Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010364

Physical Location & Seq

Genomic Coordinates Reverse (-)

10714225 .. 10716739

Gene Structure 2515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCATTTCTGAGGTCAGTGGCTACGACTACTGCCATAGCAGCTGCTTCTGCGTTTCCTGCCGCCGTTGTCCTTTCTTCCCTCTCTCCGTCCTCCTCCTCCTCCTTTGTTTCTTTTCAATTTCGATTCCCAAAACCCCAAAACAGAGCCTTTCTCTCCTCCGCGCCGTCTCTGCTCAACCCAAACCCTCCGTTCCTCGCTACAAGCTTCGCCCAATCGTCCTCGGCTACCCAGATGGACGCGCCCGCATCGGAGCAAAAGCCATCCTTTCAGAGTGATGGTGCGTTGCCAGAGCTACTGACAGAGTACATGGTGGATATGAAATGTGACGGTTGTGTTAAGTCTGTCAAGAACAAGTTAGATACTGTTGAGGGGGTAAAAAGTGTAGAGGTAGACCTCAACAGTCAAGTGGTTAGGGTTCTGGGTTCAACGCCTTTGAAGACCATGACTGAAGCTTTGGAGCAGACGGGGCGAAAAGTGAGATTAATTGGGCAGGGGATCCCTGAAGATTTTTTGGTTTCTGCGGCTGTTTCTGAATTTAAAGGTCCAGATGTGTTTGGTGTGGTTCGTTTAGCTCAGGTTAATATGGAATTGGCTAGGATCGAGGCCAACTTTAGTGGGTTGACGCCTGGGAAACATGGTTGGTCGATCAATGAATTTGGTGATTTAACAGATGGAGCTAAAAGCACTGGAAAAGTGTTTAAACCATCAAATGAAGCAAACGAGCCGCTTGGTGACCTGGGAACACTGGAAAGTGATGAGAGTGGTAATGCCTTCTTCTCTGGGGTCAAAGAGAAGCTGAGAGTTGCTCGATCTTATTGGGAGGTCAATAGCAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006878 GO:0008047 GO:0008150 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016530 GO:0016531 GO:0016532 GO:0019725 GO:0030003 GO:0030234 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050790 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0098771 GO:0098772 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

HMA Sod_Cu

Protein Analysis

281

Amino Acids

29.87

Weight (kDa)

