Agenet domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 187, 1371 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 326, 1560 |
| AccI | GTMKAC | 1 cut(s) | 1497 |
| AccII | CGCG | 1 cut(s) | 60 |
| AciI | CCGC | 4 cut(s) | 60, 838, 1774, 1905 |
| AclWI | GGATC | 2 cut(s) | 944, 1282 |
| AcsI | RAATTY | 4 cut(s) | 911, 1018, 1768, 1916 |
| AcuI | CTGAAG | 2 cut(s) | 461, 805 |
| AdeI | CACNNNGTG | 2 cut(s) | 48, 151 |
| AfaI | GTAC | 3 cut(s) | 214, 905, 1789 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 326, 607, 1510, 1537, 1560 |
| AflII | CTTAAG | 1 cut(s) | 968 |
| AflIII | ACRYGT | 1 cut(s) | 549 |
| AgsI | TTSAA | 6 cut(s) | 88, 404, 1072, 1247, 1703, 1818 |
| AjnI | CCWGG | 1 cut(s) | 419 |
| AleI | CACNNNNGTG | 1 cut(s) | 1889 |
| AluBI | AGCT | 6 cut(s) | 439, 755, 1234, 1519, 1645, 1697 |
| AluI | AGCT | 6 cut(s) | 439, 755, 1234, 1519, 1645, 1697 |
| Alw21I | GWGCWC | 2 cut(s) | 42, 340 |
| Alw26I | GTCTC | 3 cut(s) | 173, 268, 1379 |
| AlwI | GGATC | 2 cut(s) | 944, 1282 |
| Ama87I | CYCGRG | 4 cut(s) | 265, 606, 1286, 1747 |
| ApeKI | GCWGC | 4 cut(s) | 984, 1316, 1780, 1895 |
| ApoI | RAATTY | 4 cut(s) | 911, 1018, 1768, 1916 |
| AseI | ATTAAT | 1 cut(s) | 204 |
| AspA2I | CCTAGG | 1 cut(s) | 532 |
| AspLEI | GCGC | 1 cut(s) | 60 |
| AspS9I | GGNCC | 4 cut(s) | 73, 701, 941, 1297 |
| AsuC2I | CCSGG | 1 cut(s) | 1506 |
| AsuHPI | GGTGA | 8 cut(s) | 590, 688, 973, 1003, 1520, 1710, 1768, 1777 |
| AvaI | CYCGRG | 4 cut(s) | 265, 606, 1286, 1747 |
| AvaII | GGWCC | 4 cut(s) | 73, 701, 941, 1297 |
| AvrII | CCTAGG | 1 cut(s) | 532 |
| BanII | GRGCYC | 1 cut(s) | 1125 |
| BauI | CACGAG | 1 cut(s) | 1899 |
| BbsI | GAAGAC | 3 cut(s) | 552, 564, 1806 |
| Bbv12I | GWGCWC | 2 cut(s) | 42, 340 |
| BbvI | GCAGC | 4 cut(s) | 996, 1303, 1792, 1882 |
| BccI | CCATC | 4 cut(s) | 692, 1265, 1430, 1569 |
| BceAI | ACGGC | 2 cut(s) | 51, 1840 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 846, 880 |
| BciT130I | CCWGG | 1 cut(s) | 421 |
| BclI | TGATCA | 2 cut(s) | 358, 678 |
| BcnI | CCSGG | 1 cut(s) | 1506 |
| BcoDI | GTCTC | 3 cut(s) | 173, 268, 1379 |
| BfaI | CTAG | 5 cut(s) | 533, 645, 1331, 1635, 1662 |
| BfmI | CTRYAG | 2 cut(s) | 1386, 1461 |
| BfrI | CTTAAG | 1 cut(s) | 968 |
| BisI | GCNGC | 4 cut(s) | 985, 1317, 1781, 1896 |
| BlnI | CCTAGG | 1 cut(s) | 532 |
