pycom06g04570

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0007755
Physical Location & Seq
Forward (+)
5916233 .. 5916974
742 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGGCGACAGCGCCAGAGAAGCCGCCGCTGCACAACTTCCCACTCACATTCTTGAAATGGGGGACTAAGAACGCCACTGCCAACAACCACAACCGCTACCGCCGACCCGCCTCCGAGCCAAACTCCGAATCAGACCGATACAACCACGTCGGGTCCTCCCGCGCCGATCGCCGCCGATTATCGGTGATCCCGTGCTCGGAAAACAAGCGTCGCAGGAGCGAGGAGCGGGAGAGCGATCAAGAGGAGGAGGAAGCTGAGGTGCTACTTCAGAAGCCCTGGAATTTGAGGCCCAGAAGACCTCCGGCGACGGCGTCCTTTCAAAAGGCGAGTGGCCCTAACGCTGCGGCTACCGCAAACCGGGAAGCGCAGGAACCAGAGGGGCCAAACCGGAGTCAGAGCGAAATGATGCAGCAGCAGCAGCCGAAGTCGATGAGGTTGAGGGGTCTGGCGGAGGGGCAGAGTGTGGAGAAGAAGAAGAAGGTGAAGAGCAAGTTCTGGATCGCTTTGTCGAAGGAGGAGATTGAAGAGGACGTGTTCGTGATGACCGGGTCGAGGCCCCCCAGAAGGCCCAAGAAGCGGCCCAAGAATGTTCAGAAACAACTCGATTATTTTTCCTGGGTTGTGGCTGGTTGGTGTCACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

215

Amino Acids

24.69

Weight (kDa)

9.97

Isoelectric Point (pI)

