RLG00000034926

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001648
Physical Location & Seq
Forward (+)
57177201 .. 57185437
8237 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034926

Sequence Viewer

Length: 1563 bp
ATGTCTGGAAATGAGCACTGTTTCGTAGAATGGAAAGAACACTTTGTTTCACAGGAGAGGGGCAACCGTGTGGTTCATTATTTCTTGAAGGATTCTGGTGGAGAATCCATACTTGCAGTTATAGGTACGGAGAGGAGTGTTAGGCACATGTTCTATGTTGTTGCCGAGGAGTTTTTGCAAGTGCACGGAAAGGAAAACTCCGCTAATTCTAACTACAAATGGAGGTCGAGAAGGGAGGTCGTGGATTGGCTTACATCTATGCTGTCCAAGCAGCATTTACATGGAGATATGCTTGAGTCACTTCAGCATGATTCATCACGAGCTTTAGGTACTCCCGAATATCCAACTAATGCAATTAGTGGTCCCCAGATCCAAGTTTCCAAAGACTCGGGTCATCTTGCAAAGAACTTCAAGATGAACAGTCCAGACATTGTTTGGTCAGGTGTTTCATGGACATGTGGTAAACAGCTCAAGCATTTTCCTGCATTCTGTAGGAATGGGATTAAAATAGAGATTAAGTCCTTTGTATTCGTCATGGCAAAGGGAGAGAATCGGTATGTTGCTTATATGGAAGATATGTATGAAGACAAAAGGGGTCAAAAAAAGGTCAAAGTGAGGTGGTTTCACCGTAATCAGGAAGTTAAGGGGGTAATTCCTCTGCAAAATCCTCACCCAAAGGAAGTTTTCATCACGCCATATGTGCAGGTCATTAGTGCAGAGTGTGTTGATGGTCCTGCAACAGTTCTAACTCGTGAACATTATGAAAAGTGCGTACTTGTGTTTCCTCAGGCTTTATTGGCCAAAGTACATCTTTGCTACAGGCAGTTTAAAAGTAAAAGGGTGAAGCCATTTGATTTGAGTAAGATGCATGGTTATTTTGTTCAGCCGATTCTCTCTTATTTGAGTCCCAACTTTTTACCAAATTCAGAGTGTATGAGTGGTAGTCTGATTGGAAAAGAAGATAAGTTGGGCCCAAGTGACTATGTAAAGCTGGGAACTAAGAGGACTAGAAATGGAAGGCCATGCCAGAGGGTTCCAACTAATCAAAACTCAAACTTTGGTTTTCTGGACAGGAGGTTGCTTTCTTGGTATACCCCACTGTTTAAGGTTGATGAAAAGATAGAATTGCTATGCCAAGATAGTGGCATTCGGGGCTGCTGGTTTAGGTGTACAGTCTTGCAGACATCTCGAAAGCAGATTAGAGTCCAATACAATGATTTGCTAGATGAGGGAGGATGTGGCAATCTTGAGGAATGGATCCCTGCTTTTAGACTGGCTAAGCCTGATAAGATTGGCATGCGGCATCTAGGCCGTCCAATGATACGGCCAGCCCCTCCTGAGGTGCAAATGGACCTTCCTCTTGAGGTTGGAGCTGCAATTGATGCATGGTGGAGTGATGGCTGGTGGGAAGGGATTATAACTGGATTTGGCAGCTGTGATGATAATTTTCAAGTTTACTTTCCGGGTATGCTTAGTAGAATTGAATATGGTTTTACTTTTTTTTATGTTAATCTTTCTGTTATAATTTTTCCCTTTTTTTTTTCCTTCCCTTGGGCTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet BAH

Protein Analysis

521

Amino Acids

59.96

Weight (kDa)