| BlsI | GCNGC | 4 cut(s) | 986, 1318, 1782, 1897 |
| Bme1390I | CCNGG | 2 cut(s) | 421, 1506 |
| Bme18I | GGWCC | 4 cut(s) | 73, 701, 941, 1297 |
| BmeT110I | CYCGRG | 4 cut(s) | 265, 606, 1286, 1747 |
| BmgT120I | GGNCC | 4 cut(s) | 73, 701, 941, 1297 |
| BmiI | GGNNCC | 3 cut(s) | 369, 1298, 1299 |
| BmrFI | CCNGG | 2 cut(s) | 421, 1506 |
| BmrI | ACTGGG | 1 cut(s) | 1570 |
| BmsI | GCATC | 3 cut(s) | 104, 1331, 1411 |
| BmuI | ACTGGG | 1 cut(s) | 1570 |
| BpiI | GAAGAC | 3 cut(s) | 552, 564, 1806 |
| BpmI | CTGGAG | 1 cut(s) | 1305 |
| Bpu10I | CCTNAGC | 2 cut(s) | 723, 1345 |
| BpuMI | CCSGG | 1 cut(s) | 1506 |
| BsaAI | YACGTR | 2 cut(s) | 541, 1615 |
| BsaI | GGTCTC | 1 cut(s) | 268 |
| BsaJI | CCNNGG | 6 cut(s) | 192, 258, 371, 532, 1095, 1504 |
| BsaWI | WCCGGW | 1 cut(s) | 1735 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1401, 1431 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 326, 607, 1510, 1537, 1560 |
| Bse1I | ACTGG | 3 cut(s) | 1133, 1565, 1791 |
| Bse3DI | GCAATG | 1 cut(s) | 1834 |
| BseBI | CCWGG | 1 cut(s) | 421 |
| BseDI | CCNNGG | 6 cut(s) | 192, 258, 371, 532, 1095, 1504 |
| BseGI | GGATG | 5 cut(s) | 172, 625, 1199, 1546, 1744 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 326, 607, 1510, 1537, 1560 |
| BseMI | GCAATG | 1 cut(s) | 1834 |
| BseMII | CTCAG | 5 cut(s) | 120, 678, 1020, 1241, 1359 |
| BseNI | ACTGG | 3 cut(s) | 1133, 1565, 1791 |
| BseRI | GAGGAG | 4 cut(s) | 50, 148, 1304, 1526 |
| BseXI | GCAGC | 4 cut(s) | 996, 1303, 1792, 1882 |
| Bsh1236I | CGCG | 1 cut(s) | 60 |
| BsiHKAI | GWGCWC | 2 cut(s) | 42, 340 |
| BsiHKCI | CYCGRG | 4 cut(s) | 265, 606, 1286, 1747 |
| BsiSI | CCGG | 2 cut(s) | 1506, 1736 |
| BslFI | GGGAC | 3 cut(s) | 139, 1014, 1283 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 326, 607, 1510, 1537, 1560 |
| BsmAI | GTCTC | 3 cut(s) | 173, 268, 1379 |
| BsmBI | CGTCTC | 1 cut(s) | 1379 |
| BsmFI | GGGAC | 3 cut(s) | 139, 1014, 1283 |
| Bso31I | GGTCTC | 1 cut(s) | 268 |
| BsoBI | CYCGRG | 4 cut(s) | 265, 606, 1286, 1747 |
| Bsp1286I | GDGCHC | 3 cut(s) | 42, 340, 1125 |
| Bsp143I | GATC | 4 cut(s) | 358, 678, 949, 1274 |
| Bsp19I | CCATGG | 1 cut(s) | 1095 |
| BspACI | CCGC | 4 cut(s) | 60, 838, 1774, 1905 |
| BspCNI | CTCAG | 5 cut(s) | 121, 679, 1021, 1240, 1358 |
| BspFNI | CGCG | 1 cut(s) | 60 |
| BspHI | TCATGA | 1 cut(s) | 919 |
