Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8324391.1

Orthogroup ID

OG0001648

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 957

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8324391.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 617 bp

gaatggatccctgcttttagactggctaagcctgataagattggcatgcggcatctaggccgtccaatgatacggccagcccctcctgaggtgcaaatggaccttcctcttgaggttggagctgcaattgatgcatggtggagcgatggctggtgggaagggattataactggatttggcagctgtgatgataattttcaagtttactttccgggggaaagcttgctcttgaacatggacaaaaaggatctaagaatatctagagattggttgggggaccagtgggttgatattgaggcgaagcctgatgtcctctcagccatatcttcaacaattagctcttgcactaggccctttgtgtcatccaacattgccaaggatgttgaggatgttgattgtggtggtaatactttgtcatattctgaacttccttctagttctagacatgaaaaagatgaactaggcgcatctcccagttctgatcattttcctgaaaaaatggacttggtcaatgataagaagtcaccatcaataaaggacattggtactgaaggtgttgatggcaatgacagttctggtgatatacatgtccaaggtaatgatgatgatgatgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet BAH

Protein Analysis

205

Amino Acids

22.59

Weight (kDa)

4.33

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55600 AT5G55600 AT5G55600
fragaria_vesca	FvH4_3g00540 FvH4_3g00540 FvH4_3g00540 FvH4_3g00540 FvH4_3g00540 FvH4_3g29480 FvH4_3g29480 FvH4_3g29480
malus_domestica	MD00G1057800.v1.1 MD03G1186700.v1.1 MD10G1336900.v1.1 MD11G1201800.v1.1
prunus_persica	Prupe.4G006500_v2.0.a1 Prupe.4G006500_v2.0.a1 Prupe.4G006500_v2.0.a1 Prupe.4G006500_v2.0.a1 Prupe.4G239800_v2.0.a1 Prupe.4G239800_v2.0.a1
pyrus_communis	pycom03g13890 pycom05g32630 pycom10g28640 pycom11g17430
rosa_chinensis	RchiOBHm_Chr5g0000741 RchiOBHm_Chr5g0054361
rosa_laevigata	RLG00000030891 RLG00000034926
rosa_multiflora	Rmu_co8288121.1_g000001 Rmu_co8324391.1_g000001 Rmu_co8332439.1_g000001 Rmu_co8394963.1_g000001 Rmu_sc0000255.1_g000004
rosa_roxburghii	Rroxscaffold_1G00026510 Rroxscaffold_1G00075490
rosa_rugosa	Rorug04G0386200 Rorug05G0285800
rosa_samantha	Rh5AG006100 Rh5AG356300 Rh5BG007900 Rh5BG367900 Rh5CG006600 Rh5CG391200 Rh5DG006600 Rh5DG382100
rosa_wichuraiana	Rw5G000620 Rw5G033470 Rw5G033640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AciI	CCGC	1 cut(s)	49
AclWI	GGATC	2 cut(s)	14, 255
AcoI	YGGCCR	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	3 cut(s)	200, 232, 330
AluBI	AGCT	4 cut(s)	122, 183, 222, 339
AluI	AGCT	4 cut(s)	122, 183, 222, 339
AlwI	GGATC	2 cut(s)	14, 255
AoxI	GGCC	3 cut(s)	58, 74, 350
ApeKI	GCWGC	2 cut(s)	122, 180
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	3 cut(s)	100, 277, 351
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	516, 590
AvaII	GGWCC	2 cut(s)	100, 277
AxyI	CCTNAGG	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	109, 192
BccI	CCATC	3 cut(s)	140, 535, 554
BceAI	ACGGC	2 cut(s)	45, 89
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	213
BfaI	CTAG	6 cut(s)	56, 261, 348, 435, 441, 461
BisI	GCNGC	3 cut(s)	50, 123, 181
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	3 cut(s)	51, 124, 182
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	2 cut(s)	100, 277
BmgT120I	GGNCC	3 cut(s)	100, 277, 351
BmiI	GGNNCC	2 cut(s)	8, 278
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	3 cut(s)	61, 121, 476
BmuI	ACTGGG	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	212, 375, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	4 cut(s)	27, 175, 280, 474
Bse21I	CCTNAGG	1 cut(s)	87
Bse3DI	GCAATG	2 cut(s)	369, 571
BseDI	CCNNGG	3 cut(s)	212, 375, 592
BseGI	GGATG	3 cut(s)	362, 385, 394
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	2 cut(s)	369, 571
BseMII	CTCAG	2 cut(s)	78, 330
BseNI	ACTGG	4 cut(s)	27, 175, 280, 474
BseXI	GCAGC	2 cut(s)	109, 192
BshFI	GGCC	3 cut(s)	60, 76, 352
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	3 cut(s)	60, 76, 352
Bsp143I	GATC	3 cut(s)	6, 247, 481
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	3 cut(s)	60, 76, 352
BspCNI	CTCAG	2 cut(s)	79, 329
BspLI	GGNNCC	2 cut(s)	8, 278
BspPI	GGATC	2 cut(s)	14, 255
BsrDI	GCAATG	2 cut(s)	369, 571
BsrI	ACTGG	4 cut(s)	27, 175, 280, 474
BssECI	CCNNGG	3 cut(s)	212, 375, 592
BssMI	GATC	3 cut(s)	6, 247, 481
BssT1I	CCWWGG	2 cut(s)	375, 592
Bst4CI	ACNGT	1 cut(s)	572
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	47, 78, 224
BstDEI	CTNAG	4 cut(s)	27, 87, 251, 316
BstF5I	GGATG	3 cut(s)	362, 385, 394
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	3 cut(s)	9, 250, 484