5.25

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	104 - 159	2.6e-12	Heavy-metal-associated domain
Sod_Cu	PF00080	186 - 270	1.6e-13	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12520 AT1G12520 AT1G12520
fragaria_vesca	FvH4_5g01090
malus_domestica	MD00G1069800.v1.1 MD04G1072900.v1.1
prunus_persica	Prupe.5G084900_v2.0.a1 Prupe.5G084900_v2.0.a1
pyrus_communis	pycom04g06600 pycom06g06690
rosa_chinensis	RchiOBHm_Chr7g0200231
rosa_laevigata	RLG00000003742
rosa_multiflora	Rmu_sc0019284.1_g000001 Rmu_sc0025955.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256210
rosa_rugosa	Rorug07G0058600
rosa_samantha	Rh7AG184100 Rh7BG186800 Rh7CG194500 Rh7DG188200
rosa_wichuraiana	Rw7G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	2 cut(s)	164, 242
AciI	CCGC	5 cut(s)	63, 162, 246, 524, 728
AclWI	GGATC	3 cut(s)	493, 506, 608
AcsI	RAATTY	2 cut(s)	536, 656
AcuI	CTGAAG	2 cut(s)	471, 525
AcyI	GRCGYC	1 cut(s)	626
AfaI	GTAC	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	119, 429, 439
AjnI	CCWGG	2 cut(s)	628, 738
AluBI	AGCT	7 cut(s)	44, 207, 295, 455, 575, 680, 799
AluI	AGCT	7 cut(s)	44, 207, 295, 455, 575, 680, 799
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	3 cut(s)	493, 506, 608
AoxI	GGCC	1 cut(s)	606
ApeKI	GCWGC	2 cut(s)	41, 44
ApoI	RAATTY	2 cut(s)	536, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	439, 471
AseI	ATTAAT	1 cut(s)	485
AspLEI	GCGC	2 cut(s)	166, 244
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	674, 746
AvaII	GGWCC	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	31, 53
BccI	CCATC	5 cut(s)	229, 271, 272, 668, 715
BceAI	ACGGC	2 cut(s)	50, 151
BciT130I	CCWGG	2 cut(s)	630, 740
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	597
BisI	GCNGC	5 cut(s)	42, 45, 63, 525, 728
BlsI	GCNGC	5 cut(s)	43, 46, 64, 526, 729
Bme1390I	CCNGG	2 cut(s)	630, 740
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	500
BmrFI	CCNGG	2 cut(s)	630, 740
BmsI	GCATC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	446
BplI	GAGNNNNNCTC	4 cut(s)	138, 170, 793, 825
Bpu10I	CCTNAGC	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	626
BsaJI	CCNNGG	3 cut(s)	222, 629, 739
Bse1I	ACTGG	2 cut(s)	694, 753
BseBI	CCWGG	2 cut(s)	630, 740
BseDI	CCNNGG	3 cut(s)	222, 629, 739
BseGI	GGATG	1 cut(s)	263
BseMII	CTCAG	2 cut(s)	590, 791
BseNI	ACTGG	2 cut(s)	694, 753
BseRI	GAGGAG	4 cut(s)	85, 88, 91, 148
BseXI	GCAGC	2 cut(s)	31, 53
Bsh1236I	CGCG	2 cut(s)	164, 242
BshFI	GGCC	1 cut(s)	608
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	608
Bsp143I	GATC	4 cut(s)	498, 600, 648, 812
BspACI	CCGC	5 cut(s)	63, 162, 246, 524, 728
BspANI	GGCC	1 cut(s)	608
BspCNI	CTCAG	2 cut(s)	589, 792
BspFNI	CGCG	2 cut(s)	164, 242
BspLI	GGNNCC	1 cut(s)	500
BspPI	GGATC	3 cut(s)	493, 506, 608
BsrI	ACTGG	2 cut(s)	694, 753
BssECI	CCNNGG	3 cut(s)	222, 629, 739
BssMI	GATC	4 cut(s)	498, 600, 648, 812
BssNI	GRCGYC	1 cut(s)	626
Bst2UI	CCWGG	2 cut(s)	630, 740
Bst4CI	ACNGT	3 cut(s)	332, 367, 404
BstACI	GRCGYC	1 cut(s)	626
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	11, 576, 800
BstEII	GGTNACC	1 cut(s)	734
BstF5I	GGATG	1 cut(s)	263
BstFNI	CGCG	2 cut(s)	164, 242
BstHHI	GCGC	2 cut(s)	166, 244
BstKTI	GATC	4 cut(s)	501, 603, 651, 815
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	4 cut(s)	498, 600, 648, 812
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 50, 59, 172, 469
BstNI	CCWGG	2 cut(s)	630, 740
BstPI	GGTNACC	1 cut(s)	734
BstSCI	CCNGG	2 cut(s)	628, 738
BstUI	CGCG	2 cut(s)	164, 242
BstV1I	GCAGC	2 cut(s)	31, 53
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	608
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	3 cut(s)	24, 687, 746
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	2 cut(s)	166, 244
Cfr13I	GGNCC	1 cut(s)	545
CseI	GACGC	2 cut(s)	248, 634
Csp6I	GTAC	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviAII	CATG	3 cut(s)	310, 445, 638
