pycom06g10770

Basic leucine zipper and W2 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0006554
Physical Location & Seq
Forward (+)
16029299 .. 16031319
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGTATTTCTTGTATTTCTGTTTCTTTTTCGTTTCGATCCAGTTTCTTGTGGTCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGCGGATGCAGTGGTCCAGATATATCTGGATAATGCTGGTGATCTGGAACTTATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTTTGAGGTTGTTTTCACTGGAGGCCGTACACAACCTGGAACAACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTATTAGAGTCTGAGCCTACGCGTGAACTCATCTTGCCATCGGTTATATACCTTCAAAAAATTTTGAGGCGGAGGCCATTTCTGATTAAGAATCTTGAAAATGTTATGCGACGATTCCTTCAATCGTTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTGGCTATTTTCACAGCACTTGCATTCTCTCAGAATCTGTCAGGACTTCCACCGGAAACGGTGTTCCAGCCAATGCTCAAGGATAATCTTGTTGGCAAAGGGCTAGTTCTATCGTTCATTACTGATTTTTTCAAGGAGTATTTGATTGATAATAGTCTTGATGATTTGATTTCCATTCTGAAGCGGGGTAAAGTGGAGGACAATCTTTTGGAATTCTTCCCATCCGCAAAGAGAACTGAAGAGAATTTCTCTGAGCATTTCACGAAGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
W2

Protein Analysis

252

Amino Acids

28.83

Weight (kDa)

