Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8394963.1

Orthogroup ID

OG0001648

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1239

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8394963.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 947 bp

attcaccgtcaaatgaaacaacagaagctttatcgcttaatggagtcggtgctcgtcaaactgatcagatggttccaaggaaactgaaaggtcaaaattcacatattgaatggtctggtgttgcctggatttgtggcaagcagctgaagcactacccagcattttgcaggaatggaactactgtttctgtccattcctttgtcttcattagggctttagaaaaacattactaccttggttatgtggaagacatgtatgaagacaggaaagggaagaaaaaagttaaagtgcgatggtttcaccacagtaaggaagtggaggatgtaatccctgatctgaacgcacacccgagagaagtttttatcacacctcatgtacaggtgattagtgctgagtgtattgacggtcctgcaacagttttaactcctaagcattatgagaaatgtttggctagtgttgctcacagttcttcatctggagtccatatgtgctttagacagcttaagaaccatgaggttaggcccttcagtcttgctaagttgcgggggtattctaatcaagcaatcctttcttccttacattttccccaagtctccaagaaaatagtcaagtgtgatttgttatatgataaagatgaggaagagccaatacctggtgatcccctgagggtgaattgtaagagaaatagaagctatgaggagcatcagggacttgcatccggttattctagtatcagaaacttgcatacccagagtcagctgaaaaactgcgttccaacatacccaaagttgaaaataaaattatcaaggaaagcaattggagttgagactgttgtatctgttccccaatgtccagtgtcttttaaggttgatgagaagatagaactgctctgtcaagatagtggcattcgaggatgctggtttaggtgtaaggttttgcagacatct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet BAH

Protein Analysis

315

Amino Acids

35.73

Weight (kDa)