85.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 169 - 204 3.6e-19 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 226
AccII CGCG 1 cut(s) 162
AclWI GGATC 2 cut(s) 181, 506
AcsI RAATTY 1 cut(s) 280
AcuI CTGAAG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 311
AfiI CCNNNNNNNGG 6 cut(s) 181, 196, 357, 552, 564, 576
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 3 cut(s) 55, 320, 524
AjiI CACGTC 2 cut(s) 148, 532
AjnI CCWGG 2 cut(s) 275, 614
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw21I GWGCWC 1 cut(s) 197
AlwI GGATC 2 cut(s) 181, 506
AoxI GGCC 6 cut(s) 287, 331, 380, 554, 566, 578
ApeKI GCWGC 6 cut(s) 28, 341, 409, 412, 415, 418
ApoI RAATTY 1 cut(s) 280
AspLEI GCGC 3 cut(s) 13, 164, 367
AspS9I GGNCC 7 cut(s) 153, 288, 332, 380, 555, 567, 579
AsuC2I CCSGG 2 cut(s) 359, 547
AsuHPI GGTGA 2 cut(s) 196, 493
AvaII GGWCC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 6 cut(s) 15, 328, 421, 424, 427, 430
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 2 cut(s) 277, 616
BcnI CCSGG 2 cut(s) 359, 547
BfoI RGCGCY 1 cut(s) 14
Bme1390I CCNGG 4 cut(s) 277, 359, 547, 616
Bme18I GGWCC 1 cut(s) 153
BmgBI CACGTC 2 cut(s) 148, 532
BmgT120I GGNCC 7 cut(s) 153, 288, 332, 380, 555, 567, 579
BmiI GGNNCC 4 cut(s) 154, 372, 381, 557
BmrFI CCNGG 4 cut(s) 277, 359, 547, 616
BmsI GCATC 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 301
BplI GAGNNNNNCTC 2 cut(s) 107, 139
Bpu10I CCTNAGC 1 cut(s) 255
BpuMI CCSGG 2 cut(s) 359, 547
BsaHI GRCGYC 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 275, 615
BsaWI WCCGGW 1 cut(s) 387
Bsc4I CCNNNNNNNGG 6 cut(s) 181, 196, 357, 552, 564, 576
BseBI CCWGG 2 cut(s) 277, 616
BseDI CCNNGG 2 cut(s) 275, 615
BseLI CCNNNNNNNGG 6 cut(s) 181, 196, 357, 552, 564, 576
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 4 cut(s) 236, 257, 260, 530
BseXI GCAGC 6 cut(s) 15, 328, 421, 424, 427, 430
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 162
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 6 cut(s) 289, 333, 382, 556, 568, 580
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 4 cut(s) 302, 358, 388, 546
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 6 cut(s) 181, 196, 357, 552, 564, 576
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 6 cut(s) 289, 333, 382, 556, 568, 580
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 4 cut(s) 166, 186, 235, 498
BspANI GGCC 6 cut(s) 289, 333, 382, 556, 568, 580
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 4 cut(s) 154, 372, 381, 557
BspPI GGATC 2 cut(s) 181, 506
BspQI GCTCTTC 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 275, 615
BssMI GATC 4 cut(s) 166, 186, 235, 498
BssNI GRCGYC 1 cut(s) 311
Bst2UI CCWGG 2 cut(s) 277, 616
Bst6I CTCTTC 2 cut(s) 479, 519
BstACI GRCGYC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 66, 255
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 3 cut(s) 13, 164, 367
BstKTI GATC 4 cut(s) 169, 189, 238, 501
BstMBI GATC 4 cut(s) 166, 186, 235, 498
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 7 cut(s) 19, 28, 168, 350, 415, 418, 574
BstNI CCWGG 2 cut(s) 277, 616
BstSCI CCNGG 4 cut(s) 275, 357, 545, 614
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 6 cut(s) 15, 328, 421, 424, 427, 430
BstV2I GAAGAC 1 cut(s) 301
BsuRI GGCC 6 cut(s) 289, 333, 382, 556, 568, 580
BtrI CACGTC 2 cut(s) 148, 532
BtsI GCAGTG 2 cut(s) 75, 637
BtsIMutI CAGTG 2 cut(s) 75, 637
CfoI GCGC 3 cut(s) 13, 164, 367
Cfr13I GGNCC 7 cut(s) 153, 288, 332, 380, 555, 567, 579
CseI GACGC 2 cut(s) 197, 300
DdeI CTNAG 2 cut(s) 66, 255
DpnI GATC 4 cut(s) 168, 188, 237, 500
DpnII GATC 4 cut(s) 166, 186, 235, 498
Eam1104I CTCTTC 2 cut(s) 479, 519
EarI CTCTTC 2 cut(s) 479, 519
EciI GGCGGA 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 251
EcoO109I RGGNCCY 2 cut(s) 153, 555
EcoRII CCWGG 2 cut(s) 275, 614
FaqI GGGAC 1 cut(s) 76
FauI CCCGC 3 cut(s) 115, 167, 219
GlaI GCGC 3 cut(s) 12, 163, 366
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 6 cut(s) 289, 333, 382, 556, 568, 580
HapII CCGG 4 cut(s) 302, 358, 388, 546
HgaI GACGC 2 cut(s) 197, 300
HhaI GCGC 3 cut(s) 13, 164, 367
Hin1I GRCGYC 1 cut(s) 311
Hin6I GCGC 3 cut(s) 11, 162, 365
HinP1I GCGC 3 cut(s) 11, 162, 365
HinfI GANTC 2 cut(s) 128, 391
HpaII CCGG 4 cut(s) 302, 358, 388, 546
HphI GGTGA 2 cut(s) 196, 493
Hpy188I TCNGA 7 cut(s) 115, 127, 133, 199, 270, 396, 594
Hpy188III TCNNGA 4 cut(s) 52, 239, 496, 538
Hpy99I CGWCG 3 cut(s) 152, 213, 310
HpyAV CCTTC 3 cut(s) 472, 505, 558
HpyCH4IV ACGT 2 cut(s) 147, 531
HpyCH4V TGCA 2 cut(s) 31, 409
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 28, 168, 350, 415, 418, 574
HpyF3I CTNAG 2 cut(s) 66, 255
HpySE526I ACGT 2 cut(s) 147, 531
Hsp92I GRCGYC 1 cut(s) 311
HspAI GCGC 3 cut(s) 11, 162, 365
Kzo9I GATC 4 cut(s) 166, 186, 235, 498
LguI GCTCTTC 1 cut(s) 479
LmnI GCTCC 2 cut(s) 216, 223
Lsp1109I GCAGC 6 cut(s) 15, 328, 421, 424, 427, 430
LweI GCATC 1 cut(s) 396
MaeII ACGT 2 cut(s) 147, 531
MaeIII GTNAC 1 cut(s) 635
MalI GATC 4 cut(s) 168, 188, 237, 500
MbiI CCGCTC 1 cut(s) 226
MboI GATC 4 cut(s) 166, 186, 235, 498
MboII GAAGA 6 cut(s) 306, 481, 484, 487, 496, 536
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 280
MlyI GAGTC 1 cut(s) 400
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 4 cut(s) 302, 358, 388, 546
MspR9I CCNGG 4 cut(s) 277, 359, 547, 616
MvaI CCWGG 2 cut(s) 277, 616
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 7 cut(s) 19, 28, 168, 350, 415, 418, 574
NciI CCSGG 2 cut(s) 359, 547
NdeII GATC 4 cut(s) 166, 186, 235, 498
NlaIV GGNNCC 4 cut(s) 154, 372, 381, 557
NmuCI GTSAC 1 cut(s) 635
PciSI GCTCTTC 1 cut(s) 479
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PfeI GAWTC 1 cut(s) 128
PflFI GACNNNGTC 2 cut(s) 310, 547
Ple19I CGATCG 1 cut(s) 169
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 275, 614
PspGI CCWGG 2 cut(s) 275, 614
PspN4I GGNNCC 4 cut(s) 154, 372, 381, 557
PspPI GGNCC 7 cut(s) 153, 288, 332, 380, 555, 567, 579
PspPPI RGGWCCY 1 cut(s) 153
PsyI GACNNNGTC 2 cut(s) 310, 547
PvuI CGATCG 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 479
Sau3AI GATC 4 cut(s) 166, 186, 235, 498
Sau96I GGNCC 7 cut(s) 153, 288, 332, 380, 555, 567, 579
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 4 cut(s) 277, 359, 547, 616
SduI GDGCHC 1 cut(s) 197
SetI ASST 7 cut(s) 150, 256, 261, 301, 437, 483, 534
SfaNI GCATC 1 cut(s) 396
SinI GGWCC 1 cut(s) 153
Sse9I AATT 1 cut(s) 280
StyD4I CCNGG 4 cut(s) 275, 357, 545, 614
TaiI ACGT 2 cut(s) 150, 534
TaqI TCGA 4 cut(s) 428, 509, 551, 603
TaqII GACCGA 1 cut(s) 150
TasI AATT 1 cut(s) 280
TauI GCSGC 5 cut(s) 25, 28, 174, 347, 580
TfiI GAWTC 1 cut(s) 128
TscAI CASTG 2 cut(s) 82, 644
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 6 cut(s) 28, 341, 409, 412, 415, 418
Tsp45I GTSAC 1 cut(s) 635
TspRI CASTG 2 cut(s) 82, 644
Tth111I GACNNNGTC 2 cut(s) 310, 547
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.