8.86

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 170 - 258 5.9e-09 BAH domain
Agenet PF05641 372 - 446 8.5e-17 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1418, 1523
Acc36I ACCTGC 1 cut(s) 694
AccI GTMKAC 1 cut(s) 1091
AciI CCGC 2 cut(s) 201, 1300
AclWI GGATC 3 cut(s) 364, 1252, 1265
AcoI YGGCCR 2 cut(s) 798, 1325
AcsI RAATTY 1 cut(s) 922
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 5 cut(s) 127, 331, 774, 807, 1171
AfiI CCNNNNNNNGG 3 cut(s) 634, 1339, 1551
AflIII ACRYGT 2 cut(s) 147, 455
AgsI TTSAA 4 cut(s) 88, 412, 1451, 1484
AluBI AGCT 5 cut(s) 323, 469, 991, 1373, 1434
AluI AGCT 5 cut(s) 323, 469, 991, 1373, 1434
Alw21I GWGCWC 2 cut(s) 18, 186
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 3 cut(s) 364, 1252, 1265
Ama87I CYCGRG 1 cut(s) 388
AoxI GGCC 5 cut(s) 798, 970, 1019, 1309, 1325
ApaI GGGCCC 1 cut(s) 974
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 4 cut(s) 271, 1155, 1373, 1431
ApoI RAATTY 1 cut(s) 922
AspS9I GGNCC 5 cut(s) 362, 731, 970, 971, 1351
AsuC2I CCSGG 1 cut(s) 1464
AsuHPI GGTGA 3 cut(s) 617, 662, 853
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 3 cut(s) 362, 731, 1351
AxyI CCTNAGG 2 cut(s) 786, 1338
BaeGI GKGCMC 2 cut(s) 186, 974
BalI TGGCCA 1 cut(s) 800
BamHI GGATCC 1 cut(s) 1257
BanII GRGCYC 1 cut(s) 974
BauI CACGAG 2 cut(s) 318, 750
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 2 cut(s) 18, 186
BbvI GCAGC 4 cut(s) 283, 1142, 1360, 1443
BccI CCATC 2 cut(s) 722, 1391
BceAI ACGGC 2 cut(s) 1296, 1340
BcgI CGANNNNNNTGC 2 cut(s) 1169, 1203
BcnI CCSGG 1 cut(s) 1464
BfaI CTAG 3 cut(s) 1008, 1223, 1307
BfmI CTRYAG 2 cut(s) 490, 817
BfuAI ACCTGC 1 cut(s) 694
BisI GCNGC 5 cut(s) 272, 1156, 1301, 1374, 1432
BlpI GCTNAGC 1 cut(s) 1278
BlsI GCNGC 5 cut(s) 273, 1157, 1302, 1375, 1433
Bme1390I CCNGG 1 cut(s) 1464
Bme18I GGWCC 3 cut(s) 362, 731, 1351
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 5 cut(s) 362, 731, 970, 971, 1351
BmiI GGNNCC 4 cut(s) 364, 972, 1035, 1259
BmrFI CCNGG 1 cut(s) 1464
BmsI GCATC 3 cut(s) 855, 1312, 1372
BoxI GACNNNNGTC 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 591
Bpu1102I GCTNAGC 1 cut(s) 1278
BpuEI CTTGAG 4 cut(s) 314, 455, 1268, 1382
BpuMI CCSGG 1 cut(s) 1464
BsaJI CCNNGG 2 cut(s) 165, 1550
Bsc4I CCNNNNNNNGG 3 cut(s) 634, 1339, 1551
Bse1I ACTGG 2 cut(s) 1278, 1426
Bse21I CCTNAGG 2 cut(s) 786, 1338
BseDI CCNNGG 2 cut(s) 165, 1550
BseGI GGATG 1 cut(s) 1241