9.16

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55600 AT5G55600 AT5G55600
fragaria_vesca	FvH4_3g00540 FvH4_3g00540 FvH4_3g00540 FvH4_3g00540 FvH4_3g00540 FvH4_3g29480 FvH4_3g29480 FvH4_3g29480
malus_domestica	MD00G1057800.v1.1 MD03G1186700.v1.1 MD10G1336900.v1.1 MD11G1201800.v1.1
prunus_persica	Prupe.4G006500_v2.0.a1 Prupe.4G006500_v2.0.a1 Prupe.4G006500_v2.0.a1 Prupe.4G006500_v2.0.a1 Prupe.4G239800_v2.0.a1 Prupe.4G239800_v2.0.a1
pyrus_communis	pycom03g13890 pycom05g32630 pycom10g28640 pycom11g17430
rosa_chinensis	RchiOBHm_Chr5g0000741 RchiOBHm_Chr5g0054361
rosa_laevigata	RLG00000030891 RLG00000034926
rosa_multiflora	Rmu_co8288121.1_g000001 Rmu_co8324391.1_g000001 Rmu_co8332439.1_g000001 Rmu_co8394963.1_g000001 Rmu_sc0000255.1_g000004
rosa_roxburghii	Rroxscaffold_1G00026510 Rroxscaffold_1G00075490
rosa_rugosa	Rorug04G0386200 Rorug05G0285800
rosa_samantha	Rh5AG006100 Rh5AG356300 Rh5BG007900 Rh5BG367900 Rh5CG006600 Rh5CG391200 Rh5DG006600 Rh5DG382100
rosa_wichuraiana	Rw5G000620 Rw5G033470 Rw5G033640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	652
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	1 cut(s)	652
AcsI	RAATTY	1 cut(s)	96
AcuI	CTGAAG	2 cut(s)	166, 510
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	309, 652
AflII	CTTAAG	1 cut(s)	502
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	109, 792
AjnI	CCWGG	2 cut(s)	124, 651
AluBI	AGCT	5 cut(s)	28, 144, 501, 692, 759
AluI	AGCT	5 cut(s)	28, 144, 501, 692, 759
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	597, 820
AlwI	GGATC	1 cut(s)	652
Ama87I	CYCGRG	1 cut(s)	348
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	96
AspS9I	GGNCC	2 cut(s)	406, 521
AsuHPI	GGTGA	4 cut(s)	292, 393, 667, 681
AvaI	CYCGRG	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	406
AxyI	CCTNAGG	1 cut(s)	664
BaeI	ACNNNNGTAYC	2 cut(s)	818, 851
BarI	GAAGNNNNNNTAC	2 cut(s)	632, 664
BbsI	GAAGAC	3 cut(s)	195, 254, 266
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	2 cut(s)	63, 287
BciT130I	CCWGG	2 cut(s)	126, 653
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	597, 820
BfaI	CTAG	2 cut(s)	452, 728
BfrI	CTTAAG	1 cut(s)	502
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	2 cut(s)	126, 653
Bme18I	GGWCC	1 cut(s)	406
BmeT110I	CYCGRG	1 cut(s)	348
BmgT120I	GGNCC	2 cut(s)	406, 521
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	126, 653
BmsI	GCATC	3 cut(s)	711, 724, 904
BpiI	GAAGAC	3 cut(s)	195, 254, 266
BpmI	CTGGAG	1 cut(s)	497
Bpu10I	CCTNAGC	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	76, 234
BsaWI	WCCGGW	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 652
Bse1I	ACTGG	1 cut(s)	853
Bse21I	CCTNAGG	1 cut(s)	664
BseBI	CCWGG	2 cut(s)	126, 653
BseDI	CCNNGG	2 cut(s)	76, 234
BseGI	GGATG	3 cut(s)	327, 715, 919
BseLI	CCNNNNNNNGG	2 cut(s)	309, 652
BseMII	CTCAG	2 cut(s)	383, 655
BseNI	ACTGG	1 cut(s)	853
BseRI	GAGGAG	1 cut(s)	712
BseXI	GCAGC	1 cut(s)	153
BseYI	CCCAGC	1 cut(s)	156
BshFI	GGCC	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	719
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	2 cut(s)	309, 652
BsmAI	GTCTC	2 cut(s)	597, 820
BsmFI	GGGAC	1 cut(s)	722
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	1 cut(s)	522
BsoBI	CYCGRG	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	63, 333, 657
BspACI	CCGC	1 cut(s)	543
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	2 cut(s)	384, 656
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	652
BspQI	GCTCTTC	1 cut(s)	635
BspTI	CTTAAG	1 cut(s)	502
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	853
BssECI	CCNNGG	2 cut(s)	76, 234
BssMI	GATC	3 cut(s)	63, 333, 657
BssT1I	CCWWGG	2 cut(s)	76, 234
Bst2UI	CCWGG	2 cut(s)	126, 653
Bst4CI	ACNGT	7 cut(s)	8, 183, 307, 406, 417, 466, 831
Bst6I	CTCTTC	1 cut(s)	635
BstAFI	CTTAAG	1 cut(s)	502
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	4 cut(s)	392, 428, 536, 664
BstF5I	GGATG	3 cut(s)	327, 715, 919
BstKTI	GATC	3 cut(s)	66, 336, 660
BstMAI	GTCTC	2 cut(s)	597, 820
BstMBI	GATC	3 cut(s)	63, 333, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 457
BstNI	CCWGG	2 cut(s)	126, 653
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	124, 651
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	3 cut(s)	195, 254, 266
Bsu36I	CCTNAGG	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	327, 715, 919
BtsIMutI	CAGTG	1 cut(s)	860
Cac8I	GCNNGC	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	406, 521