| BspLI | GGNNCC | 3 cut(s) | 369, 1298, 1299 |
| BspMAI | CTGCAG | 1 cut(s) | 1465 |
| BspPI | GGATC | 2 cut(s) | 944, 1282 |
| BspTI | CTTAAG | 1 cut(s) | 968 |
| BspTNI | GGTCTC | 1 cut(s) | 268 |
| BsrDI | GCAATG | 1 cut(s) | 1834 |
| BsrI | ACTGG | 3 cut(s) | 1133, 1565, 1791 |
| BssECI | CCNNGG | 6 cut(s) | 192, 258, 371, 532, 1095, 1504 |
| BssMI | GATC | 4 cut(s) | 358, 678, 949, 1274 |
| BssSI | CACGAG | 1 cut(s) | 1899 |
| BssT1I | CCWWGG | 4 cut(s) | 192, 258, 532, 1095 |
| Bst2BI | CACGAG | 1 cut(s) | 1899 |
| Bst2UI | CCWGG | 1 cut(s) | 421 |
| Bst4CI | ACNGT | 2 cut(s) | 367, 712 |
| Bst6I | CTCTTC | 3 cut(s) | 226, 927, 1698 |
| BstAFI | CTTAAG | 1 cut(s) | 968 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1341, 1421 |
| BstBAI | YACGTR | 2 cut(s) | 541, 1615 |
| BstDEI | CTNAG | 6 cut(s) | 129, 687, 723, 1029, 1227, 1345 |
| BstDSI | CCRYGG | 1 cut(s) | 1095 |
| BstF5I | GGATG | 5 cut(s) | 172, 625, 1199, 1546, 1744 |
| BstFNI | CGCG | 1 cut(s) | 60 |
| BstHHI | GCGC | 1 cut(s) | 60 |
| BstKTI | GATC | 4 cut(s) | 361, 681, 952, 1277 |
| BstMAI | GTCTC | 3 cut(s) | 173, 268, 1379 |
| BstMBI | GATC | 4 cut(s) | 358, 678, 949, 1274 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 752, 1341, 1350, 1421, 1780, 1880 |
| BstNI | CCWGG | 1 cut(s) | 421 |
| BstNSI | RCATGY | 1 cut(s) | 553 |
| BstSCI | CCNGG | 2 cut(s) | 419, 1504 |
| BstSFI | CTRYAG | 2 cut(s) | 1386, 1461 |
| BstSNI | TACGTA | 1 cut(s) | 1615 |
| BstUI | CGCG | 1 cut(s) | 60 |
| BstV1I | GCAGC | 4 cut(s) | 996, 1303, 1792, 1882 |
| BstV2I | GAAGAC | 3 cut(s) | 552, 564, 1806 |
| BstX2I | RGATCY | 1 cut(s) | 1274 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1891 |
| BstYI | RGATCY | 1 cut(s) | 1274 |
| BtgI | CCRYGG | 1 cut(s) | 1095 |
| BtsCI | GGATG | 5 cut(s) | 172, 625, 1199, 1546, 1744 |
| BtsI | GCAGTG | 1 cut(s) | 1840 |
| BtsIMutI | CAGTG | 3 cut(s) | 1026, 1140, 1840 |
| CciI | TCATGA | 1 cut(s) | 919 |
| CfoI | GCGC | 1 cut(s) | 60 |
| Cfr13I | GGNCC | 4 cut(s) | 73, 701, 941, 1297 |
| Csp6I | GTAC | 3 cut(s) | 213, 904, 1788 |
| CviAII | CATG | 8 cut(s) | 148, 550, 668, 920, 1096, 1336, 1639, 1691 |
| CviQI | GTAC | 3 cut(s) | 213, 904, 1788 |
| DdeI | CTNAG | 6 cut(s) | 129, 687, 723, 1029, 1227, 1345 |
| DpnI | GATC | 4 cut(s) | 360, 680, 951, 1276 |
| DpnII | GATC | 4 cut(s) | 358, 678, 949, 1274 |