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	3 cut(s)	11, 576, 800
DpnI	GATC	4 cut(s)	500, 602, 650, 814
DpnII	GATC	4 cut(s)	498, 600, 648, 812
DraI	TTTAAA	2 cut(s)	541, 703
Eco47I	GGWCC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	471, 525
Eco91I	GGTNACC	1 cut(s)	734
EcoO65I	GGTNACC	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	628, 738
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	3 cut(s)	313, 448, 641
FaiI	YATR	8 cut(s)	38, 311, 320, 446, 587, 639, 839, 841
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	3 cut(s)	309, 444, 637
FauI	CCCGC	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	5 cut(s)	42, 45, 63, 525, 728
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	5 cut(s)	42, 45, 63, 525, 728
FspBI	CTAG	1 cut(s)	597
GlaI	GCGC	2 cut(s)	165, 243
GluI	GCNGC	5 cut(s)	42, 45, 63, 525, 728
HaeIII	GGCC	1 cut(s)	608
HgaI	GACGC	2 cut(s)	248, 634
HhaI	GCGC	2 cut(s)	166, 244
Hin1I	GRCGYC	1 cut(s)	626
Hin1II	CATG	3 cut(s)	313, 448, 641
Hin6I	GCGC	2 cut(s)	164, 242
HinP1I	GCGC	2 cut(s)	164, 242
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HindIII	AAGCTT	2 cut(s)	205, 453
HinfI	GANTC	1 cut(s)	126
HphI	GGTGA	2 cut(s)	674, 746
Hpy166II	GTNNAC	2 cut(s)	394, 624
Hpy188I	TCNGA	4 cut(s)	12, 253, 273, 535
Hpy188III	TCNNGA	2 cut(s)	349, 548
Hpy8I	GTNNAC	2 cut(s)	394, 624
HpyAV	CCTTC	1 cut(s)	784
HpyCH4III	ACNGT	3 cut(s)	332, 367, 404
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 50, 59, 172, 469
HpyF3I	CTNAG	3 cut(s)	11, 576, 800
Hsp92I	GRCGYC	1 cut(s)	626
Hsp92II	CATG	3 cut(s)	313, 448, 641
HspAI	GCGC	2 cut(s)	164, 242
Kzo9I	GATC	4 cut(s)	498, 600, 648, 812
LmnI	GCTCC	3 cut(s)	253, 460, 677
Lsp1109I	GCAGC	2 cut(s)	31, 53
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	597
MaeIII	GTNAC	2 cut(s)	326, 734
MalI	GATC	4 cut(s)	500, 602, 650, 814
MboI	GATC	4 cut(s)	498, 600, 648, 812
MboII	GAAGA	4 cut(s)	69, 451, 518, 769
MflI	RGATCY	1 cut(s)	498
MluCI	AATT	5 cut(s)	119, 486, 536, 590, 656
MseI	TTAA	6 cut(s)	339, 485, 540, 582, 668, 702
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	630, 740
MssI	GTTTAAAC	1 cut(s)	703
MvaI	CCWGG	2 cut(s)	630, 740
MvnI	CGCG	2 cut(s)	164, 242
MwoI	GCNNNNNNNGC	5 cut(s)	41, 50, 59, 172, 469
NdeII	GATC	4 cut(s)	498, 600, 648, 812
NlaIII	CATG	3 cut(s)	313, 448, 641
NlaIV	GGNNCC	1 cut(s)	500
NmeAIII	GCCGAG	1 cut(s)	203
NmuCI	GTSAC	2 cut(s)	326, 734
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	5 cut(s)	43, 46, 64, 526, 729
PmeI	GTTTAAAC	1 cut(s)	703
PshBI	ATTAAT	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	628, 738
PspEI	GGTNACC	1 cut(s)	734
PspGI	CCWGG	2 cut(s)	628, 738
PspN4I	GGNNCC	1 cut(s)	500
PspPI	GGNCC	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	498
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	6 cut(s)	339, 485, 540, 582, 668, 702
SatI	GCNGC	5 cut(s)	42, 45, 63, 525, 728
Sau3AI	GATC	4 cut(s)	498, 600, 648, 812
Sau96I	GGNCC	1 cut(s)	545
ScrFI	CCNGG	2 cut(s)	630, 740
SfaNI	GCATC	1 cut(s)	257
SinI	GGWCC	1 cut(s)	545
Sse9I	AATT	5 cut(s)	119, 486, 536, 590, 656
SsiI	CCGC	5 cut(s)	63, 162, 246, 524, 728
SspMI	CTAG	1 cut(s)	597
StyD4I	CCNGG	2 cut(s)	628, 738
TaaI	ACNGT	3 cut(s)	332, 367, 404
TaqI	TCGA	4 cut(s)	124, 603, 647, 811
TasI	AATT	5 cut(s)	119, 486, 536, 590, 656
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	3 cut(s)	65, 527, 730
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	6 cut(s)	339, 485, 540, 582, 668, 702
Tru9I	TTAA	6 cut(s)	339, 485, 540, 582, 668, 702
TscAI	CASTG	3 cut(s)	24, 694, 753
TseFI	GTSAC	2 cut(s)	326, 734
TseI	GCWGC	2 cut(s)	41, 44
Tsp45I	GTSAC	2 cut(s)	326, 734
TspDTI	ATGAA	3 cut(s)	335, 669, 729
TspGWI	ACGGA	2 cut(s)	78, 180
TspRI	CASTG	3 cut(s)	24, 694, 753
VpaK11BI	GGWCC	1 cut(s)	545
VspI	ATTAAT	1 cut(s)	485
XapI	RAATTY	2 cut(s)	536, 656
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.