BseLI CCNNNNNNNGG 3 cut(s) 634, 1339, 1551
BseMII CTCAG 2 cut(s) 800, 1329
BseNI ACTGG 2 cut(s) 1278, 1426
BseRI GAGGAG 2 cut(s) 148, 182
BseSI GKGCMC 2 cut(s) 186, 974
BseXI GCAGC 4 cut(s) 283, 1142, 1360, 1443
BseYI CCCAGC 1 cut(s) 991
BsgI GTGCAG 2 cut(s) 722, 735
BshFI GGCC 5 cut(s) 800, 972, 1021, 1311, 1327
BsiHKAI GWGCWC 2 cut(s) 18, 186
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 1 cut(s) 1463
BslFI GGGAC 2 cut(s) 348, 891
BslI CCNNNNNNNGG 3 cut(s) 634, 1339, 1551
BsmFI GGGAC 2 cut(s) 348, 891
BsmI GAATGC 2 cut(s) 485, 1146
BsnI GGCC 5 cut(s) 800, 972, 1021, 1311, 1327
BsoBI CYCGRG 1 cut(s) 388
Bsp120I GGGCCC 1 cut(s) 970
Bsp1286I GDGCHC 3 cut(s) 18, 186, 974
Bsp1407I TGTACA 1 cut(s) 1169
Bsp143I GATC 2 cut(s) 369, 1257
Bsp1720I GCTNAGC 1 cut(s) 1278
BspACI CCGC 2 cut(s) 201, 1300
BspANI GGCC 5 cut(s) 800, 972, 1021, 1311, 1327
BspCNI CTCAG 2 cut(s) 799, 1330
BspLI GGNNCC 4 cut(s) 364, 972, 1035, 1259
BspMI ACCTGC 1 cut(s) 694
BspPI GGATC 3 cut(s) 364, 1252, 1265
BsrGI TGTACA 1 cut(s) 1169
BsrI ACTGG 2 cut(s) 1278, 1426
BssECI CCNNGG 2 cut(s) 165, 1550
BssMI GATC 2 cut(s) 369, 1257
BssNAI GTATAC 1 cut(s) 1092
BssSI CACGAG 2 cut(s) 318, 750
BssT1I CCWWGG 1 cut(s) 1550
Bst1107I GTATAC 1 cut(s) 1092
Bst2BI CACGAG 2 cut(s) 318, 750
Bst4CI ACNGT 7 cut(s) 20, 68, 422, 629, 742, 1101, 1174
BstAPI GCANNNNNTGC 1 cut(s) 1382
BstAUI TGTACA 1 cut(s) 1169
BstC8I GCNNGC 2 cut(s) 1298, 1329
BstDEI CTNAG 5 cut(s) 786, 999, 1278, 1338, 1472
BstF5I GGATG 1 cut(s) 1241
BstKTI GATC 2 cut(s) 372, 1260
BstMBI GATC 2 cut(s) 369, 1257
BstMWI GCNNNNNNNGC 5 cut(s) 268, 700, 797, 1152, 1382
BstNSI RCATGY 3 cut(s) 151, 459, 1300
BstPAI GACNNNNGTC 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 1462
BstSFI CTRYAG 2 cut(s) 490, 817
BstSLI GKGCMC 2 cut(s) 186, 974
BstV1I GCAGC 4 cut(s) 283, 1142, 1360, 1443
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 2 cut(s) 369, 1257
BstXI CCANNNNNNTGG 1 cut(s) 1142
BstYI RGATCY 2 cut(s) 369, 1257
BstZ17I GTATAC 1 cut(s) 1092
Bsu36I CCTNAGG 2 cut(s) 786, 1338
BsuRI GGCC 5 cut(s) 800, 972, 1021, 1311, 1327
BtsCI GGATG 1 cut(s) 1241
BtsIMutI CAGTG 2 cut(s) 16, 1097
BveI ACCTGC 1 cut(s) 694
Cac8I GCNNGC 2 cut(s) 1298, 1329
Cfr13I GGNCC 5 cut(s) 362, 731, 970, 971, 1351
Csp6I GTAC 5 cut(s) 126, 330, 773, 806, 1170
CviQI GTAC 5 cut(s) 126, 330, 773, 806, 1170
DdeI CTNAG 5 cut(s) 786, 999, 1278, 1338, 1472
DpnI GATC 2 cut(s) 371, 1259
DpnII GATC 2 cut(s) 369, 1257
