pycom06g20330

Domain of unknown function (DUF4539)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
23426042 .. 23428263
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g20330.2

Sequence Viewer

Length: 1029 bp
ATGGACGACGACGACAGCAATGAACCCTGGGAGCAACTAGACGTCGACGATTCGGACCTCATCTCTCTCAGTCTCCGCCCTTGCAAGCGCTCAGCCTCCCATTCCCTCAAATCAATTAATCCTCCGCCTCCGCCCAACCCCTCCTCGTCCTCTTCTGCCTCTCCTCCTCTCATTCCAGGCCCCGCCGGAGCCGTACAGGCCGCGATGCAGCGCAGGACCCAAATTCATCGCCACGGAGACGACCAGAACGTCGAGCCCATTCCGACCCAAGAGTTCGTTAGGAGGGTCGTCGAGAATGGTGATGATAAAGACACCGATTTCGCCGCCGATCCATGGCTTTCCGCTCTCGATTATGTTGCAAAGCAAGGCGCCGACTATCCGACGCCGCTGGGTTCCATCAGGAAGGGGGTTGACACTCACAGAGTAGCTCAGGTCATCTCCAAGGATGGTAGACCTGTCGTGACAAACGATCTTCCTATTTCATCAGTCAACAATCCCGCTCCCAGCAGTGACAGTGCTGCGGTAAGTCATACGAGGTTTTGGGCGCCACAAGAAAAGTTCCCTCCGCGACAGGAAAGCACTGAAAAAATCATGAATCATCTAAGACAAAGTTCTGCAGTAAGAGGGAGCGATCTTAACATTGAGAAACATATGGAAACAGATCATGCTGCGGCGCCAGGAATGAGCTGCTCAGGCCACAAGCAGCGTGGAAGTCAAACTGCGGACGTGGAGGTTCTTTCTTCATCGGTGAAAAAGACAATGCCTGATGGAACCACAAAAATGGCAAATAGAAAAGACCGTTTTAACAACGAGGTAACTGCCGCAGCTAAGAAGGCCAACAATCCTGACGGAGTGGCTGAGGGTGGCAATCCATCGAGCAGGAGCCGACCTATCAACCCAGTTGAGATTCCTGATGATCAAGAAGTTGGGAAAACAACCGGAGCTAAAAGGCCGAGGCAGCCACTGATTACGAGAGCTTCACTCCCGGAGTATACAGAAGAAGAGCTGGATCTGTTCGAATTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

343

Amino Acids

37.22

Weight (kDa)

