Rh5BG367900

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001648
Physical Location & Seq
Forward (+)
57707475 .. 57714527
7053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG367900.1

Sequence Viewer

Length: 1437 bp
ATGGCAAAGGGAGAAAATCGGTATGTTGCTTATATGGAAGATATGTATGAAGACAAAAGGGGTCAAAAAAAGGTCAAAGTGAGGTGGTTTCACCGTAATCAGGAAGTTAAGGGGGTAATTCCTCTGCAAAATCCGCACCCAAAGGAAGTTTTCATCACGCCATATGTGCAGGTCATTAGTGCAGAGTGTGTTGATGGTCCTGCAACAGTTTTAACTCGTGAACATTATGAAAAGTGTGTACTTGTGTTTCCTCAGGCTTTATTGGCCAAAGTACATCTTTGCTACAGGCAGTTTAAAAGTAAAAGGGTGAAGCCATTTGATTTGAGTAAGATGCATGGCTATTTTGTTCAGCCGATTCTCTCTTATTTGAGTCCCAACTTTTTACCAAATTCAGAGTGTATAAGTGGTAGTCTGATTGGAAAAGAAGATAAGTTGGGCCCAAGTGACTATGTAAAGCTGGGAACTAAGAGGACTAGAAATGGAAGGCCATGCCAGAGGGTTCCAACTAATCAAAACTCAAACTTTGGTTTTCTGGACAGGAGGTTACTTTCTTGGTATACCCCACTGTTTAAGGTTGATGAAAAGATAGAATTGCTATGCCAAGATAGTGGCATTCGGGGCTGCTGGTTTAGGTGTACAGTCTTGCAGACATCTCGAAAGCAGATTAGAGTCCAATACAATGATTTGCTAGATGAGGAAGGATGTGGCAATCTTGAGGAATGGATCCCTGCTTTTAGACTGGCTAAGCCTGATAAGATTGGCATGCGGCATCTAGGCCGTCCAATGATACGGCCAGCCCCCCCTGAGGTGCAAATGGACCTTCCTCTTGAGGTTGGAGCTGCAATTGATGCATGGTGGAGCGATGGCTGGTGGGAAGGGATTATAACTGGATTTGGCAGCTGTGATGATAATTTTCAAGTTTACTTTCCGGGGGAAAGCTTACTCTTGAACATGGACAAAAAGGATCTAAGAATATCTAGAGATTGGTTGGGGGACCAGTGGGTTGATATTGAGGCGAAGCCTGATGTCCTCTCAGCCATATCTTCAACAATTATCTCTTGCACTAGGCCCTTTGTGTCATCCAACATTGCCAAGGATGTTGAGGATGTTGATTGTGATGGTAATACTTTGTCATGTTCTGAACTTCCTTCTAGTTCTAGACATGAAAAAGATGAACTAGGCGCATCTCCCAGTTCTGATCATTTTCCTGAAAAAATGGACTTGGTCAATGATAAGAAGTCACCATCAATAAAGGACATTGGTAATGAAGGTGTTGATGGCAATGACAGTTCTGGTGATGTACATGTCCAAGGTAATGATGACGATGATGACAAAGATGACCACAATGGTGTTGATGAGGGGCAAGAAGGCATGGAGGTGTTTGAAACTCCAGGGAAGAGTCCTAAAGCTGTAGAAATCATGGCAGTGACATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet BAH

Protein Analysis

478

Amino Acids

53.97

Weight (kDa)