DraI TTTAAA 1 cut(s) 829
EaeI YGGCCR 2 cut(s) 798, 1325
Eco130I CCWWGG 1 cut(s) 1550
Eco24I GRGCYC 1 cut(s) 974
Eco47I GGWCC 3 cut(s) 362, 731, 1351
Eco57I CTGAAG 1 cut(s) 287
Eco81I CCTNAGG 2 cut(s) 786, 1338
Eco88I CYCGRG 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 1550
EcoT22I ATGCAT 2 cut(s) 870, 1387
EcoT38I GRGCYC 1 cut(s) 974
ErhI CCWWGG 1 cut(s) 1550
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FaqI GGGAC 2 cut(s) 348, 891
FauNDI CATATG 1 cut(s) 697
FblI GTMKAC 1 cut(s) 1091
Fnu4HI GCNGC 5 cut(s) 272, 1156, 1301, 1374, 1432
FokI GGATG 1 cut(s) 1248
FriOI GRGCYC 1 cut(s) 974
Fsp4HI GCNGC 5 cut(s) 272, 1156, 1301, 1374, 1432
FspBI CTAG 3 cut(s) 1008, 1223, 1307
GluI GCNGC 5 cut(s) 272, 1156, 1301, 1374, 1432
GsaI CCCAGC 1 cut(s) 995
HaeIII GGCC 5 cut(s) 800, 972, 1021, 1311, 1327
HapII CCGG 1 cut(s) 1463
HinfI GANTC 9 cut(s) 92, 104, 296, 311, 386, 550, 889, 904, 1203
HpaII CCGG 1 cut(s) 1463
HphI GGTGA 3 cut(s) 617, 662, 853
Hpy166II GTNNAC 6 cut(s) 184, 464, 755, 1092, 1170, 1456
Hpy188I TCNGA 2 cut(s) 928, 948
Hpy8I GTNNAC 6 cut(s) 184, 464, 755, 1092, 1170, 1456
HpyAV CCTTC 6 cut(s) 82, 225, 1011, 1364, 1403, 1555
HpyCH4III ACNGT 7 cut(s) 20, 68, 422, 629, 742, 1101, 1174
HpyF10VI GCNNNNNNNGC 5 cut(s) 268, 700, 797, 1152, 1382
HpyF3I CTNAG 5 cut(s) 786, 999, 1278, 1338, 1472
Kzo9I GATC 2 cut(s) 369, 1257
LmnI GCTCC 1 cut(s) 1370
Lsp1109I GCAGC 4 cut(s) 283, 1142, 1360, 1443
LweI GCATC 3 cut(s) 855, 1312, 1372
MaeI CTAG 3 cut(s) 1008, 1223, 1307
MaeIII GTNAC 2 cut(s) 297, 977
MalI GATC 2 cut(s) 371, 1259
MboI GATC 2 cut(s) 369, 1257
MboII GAAGA 3 cut(s) 584, 596, 971
MfeI CAATTG 1 cut(s) 1377
MflI RGATCY 2 cut(s) 369, 1257
MhlI GDGCHC 3 cut(s) 18, 186, 974
MlsI TGGCCA 1 cut(s) 800
MluCI AATT 9 cut(s) 205, 354, 651, 922, 1124, 1377, 1444, 1479, 1524
MluNI TGGCCA 1 cut(s) 800
MlyI GAGTC 4 cut(s) 305, 380, 913, 1212
MmeI TCCRAC 3 cut(s) 368, 1061, 1348
Mox20I TGGCCA 1 cut(s) 800
Mph1103I ATGCAT 2 cut(s) 870, 1387
MscI TGGCCA 1 cut(s) 800
MseI TTAA 6 cut(s) 504, 516, 642, 828, 1104, 1509
MslI CAYNNNNRTG 2 cut(s) 279, 454
Msp20I TGGCCA 1 cut(s) 800
MspA1I CMGCKG 1 cut(s) 1434
MspI CCGG 1 cut(s) 1463
MspR9I CCNGG 1 cut(s) 1464
MunI CAATTG 1 cut(s) 1377
Mva1269I GAATGC 2 cut(s) 485, 1146
MwoI GCNNNNNNNGC 5 cut(s) 268, 700, 797, 1152, 1382
NciI CCSGG 1 cut(s) 1464
NdeI CATATG 1 cut(s) 697
NdeII GATC 2 cut(s) 369, 1257
NlaIV GGNNCC 4 cut(s) 364, 972, 1035, 1259