5.36

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AatII GACGTC 1 cut(s) 45
AccB1I GGYRCC 3 cut(s) 368, 544, 673
AccBSI CCGCTC 2 cut(s) 344, 500
AccI GTMKAC 3 cut(s) 45, 451, 992
AccII CGCG 2 cut(s) 203, 568
AclWI GGATC 2 cut(s) 323, 1017
AcsI RAATTY 2 cut(s) 222, 1019
AcyI GRCGYC 5 cut(s) 42, 369, 383, 545, 674
AfaI GTAC 1 cut(s) 195
AfeI AGCGCT 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 333
AjiI CACGTC 1 cut(s) 727
AjnI CCWGG 3 cut(s) 26, 175, 676
AluBI AGCT 6 cut(s) 428, 687, 827, 944, 977, 1006
AluI AGCT 6 cut(s) 428, 687, 827, 944, 977, 1006
Alw26I GTCTC 2 cut(s) 77, 231
AlwI GGATC 2 cut(s) 323, 1017
AlwNI CAGNNNCTG 1 cut(s) 964
Aor51HI AGCGCT 1 cut(s) 89
AoxI GGCC 5 cut(s) 178, 198, 694, 834, 950
ApeKI GCWGC 7 cut(s) 208, 518, 668, 687, 703, 824, 958
ApoI RAATTY 2 cut(s) 222, 1019
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AseI ATTAAT 1 cut(s) 117
AspLEI GCGC 5 cut(s) 90, 213, 371, 547, 676
AspS9I GGNCC 3 cut(s) 55, 179, 216
AsuC2I CCSGG 1 cut(s) 986
AsuHPI GGTGA 2 cut(s) 311, 760
AsuII TTCGAA 1 cut(s) 1017
AvaII GGWCC 2 cut(s) 55, 216
BanI GGYRCC 3 cut(s) 368, 544, 673
BanII GRGCYC 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 858
BbvI GCAGC 7 cut(s) 220, 505, 655, 674, 715, 836, 970
BccI CCATC 4 cut(s) 404, 440, 761, 880
BceAI ACGGC 1 cut(s) 176
BcgI CGANNNNNNTGC 4 cut(s) 338, 372, 800, 834
BciT130I CCWGG 3 cut(s) 28, 177, 678
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 1 cut(s) 986
BcoDI GTCTC 2 cut(s) 77, 231
BfaI CTAG 2 cut(s) 38, 1027
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 4 cut(s) 91, 372, 548, 677
BglI GCCNNNNNGGC 1 cut(s) 197
BlpI GCTNAGC 1 cut(s) 91
Bme1390I CCNGG 4 cut(s) 28, 177, 678, 986
Bme18I GGWCC 2 cut(s) 55, 216
BmgBI CACGTC 1 cut(s) 727
BmgT120I GGNCC 3 cut(s) 55, 179, 216
BmiI GGNNCC 9 cut(s) 181, 190, 218, 370, 394, 546, 675, 772, 884
BmrFI CCNGG 4 cut(s) 28, 177, 678, 986
BmrI ACTGGG 1 cut(s) 893
BmsI GCATC 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 893
BplI GAGNNNNNCTC 2 cut(s) 966, 998
Bpu10I CCTNAGC 3 cut(s) 429, 691, 858
Bpu1102I GCTNAGC 1 cut(s) 91
Bpu14I TTCGAA 1 cut(s) 1017
BpuMI CCSGG 1 cut(s) 986
BsaHI GRCGYC 5 cut(s) 42, 369, 383, 545, 674
BsaJI CCNNGG 6 cut(s) 26, 27, 232, 332, 441, 953
BsaWI WCCGGW 1 cut(s) 938
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse1I ACTGG 1 cut(s) 899
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 3 cut(s) 28, 177, 678
BseDI CCNNGG 6 cut(s) 26, 27, 232, 332, 441, 953
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 5 cut(s) 82, 105, 443, 705, 849
BseNI ACTGG 1 cut(s) 899
BseRI GAGGAG 3 cut(s) 133, 153, 156
BseXI GCAGC 7 cut(s) 220, 505, 655, 674, 715, 836, 970
BseYI CCCAGC 2 cut(s) 388, 503
Bsh1236I CGCG 2 cut(s) 203, 568
BshFI GGCC 5 cut(s) 180, 200, 696, 836, 952
BshNI GGYRCC 3 cut(s) 368, 544, 673
BsiSI CCGG 3 cut(s) 186, 939, 986
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 2 cut(s) 77, 231
BsmBI CGTCTC 1 cut(s) 231
BsnI GGCC 5 cut(s) 180, 200, 696, 836, 952
Bsp119I TTCGAA 1 cut(s) 1017
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 6 cut(s) 328, 469, 631, 661, 916, 1009
Bsp1720I GCTNAGC 1 cut(s) 91
Bsp19I CCATGG 1 cut(s) 332
BspANI GGCC 5 cut(s) 180, 200, 696, 836, 952
BspCNI CTCAG 5 cut(s) 81, 104, 442, 704, 850
BspFNI CGCG 2 cut(s) 203, 568
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 9 cut(s) 181, 190, 218, 370, 394, 546, 675, 772, 884
BspMAI CTGCAG 1 cut(s) 619