5.21

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 4 - 80 2.7e-08 BAH domain
Agenet PF05641 194 - 268 2.6e-17 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 884
Acc36I ACCTGC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 557
AciI CCGC 2 cut(s) 134, 766
AclWI GGATC 3 cut(s) 718, 731, 972
AcoI YGGCCR 2 cut(s) 264, 791
AcsI RAATTY 1 cut(s) 388
AfaI GTAC 4 cut(s) 240, 273, 637, 1302
AfiI CCNNNNNNNGG 2 cut(s) 100, 805
AflIII ACRYGT 1 cut(s) 1303
AgsI TTSAA 4 cut(s) 917, 949, 1047, 1385
AjnI CCWGG 1 cut(s) 1390
AleI CACNNNNGTG 1 cut(s) 1347
AluBI AGCT 5 cut(s) 457, 839, 900, 939, 1409
AluI AGCT 5 cut(s) 457, 839, 900, 939, 1409
AlwI GGATC 3 cut(s) 718, 731, 972
AoxI GGCC 6 cut(s) 264, 436, 485, 775, 791, 1067
ApaI GGGCCC 1 cut(s) 440
ApeKI GCWGC 3 cut(s) 621, 839, 897
ApoI RAATTY 1 cut(s) 388
AspLEI GCGC 1 cut(s) 1184
AspS9I GGNCC 6 cut(s) 197, 436, 437, 817, 994, 1068
AsuC2I CCSGG 1 cut(s) 930
AsuHPI GGTGA 4 cut(s) 83, 319, 1233, 1307
AvaII GGWCC 3 cut(s) 197, 817, 994
AxyI CCTNAGG 2 cut(s) 252, 804
BaeGI GKGCMC 1 cut(s) 440
BalI TGGCCA 1 cut(s) 266
BamHI GGATCC 1 cut(s) 723
BanII GRGCYC 1 cut(s) 440
BauI CACGAG 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 608, 826, 909
BccI CCATC 5 cut(s) 188, 857, 1112, 1252, 1271
BceAI ACGGC 2 cut(s) 762, 806
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciT130I CCWGG 1 cut(s) 1392
BclI TGATCA 1 cut(s) 1198
BcnI CCSGG 1 cut(s) 930
BfaI CTAG 8 cut(s) 474, 689, 773, 978, 1065, 1152, 1158, 1178
BfmI CTRYAG 2 cut(s) 283, 1410
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 4 cut(s) 622, 767, 840, 898
BlpI GCTNAGC 1 cut(s) 744
BlsI GCNGC 4 cut(s) 623, 768, 841, 899
Bme1390I CCNGG 2 cut(s) 930, 1392
Bme18I GGWCC 3 cut(s) 197, 817, 994
BmgT120I GGNCC 6 cut(s) 197, 436, 437, 817, 994, 1068
BmiI GGNNCC 4 cut(s) 438, 501, 725, 995
BmrFI CCNGG 2 cut(s) 930, 1392
BmrI ACTGGG 1 cut(s) 1185
BmsI GCATC 4 cut(s) 321, 778, 838, 1193
BmuI ACTGGG 1 cut(s) 1185
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 1374
Bpu1102I GCTNAGC 1 cut(s) 744
BpuEI CTTGAG 2 cut(s) 734, 848
BpuMI CCSGG 1 cut(s) 930
BsaJI CCNNGG 4 cut(s) 929, 1092, 1309, 1391
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 805
Bse1I ACTGG 4 cut(s) 744, 892, 997, 1191
Bse21I CCTNAGG 2 cut(s) 252, 804
Bse3DI GCAATG 2 cut(s) 1086, 1288
BseBI CCWGG 1 cut(s) 1392
BseDI CCNNGG 4 cut(s) 929, 1092, 1309, 1391
BseGI GGATG 4 cut(s) 707, 1079, 1102, 1111
BseLI CCNNNNNNNGG 2 cut(s) 100, 805
BseMI GCAATG 2 cut(s) 1086, 1288
BseMII CTCAG 3 cut(s) 266, 795, 1047
BseNI ACTGG 4 cut(s) 744, 892, 997, 1191
