Rmu_co8288121.1_g000001

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8288121.1
OG0001648
Physical Location & Seq
Reverse (-)
1 .. 826
826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8288121.1_g000001.1.cds

Sequence Viewer

Length: 717 bp
atggcaaagggagaaaatcggtatgttgcttatatggaagatatgtatgaagacaaaaggggtcaaaaaaaggtcaaagtgaggtggtttcaccgtaatcaggaagttaagggggtaattcctctgcaaaatcctcacccaaaggaagtcttcatcacgccatatgtgcaggtcattagtgcagagtgtgttgatggtcctgcaacagttttaactcgtgaacattatgaaaagtgcgtacttgtgtttcctcaggctttattggccaaagtacatctttgctacaggcagtttaaaagtaaaagggtgaagccatttgatttgagtaagatgcatggatattttgttcagccaattctctcttatttgagtcccaactttttaccaaattcagagtgtataagtggtagtctgattggaaaagaagataagttgggcccaagtgactatgtaaagctgggaactaagaggactagaaatggaaggccatgccagagggttccaactaatcaaaactcaaactttggttttctggacaggaggttgctttcttggtataccccactgtttaaggttgatgaaaagatagaattgctatgccaagatagtggcattcggggctgctggtttaggtgtacggtcttgcagacatctcgaaagcagattagagtccattacaatgatttgcttgatgaggaaggatgtggcaatcttgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet BAH

Protein Analysis

239

Amino Acids

27.77

Weight (kDa)