BspPI GGATC 2 cut(s) 323, 1017
BspQI GCTCTTC 1 cut(s) 996
BspT104I TTCGAA 1 cut(s) 1017
BspT107I GGYRCC 3 cut(s) 368, 544, 673
BsrBI CCGCTC 2 cut(s) 344, 500
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 1 cut(s) 899
BssECI CCNNGG 6 cut(s) 26, 27, 232, 332, 441, 953
BssMI GATC 6 cut(s) 328, 469, 631, 661, 916, 1009
BssNAI GTATAC 1 cut(s) 993
BssNI GRCGYC 5 cut(s) 42, 369, 383, 545, 674
BssT1I CCWWGG 2 cut(s) 332, 441
Bst1107I GTATAC 1 cut(s) 993
Bst2UI CCWGG 3 cut(s) 28, 177, 678
Bst4CI ACNGT 2 cut(s) 515, 800
Bst6I CTCTTC 2 cut(s) 157, 996
BstACI GRCGYC 5 cut(s) 42, 369, 383, 545, 674
BstBI TTCGAA 1 cut(s) 1017
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 7 cut(s) 68, 91, 429, 602, 691, 828, 858
BstDSI CCRYGG 2 cut(s) 232, 332
BstF5I GGATG 1 cut(s) 451
BstFNI CGCG 2 cut(s) 203, 568
BstH2I RGCGCY 4 cut(s) 91, 372, 548, 677
BstHHI GCGC 5 cut(s) 90, 213, 371, 547, 676
BstKTI GATC 6 cut(s) 331, 472, 634, 664, 919, 1012
BstMAI GTCTC 2 cut(s) 77, 231
BstMBI GATC 6 cut(s) 328, 469, 631, 661, 916, 1009
BstMWI GCNNNNNNNGC 4 cut(s) 197, 693, 833, 958
BstNI CCWGG 3 cut(s) 28, 177, 678
BstSCI CCNGG 4 cut(s) 26, 175, 676, 984
BstSFI CTRYAG 1 cut(s) 615
BstUI CGCG 2 cut(s) 203, 568
BstV1I GCAGC 7 cut(s) 220, 505, 655, 674, 715, 836, 970
BstX2I RGATCY 1 cut(s) 1009
BstXI CCANNNNNNTGG 1 cut(s) 781
BstYI RGATCY 1 cut(s) 1009
BstZ17I GTATAC 1 cut(s) 993
BsuRI GGCC 5 cut(s) 180, 200, 696, 836, 952
BtgI CCRYGG 2 cut(s) 232, 332
BtgZI GCGATG 2 cut(s) 212, 218
BtrI CACGTC 1 cut(s) 727
BtsCI GGATG 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 4 cut(s) 514, 520, 579, 962
Cac8I GCNNGC 1 cut(s) 86
CaiI CAGNNNCTG 1 cut(s) 964
CciI TCATGA 1 cut(s) 591
CfoI GCGC 5 cut(s) 90, 213, 371, 547, 676
Cfr13I GGNCC 3 cut(s) 55, 179, 216
CseI GACGC 1 cut(s) 391
Csp6I GTAC 1 cut(s) 194
CspCI CAANNNNNGTGG 2 cut(s) 688, 723
CviAII CATG 3 cut(s) 333, 592, 665
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 7 cut(s) 68, 91, 429, 602, 691, 828, 858
DinI GGCGCC 3 cut(s) 370, 546, 675
DpnI GATC 6 cut(s) 330, 471, 633, 663, 918, 1011
DpnII GATC 6 cut(s) 328, 469, 631, 661, 916, 1009
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
Eam1104I CTCTTC 2 cut(s) 157, 996
EarI CTCTTC 2 cut(s) 157, 996
EciI GGCGGA 3 cut(s) 65, 114, 120
Eco130I CCWWGG 2 cut(s) 332, 441
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 55, 216
Eco47III AGCGCT 1 cut(s) 89
EcoO109I RGGNCCY 2 cut(s) 179, 216
EcoRII CCWGG 3 cut(s) 26, 175, 676
EcoT14I CCWWGG 2 cut(s) 332, 441
EcoT38I GRGCYC 1 cut(s) 258
EgeI GGCGCC 3 cut(s) 370, 546, 675
EheI GGCGCC 3 cut(s) 370, 546, 675
ErhI CCWWGG 2 cut(s) 332, 441
Esp3I CGTCTC 1 cut(s) 231
FaeI CATG 3 cut(s) 336, 595, 668
FaiI YATR 8 cut(s) 334, 354, 531, 593, 651, 653, 666, 993
FatI CATG 3 cut(s) 332, 591, 664
FauI CCCGC 2 cut(s) 190, 505
FauNDI CATATG 1 cut(s) 651
FbaI TGATCA 1 cut(s) 916
FblI GTMKAC 3 cut(s) 45, 451, 992
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 258
FspBI CTAG 2 cut(s) 38, 1027
GlaI GCGC 5 cut(s) 89, 212, 370, 546, 675
GsaI CCCAGC 2 cut(s) 392, 507
HaeII RGCGCY 4 cut(s) 91, 372, 548, 677
HaeIII GGCC 5 cut(s) 180, 200, 696, 836, 952
HapII CCGG 3 cut(s) 186, 939, 986
HgaI GACGC 1 cut(s) 391
HhaI GCGC 5 cut(s) 90, 213, 371, 547, 676
Hin1I GRCGYC 5 cut(s) 42, 369, 383, 545, 674
Hin1II CATG 3 cut(s) 336, 595, 668
Hin6I GCGC 5 cut(s) 88, 211, 369, 545, 674
HinP1I GCGC 5 cut(s) 88, 211, 369, 545, 674