BseSI GKGCMC 1 cut(s) 440
BseXI GCAGC 3 cut(s) 608, 826, 909
BseYI CCCAGC 1 cut(s) 457
BsgI GTGCAG 2 cut(s) 188, 201
BshFI GGCC 6 cut(s) 266, 438, 487, 777, 793, 1069
BsiSI CCGG 1 cut(s) 929
BslFI GGGAC 2 cut(s) 357, 1007
BslI CCNNNNNNNGG 2 cut(s) 100, 805
BsmFI GGGAC 2 cut(s) 357, 1007
BsmI GAATGC 1 cut(s) 612
BsnI GGCC 6 cut(s) 266, 438, 487, 777, 793, 1069
Bsp120I GGGCCC 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 440
Bsp1407I TGTACA 2 cut(s) 635, 1300
Bsp143I GATC 3 cut(s) 723, 964, 1198
Bsp1720I GCTNAGC 1 cut(s) 744
BspACI CCGC 2 cut(s) 134, 766
BspANI GGCC 6 cut(s) 266, 438, 487, 777, 793, 1069
BspCNI CTCAG 3 cut(s) 265, 796, 1046
BspLI GGNNCC 4 cut(s) 438, 501, 725, 995
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 3 cut(s) 718, 731, 972
BsrDI GCAATG 2 cut(s) 1086, 1288
BsrGI TGTACA 2 cut(s) 635, 1300
BsrI ACTGG 4 cut(s) 744, 892, 997, 1191
BssECI CCNNGG 4 cut(s) 929, 1092, 1309, 1391
BssMI GATC 3 cut(s) 723, 964, 1198
BssNAI GTATAC 1 cut(s) 558
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 1092, 1309
Bst1107I GTATAC 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 1392
Bst4CI ACNGT 5 cut(s) 95, 208, 567, 640, 1289
Bst6I CTCTTC 1 cut(s) 1391
BstAPI GCANNNNNTGC 1 cut(s) 848
BstAUI TGTACA 2 cut(s) 635, 1300
BstC8I GCNNGC 2 cut(s) 764, 795
BstDEI CTNAG 6 cut(s) 252, 465, 744, 804, 968, 1033
BstF5I GGATG 4 cut(s) 707, 1079, 1102, 1111
BstHHI GCGC 1 cut(s) 1184
BstKTI GATC 3 cut(s) 726, 967, 1201
BstMBI GATC 3 cut(s) 723, 964, 1198
BstMWI GCNNNNNNNGC 5 cut(s) 133, 166, 263, 618, 848
BstNI CCWGG 1 cut(s) 1392
BstNSI RCATGY 2 cut(s) 766, 1307
BstSCI CCNGG 2 cut(s) 928, 1390
BstSFI CTRYAG 2 cut(s) 283, 1410
BstSLI GKGCMC 1 cut(s) 440
BstV1I GCAGC 3 cut(s) 608, 826, 909
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 2 cut(s) 723, 964
BstXI CCANNNNNNTGG 1 cut(s) 608
BstYI RGATCY 2 cut(s) 723, 964
BstZ17I GTATAC 1 cut(s) 558
Bsu36I CCTNAGG 2 cut(s) 252, 804
BsuRI GGCC 6 cut(s) 266, 438, 487, 777, 793, 1069
BtgZI GCGATG 1 cut(s) 876
BtsCI GGATG 4 cut(s) 707, 1079, 1102, 1111
BtsI GCAGTG 1 cut(s) 1431
BtsIMutI CAGTG 3 cut(s) 563, 1004, 1431
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 764, 795
CfoI GCGC 1 cut(s) 1184
Cfr13I GGNCC 6 cut(s) 197, 436, 437, 817, 994, 1068
Csp6I GTAC 4 cut(s) 239, 272, 636, 1301
CviQI GTAC 4 cut(s) 239, 272, 636, 1301
DdeI CTNAG 6 cut(s) 252, 465, 744, 804, 968, 1033
DpnI GATC 3 cut(s) 725, 966, 1200
DpnII GATC 3 cut(s) 723, 964, 1198
DraI TTTAAA 1 cut(s) 295
EaeI YGGCCR 2 cut(s) 264, 791
Eam1104I CTCTTC 1 cut(s) 1391
