPI	GGNCC	2 cut(s)	450, 668
PspPPI	RGGWCCY	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	2 cut(s)	472, 701
RsaNI	GTAC	2 cut(s)	471, 700
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	729
SatI	GCNGC	2 cut(s)	92, 279
Sau3AI	GATC	3 cut(s)	64, 113, 649
Sau96I	GGNCC	2 cut(s)	450, 668
SchI	GAGTC	2 cut(s)	46, 156
ScrFI	CCNGG	2 cut(s)	291, 740
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	9 cut(s)	13, 133, 146, 348, 396, 440, 604, 673, 748
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SphI	GCATGC	1 cut(s)	531
Sse9I	AATT	8 cut(s)	175, 205, 536, 607, 733, 753, 761, 770
SsiI	CCGC	1 cut(s)	569
SspI	AATATT	1 cut(s)	252
SspMI	CTAG	2 cut(s)	128, 395
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	289, 738
StyI	CCWWGG	1 cut(s)	100
TaqI	TCGA	1 cut(s)	353
TasI	AATT	8 cut(s)	175, 205, 536, 607, 733, 753, 761, 770
TatI	WGTACW	2 cut(s)	470, 699
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TseFI	GTSAC	3 cut(s)	76, 267, 493
TseI	GCWGC	2 cut(s)	91, 278
Tsp45I	GTSAC	3 cut(s)	76, 267, 493
TspDTI	ATGAA	2 cut(s)	321, 548
TspGWI	ACGGA	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	668
XapI	RAATTY	5 cut(s)	205, 536, 607, 753, 770
XceI	RCATGY	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	2 cut(s)	128, 395
Zsp2I	ATGCAT	2 cut(s)	529, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.