BstMBI	GATC	3 cut(s)	6, 247, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	2 cut(s)	49, 590
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	109, 192
BstX2I	RGATCY	2 cut(s)	6, 247
BstYI	RGATCY	2 cut(s)	6, 247
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	60, 76, 352
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	362, 385, 394
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	3 cut(s)	47, 78, 224
CfoI	GCGC	1 cut(s)	467
Cfr13I	GGNCC	3 cut(s)	100, 277, 351
Csp6I	GTAC	1 cut(s)	546
CviAII	CATG	5 cut(s)	46, 135, 235, 446, 587
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	4 cut(s)	27, 87, 251, 316
DpnI	GATC	3 cut(s)	8, 249, 483
DpnII	GATC	3 cut(s)	6, 247, 481
EaeI	YGGCCR	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	375, 592
Eco47I	GGWCC	2 cut(s)	100, 277
Eco57I	CTGAAG	1 cut(s)	570
Eco81I	CCTNAGG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	351
EcoT14I	CCWWGG	2 cut(s)	375, 592
EcoT22I	ATGCAT	1 cut(s)	136
ErhI	CCWWGG	2 cut(s)	375, 592
FaeI	CATG	5 cut(s)	49, 138, 238, 449, 590
FaiI	YATR	9 cut(s)	47, 136, 167, 236, 323, 418, 447, 584, 588
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	5 cut(s)	45, 134, 234, 445, 586
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	3 cut(s)	50, 123, 181
FokI	GGATG	3 cut(s)	349, 392, 401
Fsp4HI	GCNGC	3 cut(s)	50, 123, 181
FspBI	CTAG	6 cut(s)	56, 261, 348, 435, 441, 461
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	3 cut(s)	50, 123, 181
HaeIII	GGCC	3 cut(s)	60, 76, 352
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	5 cut(s)	49, 138, 238, 449, 590
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HindIII	AAGCTT	1 cut(s)	220
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	516, 590
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	424, 481
Hpy188III	TCNNGA	6 cut(s)	86, 110, 229, 261, 441, 491
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	4 cut(s)	113, 152, 441, 545
HpyCH4III	ACNGT	1 cut(s)	572
HpyCH4V	TGCA	4 cut(s)	94, 125, 134, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	4 cut(s)	27, 87, 251, 316
Hsp92II	CATG	5 cut(s)	49, 138, 238, 449, 590
HspAI	GCGC	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	6, 247, 481
LmnI	GCTCC	2 cut(s)	119, 141
Lsp1109I	GCAGC	2 cut(s)	109, 192
LweI	GCATC	3 cut(s)	61, 121, 476
MaeI	CTAG	6 cut(s)	56, 261, 348, 435, 441, 461
MaeIII	GTNAC	1 cut(s)	522
MalI	GATC	3 cut(s)	8, 249, 483
MboI	GATC	3 cut(s)	6, 247, 481
MboII	GAAGA	1 cut(s)	318
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	2 cut(s)	6, 247
MluCI	AATT	3 cut(s)	126, 193, 333
MmeI	TCCRAC	2 cut(s)	97, 390
MnlI	CCTC	7 cut(s)	82, 93, 106, 117, 289, 323, 379
Mph1103I	ATGCAT	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	3 cut(s)	6, 247, 481
NlaIII	CATG	5 cut(s)	49, 138, 238, 449, 590
NlaIV	GGNNCC	2 cut(s)	8, 278
NmuCI	GTSAC	1 cut(s)	522
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	2 cut(s)	49, 590
PaeI	GCATGC	1 cut(s)	49
PciI	ACATGT	1 cut(s)	586
PflFI	GACNNNGTC	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	51, 124, 182
PscI	ACATGT	1 cut(s)	586
PsiI	TTATAA	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	8, 278
PspPI	GGNCC	3 cut(s)	100, 277, 351
PsuI	RGATCY	2 cut(s)	6, 247
PsyI	GACNNNGTC	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	183
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
SatI	GCNGC	3 cut(s)	50, 123, 181
Sau3AI	GATC	3 cut(s)	6, 247, 481
Sau96I	GGNCC	3 cut(s)	100, 277, 351
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	9 cut(s)	93, 105, 117, 124, 185, 224, 341, 556, 598
SfaNI	GCATC	3 cut(s)	61, 121, 476
SinI	GGWCC	2 cut(s)	100, 277
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	49
Sse9I	AATT	3 cut(s)	126, 193, 333
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	6 cut(s)	56, 261, 348, 435, 441, 461
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	2 cut(s)	375, 592
TaaI	ACNGT	1 cut(s)	572
TasI	AATT	3 cut(s)	126, 193, 333
TauI	GCSGC	1 cut(s)	52
TscAI	CASTG	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	522
TseI	GCWGC	2 cut(s)	122, 180
Tsp45I	GTSAC	1 cut(s)	522
TspDTI	ATGAA	2 cut(s)	462, 471
TspRI	CASTG	1 cut(s)	287
Tth111I	GACNNNGTC	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	100, 277
XbaI	TCTAGA	2 cut(s)	260, 440
XceI	RCATGY	2 cut(s)	49, 590
XspI	CTAG	6 cut(s)	56, 261, 348, 435, 441, 461
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.