EarI CTCTTC 1 cut(s) 1391
Eco130I CCWWGG 2 cut(s) 1092, 1309
Eco24I GRGCYC 1 cut(s) 440
Eco47I GGWCC 3 cut(s) 197, 817, 994
Eco81I CCTNAGG 2 cut(s) 252, 804
EcoO109I RGGNCCY 1 cut(s) 1068
EcoRII CCWGG 1 cut(s) 1390
EcoT14I CCWWGG 2 cut(s) 1092, 1309
EcoT22I ATGCAT 2 cut(s) 336, 853
EcoT38I GRGCYC 1 cut(s) 440
ErhI CCWWGG 2 cut(s) 1092, 1309
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 2 cut(s) 357, 1007
FauNDI CATATG 1 cut(s) 163
FbaI TGATCA 1 cut(s) 1198
FblI GTMKAC 1 cut(s) 557
Fnu4HI GCNGC 4 cut(s) 622, 767, 840, 898
FokI GGATG 4 cut(s) 714, 1066, 1109, 1118
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 4 cut(s) 622, 767, 840, 898
FspBI CTAG 8 cut(s) 474, 689, 773, 978, 1065, 1152, 1158, 1178
GlaI GCGC 1 cut(s) 1183
GluI GCNGC 4 cut(s) 622, 767, 840, 898
GsaI CCCAGC 1 cut(s) 461
GsuI CTGGAG 1 cut(s) 1374
HaeIII GGCC 6 cut(s) 266, 438, 487, 777, 793, 1069
HapII CCGG 1 cut(s) 929
HhaI GCGC 1 cut(s) 1184
Hin6I GCGC 1 cut(s) 1182
HinP1I GCGC 1 cut(s) 1182
HindIII AAGCTT 1 cut(s) 937
HinfI GANTC 4 cut(s) 355, 370, 669, 1399
HpaII CCGG 1 cut(s) 929
HphI GGTGA 4 cut(s) 83, 319, 1233, 1307
Hpy166II GTNNAC 5 cut(s) 221, 239, 558, 636, 922
Hpy188I TCNGA 4 cut(s) 394, 414, 1141, 1198
Hpy8I GTNNAC 5 cut(s) 221, 239, 558, 636, 922
HpyAV CCTTC 7 cut(s) 477, 692, 830, 869, 1158, 1262, 1361
HpyCH4III ACNGT 5 cut(s) 95, 208, 567, 640, 1289
HpyF10VI GCNNNNNNNGC 5 cut(s) 133, 166, 263, 618, 848
HpyF3I CTNAG 6 cut(s) 252, 465, 744, 804, 968, 1033
HspAI GCGC 1 cut(s) 1182
Ksp22I TGATCA 1 cut(s) 1198
Kzo9I GATC 3 cut(s) 723, 964, 1198
LmnI GCTCC 2 cut(s) 836, 858
Lsp1109I GCAGC 3 cut(s) 608, 826, 909
LweI GCATC 4 cut(s) 321, 778, 838, 1193
MaeI CTAG 8 cut(s) 474, 689, 773, 978, 1065, 1152, 1158, 1178
MaeIII GTNAC 4 cut(s) 443, 543, 1239, 1426
MalI GATC 3 cut(s) 725, 966, 1200
MboI GATC 3 cut(s) 723, 964, 1198
MboII GAAGA 5 cut(s) 50, 62, 437, 1035, 1408
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 2 cut(s) 723, 964
MhlI GDGCHC 1 cut(s) 440
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 6 cut(s) 117, 388, 590, 843, 910, 1050
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 3 cut(s) 379, 678, 1408
MmeI TCCRAC 3 cut(s) 527, 814, 1107
Mox20I TGGCCA 1 cut(s) 266
Mph1103I ATGCAT 2 cut(s) 336, 853
MscI TGGCCA 1 cut(s) 266
MseI TTAA 4 cut(s) 108, 212, 294, 570
MslI CAYNNNNRTG 3 cut(s) 1347, 1376, 1424
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 900
MspI CCGG 1 cut(s) 929
MspR9I CCNGG 2 cut(s) 930, 1392
MunI CAATTG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 612
MvaI CCWGG 1 cut(s) 1392