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 297, 977
NsiI ATGCAT 2 cut(s) 870, 1387
NspI RCATGY 3 cut(s) 151, 459, 1300
PaeI GCATGC 1 cut(s) 1300
PciI ACATGT 2 cut(s) 147, 455
PctI GAATGC 2 cut(s) 485, 1146
PfeI GAWTC 5 cut(s) 92, 104, 311, 550, 889
PkrI GCNGC 5 cut(s) 273, 1157, 1302, 1375, 1433
PleI GAGTC 4 cut(s) 304, 380, 912, 1211
PpsI GAGTC 4 cut(s) 304, 380, 912, 1211
PscI ACATGT 2 cut(s) 147, 455
PshAI GACNNNNGTC 1 cut(s) 390
PsiI TTATAA 2 cut(s) 1418, 1523
PspFI CCCAGC 1 cut(s) 991
PspN4I GGNNCC 4 cut(s) 364, 972, 1035, 1259
PspOMI GGGCCC 1 cut(s) 970
PspPI GGNCC 5 cut(s) 362, 731, 970, 971, 1351
PsuI RGATCY 2 cut(s) 369, 1257
PvuII CAGCTG 1 cut(s) 1434
RsaI GTAC 5 cut(s) 127, 331, 774, 807, 1171
RsaNI GTAC 5 cut(s) 126, 330, 773, 806, 1170
RseI CAYNNNNRTG 2 cut(s) 279, 454
SaqAI TTAA 6 cut(s) 504, 516, 642, 828, 1104, 1509
SatI GCNGC 5 cut(s) 272, 1156, 1301, 1374, 1432
Sau3AI GATC 2 cut(s) 369, 1257
Sau96I GGNCC 5 cut(s) 362, 731, 970, 971, 1351
SchI GAGTC 4 cut(s) 305, 380, 913, 1212
ScrFI CCNGG 1 cut(s) 1464
SduI GDGCHC 3 cut(s) 18, 186, 974
SfaNI GCATC 3 cut(s) 855, 1312, 1372
SfcI CTRYAG 2 cut(s) 490, 817
SinI GGWCC 3 cut(s) 362, 731, 1351
SmiMI CAYNNNNRTG 2 cut(s) 279, 454
SmlI CTYRAG 4 cut(s) 293, 470, 1247, 1361
SmoI CTYRAG 4 cut(s) 293, 470, 1247, 1361
SphI GCATGC 1 cut(s) 1300
Sse9I AATT 9 cut(s) 205, 354, 651, 922, 1124, 1377, 1444, 1479, 1524
SsiI CCGC 2 cut(s) 201, 1300
SspMI CTAG 3 cut(s) 1008, 1223, 1307
StyD4I CCNGG 1 cut(s) 1462
StyI CCWWGG 1 cut(s) 1550
TaaI ACNGT 7 cut(s) 20, 68, 422, 629, 742, 1101, 1174
TaqI TCGA 2 cut(s) 227, 1189
TasI AATT 9 cut(s) 205, 354, 651, 922, 1124, 1377, 1444, 1479, 1524
TatI WGTACW 2 cut(s) 805, 1169
TauI GCSGC 1 cut(s) 1303
TfiI GAWTC 5 cut(s) 92, 104, 311, 550, 889
Tru1I TTAA 6 cut(s) 504, 516, 642, 828, 1104, 1509
Tru9I TTAA 6 cut(s) 504, 516, 642, 828, 1104, 1509
TscAI CASTG 2 cut(s) 23, 1104
TseFI GTSAC 2 cut(s) 297, 977
TseI GCWGC 4 cut(s) 271, 1155, 1373, 1431
Tsp45I GTSAC 2 cut(s) 297, 977
TspDTI ATGAA 8 cut(s) 65, 303, 431, 438, 597, 676, 777, 1128
TspGWI ACGGA 2 cut(s) 143, 201
TspRI CASTG 2 cut(s) 23, 1104
VneI GTGCAC 1 cut(s) 182
VpaK11BI GGWCC 3 cut(s) 362, 731, 1351
XapI RAATTY 1 cut(s) 922
XceI RCATGY 3 cut(s) 151, 459, 1300
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XmiI GTMKAC 1 cut(s) 1091
XspI CTAG 3 cut(s) 1008, 1223, 1307
Zsp2I ATGCAT 2 cut(s) 870, 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.