| DraI | TTTAAA | 1 cut(s) | 1309 |
| DraIII | CACNNNGTG | 2 cut(s) | 48, 151 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 187, 1371 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 187, 1371 |
| Eam1104I | CTCTTC | 3 cut(s) | 226, 927, 1698 |
| EarI | CTCTTC | 3 cut(s) | 226, 927, 1698 |
| EciI | GGCGGA | 1 cut(s) | 1920 |
| Eco105I | TACGTA | 1 cut(s) | 1615 |
| Eco130I | CCWWGG | 4 cut(s) | 192, 258, 532, 1095 |
| Eco24I | GRGCYC | 1 cut(s) | 1125 |
| Eco31I | GGTCTC | 1 cut(s) | 268 |
| Eco47I | GGWCC | 4 cut(s) | 73, 701, 941, 1297 |
| Eco57I | CTGAAG | 2 cut(s) | 461, 805 |
| Eco88I | CYCGRG | 4 cut(s) | 265, 606, 1286, 1747 |
| EcoO109I | RGGNCCY | 2 cut(s) | 941, 1297 |
| EcoRII | CCWGG | 1 cut(s) | 419 |
| EcoT14I | CCWWGG | 4 cut(s) | 192, 258, 532, 1095 |
| EcoT38I | GRGCYC | 1 cut(s) | 1125 |
| ErhI | CCWWGG | 4 cut(s) | 192, 258, 532, 1095 |
| Esp3I | CGTCTC | 1 cut(s) | 1379 |
| FaeI | CATG | 8 cut(s) | 151, 553, 671, 923, 1099, 1339, 1642, 1694 |
| FaqI | GGGAC | 3 cut(s) | 139, 1014, 1283 |
| FatI | CATG | 8 cut(s) | 147, 549, 667, 919, 1095, 1335, 1638, 1690 |
| FauI | CCCGC | 1 cut(s) | 831 |
| FbaI | TGATCA | 2 cut(s) | 358, 678 |
| FblI | GTMKAC | 1 cut(s) | 1497 |
| Fnu4HI | GCNGC | 4 cut(s) | 985, 1317, 1781, 1896 |
| FokI | GGATG | 5 cut(s) | 179, 632, 1206, 1553, 1751 |
| FriOI | GRGCYC | 1 cut(s) | 1125 |
| Fsp4HI | GCNGC | 4 cut(s) | 985, 1317, 1781, 1896 |
| FspBI | CTAG | 5 cut(s) | 533, 645, 1331, 1635, 1662 |
| GlaI | GCGC | 1 cut(s) | 59 |
| GluI | GCNGC | 4 cut(s) | 985, 1317, 1781, 1896 |
| GsuI | CTGGAG | 1 cut(s) | 1305 |
| HapII | CCGG | 2 cut(s) | 1506, 1736 |
| HhaI | GCGC | 1 cut(s) | 60 |
| Hin1II | CATG | 8 cut(s) | 151, 553, 671, 923, 1099, 1339, 1642, 1694 |
| Hin6I | GCGC | 1 cut(s) | 58 |
| HinP1I | GCGC | 1 cut(s) | 58 |
| HindIII | AAGCTT | 1 cut(s) | 1232 |
| HpaII | CCGG | 2 cut(s) | 1506, 1736 |
| HphI | GGTGA | 8 cut(s) | 590, 688, 973, 1003, 1520, 1710, 1768, 1777 |
| Hpy166II | GTNNAC | 5 cut(s) | 213, 388, 880, 964, 1498 |
| Hpy8I | GTNNAC | 5 cut(s) | 213, 388, 880, 964, 1498 |
| HpyAV | CCTTC | 5 cut(s) | 82, 797, 829, 1442, 1582 |
| HpyCH4III | ACNGT | 2 cut(s) | 367, 712 |
| HpyCH4IV | ACGT | 2 cut(s) | 540, 1614 |
| HpyCH4V | TGCA | 5 cut(s) | 707, 807, 1219, 1261, 1463 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 752, 1341, 1350, 1421, 1780, 1880 |