5.88

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_5MP1_2 PF25504 30 - 250 4.6e-77 5MP1/2 HEAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 85, 346
AciI CCGC 7 cut(s) 85, 97, 119, 140, 394, 667, 708
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 3 cut(s) 384, 695, 727
AcuI CTGAAG 3 cut(s) 195, 683, 741
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 3 cut(s) 74, 102, 302
AflIII ACRYGT 1 cut(s) 344
AgsI TTSAA 5 cut(s) 206, 380, 422, 446, 616
AjnI CCWGG 1 cut(s) 280
AloI GAACNNNNNNTCC 2 cut(s) 530, 562
AluBI AGCT 3 cut(s) 134, 457, 484
AluI AGCT 3 cut(s) 134, 457, 484
Alw26I GTCTC 2 cut(s) 58, 58
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 520
AoxI GGCC 2 cut(s) 268, 398
ApeKI GCWGC 2 cut(s) 113, 131
ApoI RAATTY 3 cut(s) 384, 695, 727
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AspLEI GCGC 2 cut(s) 118, 312
AspS9I GGNCC 2 cut(s) 124, 151
AsuHPI GGTGA 2 cut(s) 188, 248
AvaII GGWCC 2 cut(s) 124, 151
BbvI GCAGC 2 cut(s) 125, 143
BccI CCATC 2 cut(s) 370, 712
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 58, 58
BfaI CTAG 2 cut(s) 587, 754
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 2 cut(s) 119, 313
BisI GCNGC 3 cut(s) 114, 119, 132
BlsI GCNGC 3 cut(s) 115, 120, 133
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 2 cut(s) 124, 151
BmgT120I GGNCC 2 cut(s) 124, 151
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 133
BplI GAGNNNNNCTC 4 cut(s) 55, 87, 716, 748
BpmI CTGGAG 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 211, 545
BsaI GGTCTC 2 cut(s) 58, 58
BsaWI WCCGGW 1 cut(s) 535
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 102, 302
Bse1I ACTGG 2 cut(s) 40, 268
BseBI CCWGG 1 cut(s) 282
BseGI GGATG 2 cut(s) 148, 704
BseLI CCNNNNNNNGG 3 cut(s) 74, 102, 302
BseMII CTCAG 3 cut(s) 327, 527, 726
BseNI ACTGG 2 cut(s) 40, 268
BseXI GCAGC 2 cut(s) 125, 143
Bsh1236I CGCG 2 cut(s) 85, 346
BshFI GGCC 2 cut(s) 270, 400
BsiSI CCGG 1 cut(s) 536
BslI CCNNNNNNNGG 3 cut(s) 74, 102, 302
BsmAI GTCTC 2 cut(s) 58, 58
BsmI GAATGC 1 cut(s) 506
BsnI GGCC 2 cut(s) 270, 400
Bso31I GGTCTC 2 cut(s) 58, 58
Bsp143I GATC 2 cut(s) 36, 178
BspACI CCGC 7 cut(s) 85, 97, 119, 140, 394, 667, 708
BspANI GGCC 2 cut(s) 270, 400
BspCNI CTCAG 3 cut(s) 328, 526, 727
BspFNI CGCG 2 cut(s) 85, 346
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 31
BspTNI GGTCTC 2 cut(s) 58, 58
BsrI ACTGG 2 cut(s) 40, 268
BssMI GATC 2 cut(s) 36, 178
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 236, 544
Bst6I CTCTTC 1 cut(s) 717
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 83, 486
BstDEI CTNAG 3 cut(s) 336, 513, 735
BstF5I GGATG 2 cut(s) 148, 704
BstFNI CGCG 2 cut(s) 85, 346
BstH2I RGCGCY 2 cut(s) 119, 313
BstHHI GCGC 2 cut(s) 118, 312
BstKTI GATC 2 cut(s) 39, 181
BstMAI GTCTC 2 cut(s) 58, 58
BstMBI GATC 2 cut(s) 36, 178
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 2 cut(s) 85, 346
BstV1I GCAGC 2 cut(s) 125, 143
BsuRI GGCC 2 cut(s) 270, 400
BtsCI GGATG 2 cut(s) 148, 704
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 153, 261
Cac8I GCNNGC 2 cut(s) 83, 486
CaiI CAGNNNCTG 1 cut(s) 520
CfoI GCGC 2 cut(s) 118, 312
Cfr13I GGNCC 2 cut(s) 124, 151
Csp6I GTAC 1 cut(s) 273
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 3 cut(s) 336, 513, 735
DpnI GATC 2 cut(s) 38, 180
DpnII GATC 2 cut(s) 36, 178
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
EciI GGCGGA 1 cut(s) 409
Eco31I GGTCTC 2 cut(s) 58, 58
Eco47I GGWCC 2 cut(s) 124, 151
Eco57I CTGAAG 3 cut(s) 195, 683, 741
EcoRI GAATTC 1 cut(s) 695
EcoRII CCWGG 1 cut(s) 280
FaiI YATR 4 cut(s) 160, 371, 373, 431
FauI CCCGC 2 cut(s) 104, 660
Fnu4HI GCNGC 3 cut(s) 114, 119, 132
FokI GGATG 2 cut(s) 155, 691
Fsp4HI GCNGC 3 cut(s) 114, 119, 132
FspBI CTAG 2 cut(s) 587, 754
GlaI GCGC 2 cut(s) 117, 311
GluI GCNGC 3 cut(s) 114, 119, 132
GsuI CTGGAG 1 cut(s) 285
HaeII RGCGCY 2 cut(s) 119, 313
HaeIII GGCC 2 cut(s) 270, 400
HapII CCGG 1 cut(s) 536
HhaI GCGC 2 cut(s) 118, 312
Hin6I GCGC 2 cut(s) 116, 310
HinP1I GCGC 2 cut(s) 116, 310
HinfI GANTC 5 cut(s) 206, 332, 415, 438, 517
HpaII CCGG 1 cut(s) 536
HphI GGTGA 2 cut(s) 188, 248
Hpy166II GTNNAC 2 cut(s) 275, 350
Hpy188I TCNGA 6 cut(s) 214, 337, 408, 516, 663, 736
Hpy188III TCNNGA 9 cut(s) 55, 154, 164, 182, 228, 419, 525, 641, 745
Hpy8I GTNNAC 2 cut(s) 275, 350
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 4 cut(s) 52, 386, 452, 742
HpyCH4III ACNGT 2 cut(s) 236, 544
HpyCH4V TGCA 4 cut(s) 113, 131, 146, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 3 cut(s) 336, 513, 735
HspAI GCGC 2 cut(s) 116, 310
Kzo9I GATC 2 cut(s) 36, 178
LmnI GCTCC 2 cut(s) 307, 454
Lsp1109I GCAGC 2 cut(s) 125, 143
LweI GCATC 1 cut(s) 133
MaeI CTAG 2 cut(s) 587, 754
MaeIII GTNAC 1 cut(s) 236
MalI GATC 2 cut(s) 38, 180
MboI GATC 2 cut(s) 36, 178
MboII GAAGA 4 cut(s) 201, 490, 691, 734
MluCI AATT 3 cut(s) 384, 695, 727
MluI ACGCGT 1 cut(s) 344
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 7 cut(s) 244, 260, 295, 384, 390, 457, 673
MseI TTAA 3 cut(s) 90, 219, 411
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 506
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 2 cut(s) 85, 346
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 2 cut(s) 36, 178
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 236
PctI GAATGC 1 cut(s) 506
PfeI GAWTC 4 cut(s) 206, 415, 438, 517
PkrI GCNGC 3 cut(s) 115, 120, 133
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 2 cut(s) 124, 151
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 520
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 3 cut(s) 90, 219, 411
SatI GCNGC 3 cut(s) 114, 119, 132
Sau3AI GATC 2 cut(s) 36, 178
Sau96I GGNCC 2 cut(s) 124, 151
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 282
SetI ASST 9 cut(s) 136, 219, 245, 255, 283, 298, 378, 459, 486
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 2 cut(s) 124, 151
SmlI CTYRAG 2 cut(s) 226, 560
SmoI CTYRAG 2 cut(s) 226, 560
Sse9I AATT 3 cut(s) 384, 695, 727
SsiI CCGC 7 cut(s) 85, 97, 119, 140, 394, 667, 708
SspI AATATT 1 cut(s) 109
SspMI CTAG 2 cut(s) 587, 754
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 236, 544
TaqI TCGA 2 cut(s) 35, 56
TasI AATT 3 cut(s) 384, 695, 727
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 4 cut(s) 206, 415, 438, 517
Tru1I TTAA 3 cut(s) 90, 219, 411
Tru9I TTAA 3 cut(s) 90, 219, 411
TscAI CASTG 2 cut(s) 153, 268
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 113, 131
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 486, 589
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 2 cut(s) 153, 268
VpaK11BI GGWCC 2 cut(s) 124, 151
XapI RAATTY 3 cut(s) 384, 695, 727
XspI CTAG 2 cut(s) 587, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.