Rmu_co8332439.1_g000001

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8332439.1
OG0001648
Physical Location & Seq
Reverse (-)
18 .. 784
767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8332439.1_g000001.1.cds

Sequence Viewer

Length: 612 bp
atgagatgctcaggccgcctgacaattcggccctgccaccccagtgattctgtcatgtcttctcttgaggttggagtaccagttgatgcatggtggagtgatggctggtgggaaggtgttgttgctggagtggacgtctctagaactgctatacaagtctacttccctggtgaggagaagcttctgactttccagagacaggatattagggcttcgagagagtgggttgacaacaaatgggttcatgtaaaggcaaagcctgatatactgttatatatagctgaaaatgtcagttctagcattaaaatcacgactccctgtgctagtgctatggcagagtggtgttgctccaaagttcatacatcttctaaacttgaagtttttgaagaaaaaccagaattacgaaatttagttccaatgggtgatgagttggaaaatgagaagagagtcaatttgaggaagcagccatgtaccagtaatgaagatgaaaatgacagttctagtgatggcggtacttgcaacaaggatgattctattttcgaggaagaagttgatcctgcctatgagaaatgtgaaacaccagaagccatggaagtggctgctcaggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet BAH

Protein Analysis

203

Amino Acids

22.83

Weight (kDa)