9.22

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 557
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 388
AfaI GTAC 3 cut(s) 240, 273, 637
AfiI CCNNNNNNNGG 1 cut(s) 100
AloI GAACNNNNNNTCC 2 cut(s) 330, 362
AluBI AGCT 1 cut(s) 457
AluI AGCT 1 cut(s) 457
AoxI GGCC 3 cut(s) 264, 436, 485
ApaI GGGCCC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 621
ApoI RAATTY 1 cut(s) 388
AspS9I GGNCC 3 cut(s) 197, 436, 437
AsuHPI GGTGA 3 cut(s) 83, 128, 319
AvaII GGWCC 1 cut(s) 197
AxyI CCTNAGG 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 440
BalI TGGCCA 1 cut(s) 266
BanII GRGCYC 1 cut(s) 440
BauI CACGAG 1 cut(s) 216
BbsI GAAGAC 2 cut(s) 57, 142
BbvI GCAGC 1 cut(s) 608
BccI CCATC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 283
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 1 cut(s) 622
BlsI GCNGC 1 cut(s) 623
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 3 cut(s) 197, 436, 437
BmiI GGNNCC 2 cut(s) 438, 501
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 2 cut(s) 57, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse21I CCTNAGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 707
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 440
BseXI GCAGC 1 cut(s) 608
BseYI CCCAGC 1 cut(s) 457
BsgI GTGCAG 2 cut(s) 188, 201
BshFI GGCC 3 cut(s) 266, 438, 487
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 357
BsmI GAATGC 1 cut(s) 612
BsnI GGCC 3 cut(s) 266, 438, 487
Bsp120I GGGCCC 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 440
BspANI GGCC 3 cut(s) 266, 438, 487
BspCNI CTCAG 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 438, 501
BspMI ACCTGC 1 cut(s) 160
BssNAI GTATAC 1 cut(s) 558
BssSI CACGAG 1 cut(s) 216
Bst1107I GTATAC 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 216
Bst4CI ACNGT 4 cut(s) 95, 208, 567, 640
BstDEI CTNAG 2 cut(s) 252, 465
BstF5I GGATG 1 cut(s) 707
BstMWI GCNNNNNNNGC 3 cut(s) 166, 263, 618
BstSFI CTRYAG 1 cut(s) 283
BstSLI GKGCMC 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 608
BstV2I GAAGAC 2 cut(s) 57, 142
BstXI CCANNNNNNTGG 1 cut(s) 608
BstZ17I GTATAC 1 cut(s) 558
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 3 cut(s) 266, 438, 487
BtsCI GGATG 1 cut(s) 707
BtsIMutI CAGTG 1 cut(s) 563
BveI ACCTGC 1 cut(s) 160
Cfr13I GGNCC 3 cut(s) 197, 436, 437
Csp6I GTAC 3 cut(s) 239, 272, 636
CviAII CATG 2 cut(s) 335, 489
CviJI RGCY 8 cut(s) 257, 266, 313, 352, 438, 457, 487, 621
CviKI_1 RGCY 8 cut(s) 257, 266, 313, 352, 438, 457, 487, 621
CviQI GTAC 3 cut(s) 239, 272, 636
DdeI CTNAG 2 cut(s) 252, 465
DraI TTTAAA 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 197
Eco81I CCTNAGG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 440
FaeI CATG 2 cut(s) 338, 492
FalI AAGNNNNNCTT 4 cut(s) 134, 166, 261, 293
FaqI GGGAC 1 cut(s) 357
FatI CATG 2 cut(s) 334, 488
FauNDI CATATG 1 cut(s) 163
FblI GTMKAC 1 cut(s) 557
Fnu4HI GCNGC 1 cut(s) 622
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 622
FspBI CTAG 1 cut(s) 474
GluI GCNGC 1 cut(s) 622
GsaI CCCAGC 1 cut(s) 461
HaeIII GGCC 3 cut(s) 266, 438, 487
Hin1II CATG 2 cut(s) 338, 492
HinfI GANTC 2 cut(s) 370, 669
HphI GGTGA 3 cut(s) 83, 128, 319
Hpy166II GTNNAC 3 cut(s) 221, 558, 636
Hpy188I TCNGA 2 cut(s) 394, 414
Hpy188III TCNNGA 5 cut(s) 101, 218, 533, 654, 713
Hpy8I GTNNAC 3 cut(s) 221, 558, 636
HpyAV CCTTC 2 cut(s) 477, 692
HpyCH4III ACNGT 4 cut(s) 95, 208, 567, 640
HpyCH4V TGCA 6 cut(s) 127, 169, 182, 203, 334, 646
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 263, 618
HpyF3I CTNAG 2 cut(s) 252, 465
Hsp92II CATG 2 cut(s) 338, 492
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 443
MboII GAAGA 4 cut(s) 50, 62, 142, 437
MhlI GDGCHC 1 cut(s) 440
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 4 cut(s) 117, 354, 388, 590
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 2 cut(s) 379, 678
MmeI TCCRAC 1 cut(s) 527
MnlI CCTC 8 cut(s) 75, 132, 144, 261, 462, 489, 534, 688
Mox20I TGGCCA 1 cut(s) 266
Mph1103I ATGCAT 1 cut(s) 336
MscI TGGCCA 1 cut(s) 266
MseI TTAA 4 cut(s) 108, 212, 294, 570
MslI CAYNNNNRTG 1 cut(s) 678
Msp20I TGGCCA 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 612
MwoI GCNNNNNNNGC 3 cut(s) 166, 263, 618
NdeI CATATG 1 cut(s) 163
NlaIII CATG 2 cut(s) 338, 492
NlaIV GGNNCC 2 cut(s) 438, 501
NmuCI GTSAC 1 cut(s) 443
NsiI ATGCAT 1 cut(s) 336
PctI GAATGC 1 cut(s) 612
PkrI GCNGC 1 cut(s) 623
PleI GAGTC 2 cut(s) 378, 677
PpsI GAGTC 2 cut(s) 378, 677
PspFI CCCAGC 1 cut(s) 457
PspN4I GGNNCC 2 cut(s) 438, 501
PspOMI GGGCCC 1 cut(s) 436
PspPI GGNCC 3 cut(s) 197, 436, 437
RsaI GTAC 3 cut(s) 240, 273, 637
RsaNI GTAC 3 cut(s) 239, 272, 636
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 4 cut(s) 108, 212, 294, 570
SatI GCNGC 1 cut(s) 622
Sau96I GGNCC 3 cut(s) 197, 436, 437
SchI GAGTC 2 cut(s) 379, 678
SduI GDGCHC 1 cut(s) 440
SetI ASST 7 cut(s) 75, 86, 174, 459, 545, 576, 635
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 283
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 713
SmoI CTYRAG 1 cut(s) 713
Sse9I AATT 4 cut(s) 117, 354, 388, 590
SspMI CTAG 1 cut(s) 474
TaaI ACNGT 4 cut(s) 95, 208, 567, 640
TaqI TCGA 1 cut(s) 655
TasI AATT 4 cut(s) 117, 354, 388, 590
TatI WGTACW 1 cut(s) 271
Tru1I TTAA 4 cut(s) 108, 212, 294, 570
Tru9I TTAA 4 cut(s) 108, 212, 294, 570
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 1 cut(s) 621
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 4 cut(s) 63, 142, 243, 594
TspRI CASTG 1 cut(s) 570
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 557
XspI CTAG 1 cut(s) 474
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.