CsiI	ACCWGGT	1 cut(s)	651
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	3 cut(s)	252, 373, 511
CviJI	RGCY	9 cut(s)	28, 144, 214, 451, 501, 522, 645, 692, 759
CviKI_1	RGCY	9 cut(s)	28, 144, 214, 451, 501, 522, 645, 692, 759
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	4 cut(s)	392, 428, 536, 664
DpnI	GATC	3 cut(s)	65, 335, 659
DpnII	GATC	3 cut(s)	63, 333, 657
Eam1104I	CTCTTC	1 cut(s)	635
EarI	CTCTTC	1 cut(s)	635
Eco130I	CCWWGG	2 cut(s)	76, 234
Eco47I	GGWCC	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	166, 510
Eco81I	CCTNAGG	1 cut(s)	664
Eco88I	CYCGRG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	124, 651
EcoT14I	CCWWGG	2 cut(s)	76, 234
ErhI	CCWWGG	2 cut(s)	76, 234
FaeI	CATG	3 cut(s)	255, 376, 514
FalI	AAGNNNNNCTT	2 cut(s)	551, 583
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	3 cut(s)	251, 372, 510
FauI	CCCGC	1 cut(s)	536
FauNDI	CATATG	1 cut(s)	485
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	3 cut(s)	334, 702, 926
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	2 cut(s)	452, 728
GluI	GCNGC	1 cut(s)	142
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	1 cut(s)	719
Hin1II	CATG	3 cut(s)	255, 376, 514
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	3 cut(s)	44, 479, 753
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	4 cut(s)	292, 393, 667, 681
Hpy188I	TCNGA	3 cut(s)	68, 338, 736
Hpy188III	TCNNGA	2 cut(s)	476, 895
HpyAV	CCTTC	1 cut(s)	534
HpyCH4III	ACNGT	7 cut(s)	8, 183, 307, 406, 417, 466, 831
HpyCH4V	TGCA	5 cut(s)	167, 412, 715, 744, 939
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 457
HpyF3I	CTNAG	4 cut(s)	392, 428, 536, 664
Hsp92II	CATG	3 cut(s)	255, 376, 514
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 333, 657
LguI	GCTCTTC	1 cut(s)	635
LmnI	GCTCC	1 cut(s)	699
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	3 cut(s)	711, 724, 904
MabI	ACCWGGT	1 cut(s)	651
MaeI	CTAG	2 cut(s)	452, 728
MalI	GATC	3 cut(s)	65, 335, 659
MboI	GATC	3 cut(s)	63, 333, 657
MboII	GAAGA	8 cut(s)	195, 259, 271, 285, 461, 563, 652, 888
MfeI	CAATTG	1 cut(s)	815
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	4 cut(s)	96, 672, 799, 815
MlyI	GAGTC	3 cut(s)	53, 488, 762
MmeI	TCCRAC	1 cut(s)	799
MnlI	CCTC	7 cut(s)	312, 380, 507, 630, 659, 690, 904
MseI	TTAA	5 cut(s)	38, 284, 421, 503, 863
MspA1I	CMGCKG	2 cut(s)	144, 759
MspCI	CTTAAG	1 cut(s)	502
MspI	CCGG	1 cut(s)	719
MspR9I	CCNGG	2 cut(s)	126, 653
MunI	CAATTG	1 cut(s)	815
Mva1269I	GAATGC	1 cut(s)	905
MvaI	CCWGG	2 cut(s)	126, 653
MwoI	GCNNNNNNNGC	2 cut(s)	147, 457
NdeI	CATATG	1 cut(s)	485
NdeII	GATC	3 cut(s)	63, 333, 657
NlaIII	CATG	3 cut(s)	255, 376, 514
NlaIV	GGNNCC	1 cut(s)	74
NspI	RCATGY	1 cut(s)	255
PciI	ACATGT	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	635
PctI	GAATGC	1 cut(s)	905
PflMI	CCANNNNNTGG	1 cut(s)	652
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	3 cut(s)	52, 487, 761
PpsI	GAGTC	3 cut(s)	52, 487, 761
PscI	ACATGT	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	124, 651
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	2 cut(s)	124, 651
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	2 cut(s)	406, 521
PvuII	CAGCTG	2 cut(s)	144, 759
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SapI	GCTCTTC	1 cut(s)	635
SaqAI	TTAA	5 cut(s)	38, 284, 421, 503, 863
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	3 cut(s)	63, 333, 657
Sau96I	GGNCC	2 cut(s)	406, 521
SchI	GAGTC	3 cut(s)	53, 488, 762
ScrFI	CCNGG	2 cut(s)	126, 653
SduI	GDGCHC	1 cut(s)	54
SexAI	ACCWGGT	1 cut(s)	651
SfaNI	GCATC	3 cut(s)	711, 724, 904
SinI	GGWCC	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	4 cut(s)	96, 672, 799, 815
SsiI	CCGC	1 cut(s)	543
SspMI	CTAG	2 cut(s)	452, 728
StyD4I	CCNGG	2 cut(s)	124, 651
StyI	CCWWGG	2 cut(s)	76, 234
TaaI	ACNGT	7 cut(s)	8, 183, 307, 406, 417, 466, 831
TaqI	TCGA	1 cut(s)	909
TasI	AATT	4 cut(s)	96, 672, 799, 815
TatI	WGTACW	1 cut(s)	375
Tru1I	TTAA	5 cut(s)	38, 284, 421, 503, 863
Tru9I	TTAA	5 cut(s)	38, 284, 421, 503, 863
TscAI	CASTG	1 cut(s)	860
TseI	GCWGC	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	29, 195, 272, 461
TspRI	CASTG	1 cut(s)	860
Van91I	CCANNNNNTGG	1 cut(s)	652
Vha464I	CTTAAG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	406
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	255
XspI	CTAG	2 cut(s)	452, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.