| HpyF3I | CTNAG | 6 cut(s) | 129, 687, 723, 1029, 1227, 1345 |
| HpySE526I | ACGT | 2 cut(s) | 540, 1614 |
| Hsp92II | CATG | 8 cut(s) | 151, 553, 671, 923, 1099, 1339, 1642, 1694 |
| HspAI | GCGC | 1 cut(s) | 58 |
| KflI | GGGWCCC | 1 cut(s) | 1297 |
| Ksp22I | TGATCA | 2 cut(s) | 358, 678 |
| Kzo9I | GATC | 4 cut(s) | 358, 678, 949, 1274 |
| LmnI | GCTCC | 2 cut(s) | 37, 1324 |
| Lsp1109I | GCAGC | 4 cut(s) | 996, 1303, 1792, 1882 |
| LweI | GCATC | 3 cut(s) | 104, 1331, 1411 |
| MaeI | CTAG | 5 cut(s) | 533, 645, 1331, 1635, 1662 |
| MaeII | ACGT | 2 cut(s) | 540, 1614 |
| MaeIII | GTNAC | 7 cut(s) | 536, 1024, 1456, 1716, 1756, 1820, 1850 |
| MalI | GATC | 4 cut(s) | 360, 680, 951, 1276 |
| MboI | GATC | 4 cut(s) | 358, 678, 949, 1274 |
| MflI | RGATCY | 1 cut(s) | 1274 |
| MhlI | GDGCHC | 3 cut(s) | 42, 340, 1125 |
| MlyI | GAGTC | 6 cut(s) | 197, 324, 712, 1042, 1724, 1739 |
| MmeI | TCCRAC | 5 cut(s) | 261, 323, 1079, 1387, 1387 |
| MslI | CAYNNNNRTG | 4 cut(s) | 206, 924, 1008, 1889 |
| MspA1I | CMGCKG | 1 cut(s) | 439 |
| MspCI | CTTAAG | 1 cut(s) | 968 |
| MspI | CCGG | 2 cut(s) | 1506, 1736 |
| MspR9I | CCNGG | 2 cut(s) | 421, 1506 |
| MvaI | CCWGG | 1 cut(s) | 421 |
| MvnI | CGCG | 1 cut(s) | 60 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 752, 1341, 1350, 1421, 1780, 1880 |
| NciI | CCSGG | 1 cut(s) | 1506 |
| NcoI | CCATGG | 1 cut(s) | 1095 |
| NdeII | GATC | 4 cut(s) | 358, 678, 949, 1274 |
| NlaIII | CATG | 8 cut(s) | 151, 553, 671, 923, 1099, 1339, 1642, 1694 |
| NlaIV | GGNNCC | 3 cut(s) | 369, 1298, 1299 |
| NmuCI | GTSAC | 4 cut(s) | 1024, 1716, 1756, 1820 |
| NspI | RCATGY | 1 cut(s) | 553 |
| OliI | CACNNNNGTG | 1 cut(s) | 1889 |
| PaeR7I | CTCGAG | 2 cut(s) | 265, 1286 |
| PagI | TCATGA | 1 cut(s) | 919 |
| PciI | ACATGT | 1 cut(s) | 549 |
| PfeI | GAWTC | 4 cut(s) | 198, 293, 634, 994 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 326, 1560 |
| PkrI | GCNGC | 4 cut(s) | 986, 1318, 1782, 1897 |
| PleI | GAGTC | 6 cut(s) | 196, 324, 712, 1041, 1723, 1739 |
| PpsI | GAGTC | 6 cut(s) | 196, 324, 712, 1041, 1723, 1739 |
| Ppu21I | YACGTR | 2 cut(s) | 541, 1615 |
| PpuMI | RGGWCCY | 2 cut(s) | 941, 1297 |
| PscI | ACATGT | 1 cut(s) | 549 |
| PshBI | ATTAAT | 1 cut(s) | 204 |
| Psp5II | RGGWCCY | 2 cut(s) | 941, 1297 |
| Psp6I | CCWGG | 1 cut(s) | 419 |
