Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006828

Physical Location & Seq

Genomic Coordinates Reverse (-)

10825252 .. 10826726

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGTGCTCGCACGACCACAAGGTCAGCAAAGAGGAGGTGATCGCCAAGCTCAAGGACGACGGAGACTTCGACAGGCTCCGCCGCAGCATCATCCTCAAGCTAAAAAACAATGAACAATTGCGAGAAAATATTGCTTCTATTGTGAAGCAATCCGCCGTGCTTAATCGTGAAGGTGCTGAGAATATGAAACCCAGACAGCTTTCCGATGACATTTATCAGGAGGTTGGGGACCAAGTAATGAGCCACATATCTGATGGGTTGTGGGGTATAATCAGATCAAGTGATGGCATGAAAAGTGAAATAGCAGAAACTGTTCAATCCGTCTACAATAAATTGACTAACCCAAATGGGGAAGCTGAGGGTGAACCCTCCACTCGTGATGTTCCAGTTCAAAACGAAGTTGACAGTAATGGCTTAGTTGTTGCTGCCGCCAGTGAAATTGATGATAAGTTGTCTGACAATGAGCCAAAAATACCACAGGGATTTTGTTTTTCTGGCAATTATCAGAAAAATGATAATGATGCGTTACAACTACCTCTACCTCATGTTAAAGGAGCCATTGAAGAATGGAAGGGAAGTTCACACCAGTTACAAGATAGGATGGATTCTGTTGATAACAGATTGGAACCTGGCATTTCTACAGATGTGGAGCACAAGCAGGCATGTGATGGTAGTGATGAGGACCCTGATGTGCCTCCTGGTTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMPASS-Shg1

Protein Analysis

238

Amino Acids

26.22

Weight (kDa)