MwoI GCNNNNNNNGC 5 cut(s) 133, 166, 263, 618, 848
NciI CCSGG 1 cut(s) 930
NdeI CATATG 1 cut(s) 163
NdeII GATC 3 cut(s) 723, 964, 1198
NlaIV GGNNCC 4 cut(s) 438, 501, 725, 995
NmuCI GTSAC 3 cut(s) 443, 1239, 1426
NsiI ATGCAT 2 cut(s) 336, 853
NspI RCATGY 2 cut(s) 766, 1307
OliI CACNNNNGTG 1 cut(s) 1347
PaeI GCATGC 1 cut(s) 766
PciI ACATGT 1 cut(s) 1303
PctI GAATGC 1 cut(s) 612
PfeI GAWTC 1 cut(s) 355
PflFI GACNNNGTC 1 cut(s) 1223
PkrI GCNGC 4 cut(s) 623, 768, 841, 899
PleI GAGTC 3 cut(s) 378, 677, 1407
PpsI GAGTC 3 cut(s) 378, 677, 1407
PscI ACATGT 1 cut(s) 1303
PsiI TTATAA 1 cut(s) 884
Psp6I CCWGG 1 cut(s) 1390
PspFI CCCAGC 1 cut(s) 457
PspGI CCWGG 1 cut(s) 1390
PspN4I GGNNCC 4 cut(s) 438, 501, 725, 995
PspOMI GGGCCC 1 cut(s) 436
PspPI GGNCC 6 cut(s) 197, 436, 437, 817, 994, 1068
PsuI RGATCY 2 cut(s) 723, 964
PsyI GACNNNGTC 1 cut(s) 1223
PvuII CAGCTG 1 cut(s) 900
RsaI GTAC 4 cut(s) 240, 273, 637, 1302
RsaNI GTAC 4 cut(s) 239, 272, 636, 1301
RseI CAYNNNNRTG 3 cut(s) 1347, 1376, 1424
SaqAI TTAA 4 cut(s) 108, 212, 294, 570
SatI GCNGC 4 cut(s) 622, 767, 840, 898
Sau3AI GATC 3 cut(s) 723, 964, 1198
Sau96I GGNCC 6 cut(s) 197, 436, 437, 817, 994, 1068
SchI GAGTC 3 cut(s) 379, 678, 1408
ScrFI CCNGG 2 cut(s) 930, 1392
SduI GDGCHC 1 cut(s) 440
SfaNI GCATC 4 cut(s) 321, 778, 838, 1193
SfcI CTRYAG 2 cut(s) 283, 1410
SinI GGWCC 3 cut(s) 197, 817, 994
SmiMI CAYNNNNRTG 3 cut(s) 1347, 1376, 1424
SmlI CTYRAG 2 cut(s) 713, 827
SmoI CTYRAG 2 cut(s) 713, 827
SphI GCATGC 1 cut(s) 766
Sse9I AATT 6 cut(s) 117, 388, 590, 843, 910, 1050
SsiI CCGC 2 cut(s) 134, 766
SspMI CTAG 8 cut(s) 474, 689, 773, 978, 1065, 1152, 1158, 1178
StyD4I CCNGG 2 cut(s) 928, 1390
StyI CCWWGG 2 cut(s) 1092, 1309
TaaI ACNGT 5 cut(s) 95, 208, 567, 640, 1289
TaqI TCGA 1 cut(s) 655
TasI AATT 6 cut(s) 117, 388, 590, 843, 910, 1050
TatI WGTACW 4 cut(s) 238, 271, 635, 1300
TauI GCSGC 1 cut(s) 769
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 4 cut(s) 108, 212, 294, 570
Tru9I TTAA 4 cut(s) 108, 212, 294, 570
TscAI CASTG 3 cut(s) 570, 1004, 1431
TseFI GTSAC 3 cut(s) 443, 1239, 1426
TseI GCWGC 3 cut(s) 621, 839, 897
Tsp45I GTSAC 3 cut(s) 443, 1239, 1426
TspDTI ATGAA 7 cut(s) 63, 142, 243, 594, 1179, 1188, 1281
TspRI CASTG 3 cut(s) 570, 1004, 1431
Tth111I GACNNNGTC 1 cut(s) 1223
VpaK11BI GGWCC 3 cut(s) 197, 817, 994
XapI RAATTY 1 cut(s) 388
XbaI TCTAGA 2 cut(s) 977, 1157
XceI RCATGY 2 cut(s) 766, 1307
XmiI GTMKAC 1 cut(s) 557
XspI CTAG 8 cut(s) 474, 689, 773, 978, 1065, 1152, 1158, 1178
Zsp2I ATGCAT 2 cut(s) 336, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.