4.61

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
AccI GTMKAC 1 cut(s) 159
AciI CCGC 2 cut(s) 16, 510
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 1 cut(s) 406
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 3 cut(s) 78, 472, 514
AfiI CCNNNNNNNGG 2 cut(s) 172, 199
AgsI TTSAA 2 cut(s) 377, 386
AjnI CCWGG 1 cut(s) 166
AleI CACNNNNGTG 1 cut(s) 42
AluBI AGCT 2 cut(s) 181, 281
AluI AGCT 2 cut(s) 181, 281
Alw26I GTCTC 2 cut(s) 142, 190
AlwI GGATC 1 cut(s) 548
AoxI GGCC 2 cut(s) 13, 29
ApeKI GCWGC 2 cut(s) 463, 599
ApoI RAATTY 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 182, 434
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 475, 586
BccI CCATC 2 cut(s) 95, 500
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 142, 190
BfaI CTAG 4 cut(s) 141, 297, 324, 501
BisI GCNGC 3 cut(s) 16, 464, 600
BlsI GCNGC 3 cut(s) 17, 465, 601
Bme1390I CCNGG 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 147
Bpu10I CCTNAGC 2 cut(s) 10, 603
BpuEI CTTGAG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 166, 588
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 199
Bse1I ACTGG 3 cut(s) 42, 80, 474
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 166, 588
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 2 cut(s) 172, 199
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 3 cut(s) 42, 80, 474
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 475, 586
BshFI GGCC 2 cut(s) 15, 31
BslI CCNNNNNNNGG 2 cut(s) 172, 199
BsmAI GTCTC 2 cut(s) 142, 190
BsmBI CGTCTC 1 cut(s) 142
BsnI GGCC 2 cut(s) 15, 31
Bsp143I GATC 1 cut(s) 553
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 2 cut(s) 16, 510
BspANI GGCC 2 cut(s) 15, 31
BspCNI CTCAG 1 cut(s) 23
BspPI GGATC 1 cut(s) 548
BsrI ACTGG 3 cut(s) 42, 80, 474
BssECI CCNNGG 2 cut(s) 166, 588
BssMI GATC 1 cut(s) 553
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 588
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 270, 497
Bst6I CTCTTC 1 cut(s) 437
BstACI GRCGYC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 10, 603
BstDSI CCRYGG 1 cut(s) 588
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 2 cut(s) 142, 190
BstMBI GATC 1 cut(s) 553
BstMWI GCNNNNNNNGC 2 cut(s) 15, 516
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 475, 586
BstV2I GAAGAC 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 595
BsuRI GGCC 2 cut(s) 15, 31
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 30
Csp6I GTAC 3 cut(s) 77, 471, 513
CviAII CATG 5 cut(s) 55, 90, 245, 468, 589
CviQI GTAC 3 cut(s) 77, 471, 513
DdeI CTNAG 2 cut(s) 10, 603
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 588
EcoT22I ATGCAT 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 588
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 5 cut(s) 58, 93, 248, 471, 592
FatI CATG 5 cut(s) 54, 89, 244, 467, 588
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 16, 464, 600
FokI GGATG 1 cut(s) 539
Fsp4HI GCNGC 3 cut(s) 16, 464, 600
FspBI CTAG 4 cut(s) 141, 297, 324, 501
GluI GCNGC 3 cut(s) 16, 464, 600
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 2 cut(s) 15, 31
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 5 cut(s) 58, 93, 248, 471, 592
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 4 cut(s) 47, 313, 447, 530
HphI GGTGA 2 cut(s) 182, 434
Hpy166II GTNNAC 3 cut(s) 133, 160, 229
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 6 cut(s) 65, 141, 193, 216, 310, 605
Hpy8I GTNNAC 3 cut(s) 133, 160, 229
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 2 cut(s) 270, 497
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 89, 519
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 516
HpyF3I CTNAG 2 cut(s) 10, 603
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 5 cut(s) 58, 93, 248, 471, 592
Kzo9I GATC 1 cut(s) 553
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 2 cut(s) 475, 586
LweI GCATC 1 cut(s) 76
MaeI CTAG 4 cut(s) 141, 297, 324, 501
MaeII ACGT 1 cut(s) 135
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MboII GAAGA 6 cut(s) 51, 357, 398, 454, 494, 557
MluCI AATT 4 cut(s) 24, 398, 406, 451
MlyI GAGTC 2 cut(s) 307, 456
MmeI TCCRAC 2 cut(s) 52, 411
MnlI CCTC 4 cut(s) 61, 166, 450, 535
Mph1103I ATGCAT 1 cut(s) 91
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 2 cut(s) 42, 593
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 15, 516
NcoI CCATGG 1 cut(s) 588
NdeII GATC 1 cut(s) 553
NlaIII CATG 5 cut(s) 58, 93, 248, 471, 592
NsiI ATGCAT 1 cut(s) 91
OliI CACNNNNGTG 1 cut(s) 42
PfeI GAWTC 2 cut(s) 47, 530
PkrI GCNGC 3 cut(s) 17, 465, 601
PleI GAGTC 2 cut(s) 307, 455
PpsI GAGTC 2 cut(s) 307, 455
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 1 cut(s) 30
RsaI GTAC 3 cut(s) 78, 472, 514
RsaNI GTAC 3 cut(s) 77, 471, 513
RseI CAYNNNNRTG 2 cut(s) 42, 593
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 16, 464, 600
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 2 cut(s) 307, 456
ScrFI CCNGG 1 cut(s) 168
SetI ASST 5 cut(s) 72, 118, 138, 183, 283
SfaNI GCATC 1 cut(s) 76
SmiMI CAYNNNNRTG 2 cut(s) 42, 593
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 4 cut(s) 24, 398, 406, 451
SsiI CCGC 2 cut(s) 16, 510
SspMI CTAG 4 cut(s) 141, 297, 324, 501
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 2 cut(s) 270, 497
TaiI ACGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 215, 540
TasI AATT 4 cut(s) 24, 398, 406, 451
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 2 cut(s) 47, 530
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 49
TseI GCWGC 2 cut(s) 463, 599
TspDTI ATGAA 4 cut(s) 233, 347, 495, 501
TspRI CASTG 1 cut(s) 49
XapI RAATTY 1 cut(s) 406
XbaI TCTAGA 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 87
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 4 cut(s) 141, 297, 324, 501
ZraI GACGTC 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.