4.6

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12530
fragaria_vesca	FvH4_5g01130
malus_domestica	MD04G1071100.v1.1 MD06G1069000.v1.1
prunus_persica	Prupe.5G086200_v2.0.a1
pyrus_communis	pycom06g06760
rosa_chinensis	RchiOBHm_Chr7g0199991 RchiOBHm_Chr7g0200011 RchiOBHm_Chr7g0200111 RchiOBHm_Chr7g0224151
rosa_laevigata	RLG00000003751
rosa_multiflora	Rmu_sc0003357.1_g000003 Rmu_sc0006685.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256290
rosa_rugosa	Rorug07G0057700 Rorug07G0057800.1 Rorug07G0057900
rosa_samantha	Rh7AG183200 Rh7AG486200 Rh7BG186200 Rh7CG192800 Rh7CG192900 Rh7DG186100 Rh7DG186200 Rh7DG187300
rosa_wichuraiana	Rw7G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	4 cut(s)	82, 85, 156, 432
AfiI	CCNNNNNNNGG	2 cut(s)	352, 707
AgsI	TTSAA	3 cut(s)	320, 395, 566
AjnI	CCWGG	2 cut(s)	631, 700
AloI	GAACNNNNNNTCC	2 cut(s)	565, 597
AluBI	AGCT	4 cut(s)	52, 103, 202, 359
AluI	AGCT	4 cut(s)	52, 103, 202, 359
Alw21I	GWGCWC	2 cut(s)	11, 657
Alw26I	GTCTC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	87, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	232, 685
AsuHPI	GGTGA	2 cut(s)	52, 377
AvaII	GGWCC	2 cut(s)	232, 685
BauI	CACGAG	1 cut(s)	378
Bbv12I	GWGCWC	2 cut(s)	11, 657
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	99, 415
BccI	CCATC	4 cut(s)	251, 281, 598, 665
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	2 cut(s)	633, 702
BcoDI	GTCTC	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	642
BisI	GCNGC	4 cut(s)	85, 88, 429, 432
BlsI	GCNGC	4 cut(s)	86, 89, 430, 433
Bme1390I	CCNGG	2 cut(s)	633, 702
Bme18I	GGWCC	2 cut(s)	232, 685
BmgT120I	GGNCC	2 cut(s)	232, 685
BmiI	GGNNCC	5 cut(s)	80, 233, 559, 630, 687
BmrFI	CCNGG	2 cut(s)	633, 702
BmsI	GCATC	2 cut(s)	99, 514
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	38, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 707
Bse1I	ACTGG	3 cut(s)	389, 435, 589
BseBI	CCWGG	2 cut(s)	633, 702
BseGI	GGATG	2 cut(s)	93, 609
BseLI	CCNNNNNNNGG	2 cut(s)	352, 707
BseMII	CTCAG	2 cut(s)	171, 351
BseNI	ACTGG	3 cut(s)	389, 435, 589
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	99, 415
BsiHKAI	GWGCWC	2 cut(s)	11, 657
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	352, 707
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	11, 657
Bsp143I	GATC	2 cut(s)	42, 278
BspACI	CCGC	4 cut(s)	82, 85, 156, 432
BspCNI	CTCAG	2 cut(s)	172, 352
BspLI	GGNNCC	5 cut(s)	80, 233, 559, 630, 687
BsrI	ACTGG	3 cut(s)	389, 435, 589
BssMI	GATC	2 cut(s)	42, 278
BssSI	CACGAG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	633, 702
Bst4CI	ACNGT	2 cut(s)	316, 410
BstC8I	GCNNGC	2 cut(s)	11, 663
BstDEI	CTNAG	3 cut(s)	180, 360, 418
BstF5I	GGATG	2 cut(s)	93, 609
BstKTI	GATC	2 cut(s)	45, 281
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	2 cut(s)	42, 278
BstNI	CCWGG	2 cut(s)	633, 702
BstNSI	RCATGY	1 cut(s)	669
BstSCI	CCNGG	2 cut(s)	631, 700
BstSFI	CTRYAG	1 cut(s)	642
BstV1I	GCAGC	2 cut(s)	99, 415
BtsCI	GGATG	2 cut(s)	93, 609
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	11, 663
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	232, 685
CviAII	CATG	3 cut(s)	292, 548, 666
CviJI	RGCY	9 cut(s)	52, 79, 103, 202, 246, 359, 417, 469, 560
CviKI_1	RGCY	9 cut(s)	52, 79, 103, 202, 246, 359, 417, 469, 560
DdeI	CTNAG	3 cut(s)	180, 360, 418
DpnI	GATC	2 cut(s)	44, 280
DpnII	GATC	2 cut(s)	42, 278
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EciI	GGCGGA	2 cut(s)	71, 145
Eco47I	GGWCC	2 cut(s)	232, 685
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	631, 700
FaeI	CATG	3 cut(s)	295, 551, 669
FaiI	YATR	6 cut(s)	188, 251, 272, 293, 549, 667
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	3 cut(s)	291, 547, 665
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	4 cut(s)	85, 88, 429, 432
FokI	GGATG	2 cut(s)	80, 616
Fsp4HI	GCNGC	4 cut(s)	85, 88, 429, 432
GluI	GCNGC	4 cut(s)	85, 88, 429, 432
Hin1II	CATG	3 cut(s)	295, 551, 669
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	608
HphI	GGTGA	2 cut(s)	52, 377
Hpy166II	GTNNAC	4 cut(s)	328, 368, 406, 584
Hpy188I	TCNGA	5 cut(s)	208, 256, 278, 460, 510
Hpy188III	TCNNGA	3 cut(s)	170, 221, 380
Hpy8I	GTNNAC	4 cut(s)	328, 368, 406, 584
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	167, 568
HpyCH4III	ACNGT	2 cut(s)	316, 410
HpyF3I	CTNAG	3 cut(s)	180, 360, 418
Hsp92II	CATG	3 cut(s)	295, 551, 669
Kzo9I	GATC	2 cut(s)	42, 278
LmnI	GCTCC	3 cut(s)	84, 557, 652
Lsp1109I	GCAGC	2 cut(s)	99, 415
LweI	GCATC	2 cut(s)	99, 514
MaeIII	GTNAC	2 cut(s)	528, 591
MalI	GATC	2 cut(s)	44, 280
MboI	GATC	2 cut(s)	42, 278
MboII	GAAGA	1 cut(s)	578
MfeI	CAATTG	1 cut(s)	119
MhlI	GDGCHC	2 cut(s)	11, 657
MluCI	AATT	4 cut(s)	119, 335, 441, 502
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	2 cut(s)	165, 552
MspR9I	CCNGG	2 cut(s)	633, 702
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	2 cut(s)	633, 702
NdeII	GATC	2 cut(s)	42, 278
NlaIII	CATG	3 cut(s)	295, 551, 669
NlaIV	GGNNCC	5 cut(s)	80, 233, 559, 630, 687
NspI	RCATGY	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	608
PkrI	GCNGC	4 cut(s)	86, 89, 430, 433
PpuMI	RGGWCCY	1 cut(s)	685
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	2 cut(s)	631, 700
PspGI	CCWGG	2 cut(s)	631, 700
PspN4I	GGNNCC	5 cut(s)	80, 233, 559, 630, 687
PspPI	GGNCC	2 cut(s)	232, 685
PspPPI	RGGWCCY	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	165, 552
SatI	GCNGC	4 cut(s)	85, 88, 429, 432
Sau3AI	GATC	2 cut(s)	42, 278
Sau96I	GGNCC	2 cut(s)	232, 685
ScrFI	CCNGG	2 cut(s)	633, 702
SduI	GDGCHC	2 cut(s)	11, 657
SfaNI	GCATC	2 cut(s)	99, 514
SfcI	CTRYAG	1 cut(s)	642
SinI	GGWCC	2 cut(s)	232, 685
SmlI	CTYRAG	2 cut(s)	53, 98
SmoI	CTYRAG	2 cut(s)	53, 98
Sse9I	AATT	4 cut(s)	119, 335, 441, 502
SsiI	CCGC	4 cut(s)	82, 85, 156, 432
SspI	AATATT	1 cut(s)	133
StyD4I	CCNGG	2 cut(s)	631, 700
TaaI	ACNGT	2 cut(s)	316, 410
TaqI	TCGA	1 cut(s)	72
TasI	AATT	4 cut(s)	119, 335, 441, 502
TauI	GCSGC	2 cut(s)	87, 434
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	2 cut(s)	165, 552
Tru9I	TTAA	2 cut(s)	165, 552
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	2 cut(s)	87, 428
TspDTI	ATGAA	3 cut(s)	129, 203, 308
TspGWI	ACGGA	2 cut(s)	78, 313
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	2 cut(s)	232, 685
XceI	RCATGY	1 cut(s)	669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.