| PspGI | CCWGG | 1 cut(s) | 419 |
| PspN4I | GGNNCC | 3 cut(s) | 369, 1298, 1299 |
| PspPI | GGNCC | 4 cut(s) | 73, 701, 941, 1297 |
| PspPPI | RGGWCCY | 2 cut(s) | 941, 1297 |
| PstI | CTGCAG | 1 cut(s) | 1465 |
| PsuI | RGATCY | 1 cut(s) | 1274 |
| PvuII | CAGCTG | 1 cut(s) | 439 |
| RsaI | GTAC | 3 cut(s) | 214, 905, 1789 |
| RsaNI | GTAC | 3 cut(s) | 213, 904, 1788 |
| RseI | CAYNNNNRTG | 4 cut(s) | 206, 924, 1008, 1889 |
| SatI | GCNGC | 4 cut(s) | 985, 1317, 1781, 1896 |
| Sau3AI | GATC | 4 cut(s) | 358, 678, 949, 1274 |
| Sau96I | GGNCC | 4 cut(s) | 73, 701, 941, 1297 |
| SchI | GAGTC | 6 cut(s) | 197, 324, 712, 1042, 1724, 1739 |
| ScrFI | CCNGG | 2 cut(s) | 421, 1506 |
| SduI | GDGCHC | 3 cut(s) | 42, 340, 1125 |
| SfaNI | GCATC | 3 cut(s) | 104, 1331, 1411 |
| SfcI | CTRYAG | 2 cut(s) | 1386, 1461 |
| Sfr274I | CTCGAG | 2 cut(s) | 265, 1286 |
| SinI | GGWCC | 4 cut(s) | 73, 701, 941, 1297 |
| SlaI | CTCGAG | 2 cut(s) | 265, 1286 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 206, 924, 1008, 1889 |
| SmlI | CTYRAG | 3 cut(s) | 265, 968, 1286 |
| SmoI | CTYRAG | 3 cut(s) | 265, 968, 1286 |
| SnaBI | TACGTA | 1 cut(s) | 1615 |
| SsiI | CCGC | 4 cut(s) | 60, 838, 1774, 1905 |
| SspI | AATATT | 1 cut(s) | 777 |
| SspMI | CTAG | 5 cut(s) | 533, 645, 1331, 1635, 1662 |
| StyD4I | CCNGG | 2 cut(s) | 419, 1504 |
| StyI | CCWWGG | 4 cut(s) | 192, 258, 532, 1095 |
| TaaI | ACNGT | 2 cut(s) | 367, 712 |
| TaiI | ACGT | 2 cut(s) | 543, 1617 |
| TaqI | TCGA | 3 cut(s) | 266, 1287, 1912 |
| TatI | WGTACW | 1 cut(s) | 903 |
| TfiI | GAWTC | 4 cut(s) | 198, 293, 634, 994 |
| TscAI | CASTG | 3 cut(s) | 1033, 1140, 1840 |
| TseFI | GTSAC | 4 cut(s) | 1024, 1716, 1756, 1820 |
| TseI | GCWGC | 4 cut(s) | 984, 1316, 1780, 1895 |
| Tsp45I | GTSAC | 4 cut(s) | 1024, 1716, 1756, 1820 |
| TspGWI | ACGGA | 1 cut(s) | 1874 |
| TspRI | CASTG | 3 cut(s) | 1033, 1140, 1840 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 326, 1560 |
| Vha464I | CTTAAG | 1 cut(s) | 968 |
| VpaK11BI | GGWCC | 4 cut(s) | 73, 701, 941, 1297 |
| VspI | ATTAAT | 1 cut(s) | 204 |
| XapI | RAATTY | 4 cut(s) | 911, 1018, 1768, 1916 |
| XceI | RCATGY | 1 cut(s) | 553 |
| XhoI | CTCGAG | 2 cut(s) | 265, 1286 |
| XmaJI | CCTAGG | 1 cut(s) | 532 |
| XmiI | GTMKAC | 1 cut(s) | 1497 |
| XspI | CTAG | 5 cut(s) | 533, 645, 1331, 1635, 1662 |