HincII GTYRAC 3 cut(s) 46, 412, 490
HindII GTYRAC 3 cut(s) 46, 412, 490
HinfI GANTC 3 cut(s) 50, 595, 907
HpaII CCGG 3 cut(s) 186, 939, 986
HphI GGTGA 2 cut(s) 311, 760
Hpy166II GTNNAC 5 cut(s) 46, 412, 452, 490, 993
Hpy188I TCNGA 3 cut(s) 55, 264, 381
Hpy188III TCNNGA 8 cut(s) 292, 347, 400, 460, 592, 845, 911, 920
Hpy8I GTNNAC 5 cut(s) 46, 412, 452, 490, 993
Hpy99I CGWCG 7 cut(s) 11, 14, 47, 50, 254, 293, 385
HpyAV CCTTC 2 cut(s) 397, 826
HpyCH4III ACNGT 2 cut(s) 515, 800
HpyCH4IV ACGT 3 cut(s) 42, 249, 726
HpyCH4V TGCA 4 cut(s) 84, 208, 359, 617
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 693, 833, 958
HpyF3I CTNAG 7 cut(s) 68, 91, 429, 602, 691, 828, 858
HpySE526I ACGT 3 cut(s) 42, 249, 726
Hsp92I GRCGYC 5 cut(s) 42, 369, 383, 545, 674
Hsp92II CATG 3 cut(s) 336, 595, 668
HspAI GCGC 5 cut(s) 88, 211, 369, 545, 674
KasI GGCGCC 3 cut(s) 368, 544, 673
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 6 cut(s) 328, 469, 631, 661, 916, 1009
LguI GCTCTTC 1 cut(s) 996
LmnI GCTCC 6 cut(s) 31, 188, 505, 627, 882, 941
Lsp1109I GCAGC 7 cut(s) 220, 505, 655, 674, 715, 836, 970
LweI GCATC 1 cut(s) 195
MaeI CTAG 2 cut(s) 38, 1027
MaeII ACGT 3 cut(s) 42, 249, 726
MaeIII GTNAC 3 cut(s) 460, 509, 814
MalI GATC 6 cut(s) 330, 471, 633, 663, 918, 1011
MbiI CCGCTC 2 cut(s) 344, 500
MboI GATC 6 cut(s) 328, 469, 631, 661, 916, 1009
MboII GAAGA 5 cut(s) 144, 464, 732, 1010, 1013
MflI RGATCY 1 cut(s) 1009
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 3 cut(s) 114, 222, 1019
Mly113I GGCGCC 3 cut(s) 369, 545, 674
MmeI TCCRAC 2 cut(s) 287, 404
MseI TTAA 3 cut(s) 117, 636, 804
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 3 cut(s) 186, 939, 986
MspR9I CCNGG 4 cut(s) 28, 177, 678, 986
MvaI CCWGG 3 cut(s) 28, 177, 678
MvnI CGCG 2 cut(s) 203, 568
MwoI GCNNNNNNNGC 4 cut(s) 197, 693, 833, 958
NarI GGCGCC 3 cut(s) 369, 545, 674
NciI CCSGG 1 cut(s) 986
NcoI CCATGG 1 cut(s) 332
NdeI CATATG 1 cut(s) 651
NdeII GATC 6 cut(s) 328, 469, 631, 661, 916, 1009
NlaIII CATG 3 cut(s) 336, 595, 668
NlaIV GGNNCC 9 cut(s) 181, 190, 218, 370, 394, 546, 675, 772, 884
NmeAIII GCCGAG 1 cut(s) 978
NmuCI GTSAC 2 cut(s) 460, 509
NspV TTCGAA 1 cut(s) 1017
PagI TCATGA 1 cut(s) 591
PasI CCCWGGG 1 cut(s) 27
PciSI GCTCTTC 1 cut(s) 996
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 465
PfeI GAWTC 3 cut(s) 50, 595, 907
PfoI TCCNGGA 1 cut(s) 984
PluTI GGCGCC 3 cut(s) 372, 548, 677
PpuMI RGGWCCY 1 cut(s) 216
PshBI ATTAAT 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 3 cut(s) 26, 175, 676
PspFI CCCAGC 2 cut(s) 388, 503
PspGI CCWGG 3 cut(s) 26, 175, 676
PspN4I GGNNCC 9 cut(s) 181, 190, 218, 370, 394, 546, 675, 772, 884
PspPI GGNCC 3 cut(s) 55, 179, 216
PspPPI RGGWCCY 1 cut(s) 216
PstI CTGCAG 1 cut(s) 619
PstNI CAGNNNCTG 1 cut(s) 964
PsuI RGATCY 1 cut(s) 1009
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 779
SalI GTCGAC 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 996
SaqAI TTAA 3 cut(s) 117, 636, 804
Sau3AI GATC 6 cut(s) 328, 469, 631, 661, 916, 1009
Sau96I GGNCC 3 cut(s) 55, 179, 216
ScrFI CCNGG 4 cut(s) 28, 177, 678, 986
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 615
SfoI GGCGCC 3 cut(s) 370, 546, 675
SfuI TTCGAA 1 cut(s) 1017
SgrDI CGTCGACG 1 cut(s) 44
SinI GGWCC 2 cut(s) 55, 216
SmiMI CAYNNNNRTG 1 cut(s) 779
Sse9I AATT 3 cut(s) 114, 222, 1019
SspDI GGCGCC 3 cut(s) 368, 544, 673
SspMI CTAG 2 cut(s) 38, 1027
StyD4I CCNGG 4 cut(s) 26, 175, 676, 984
StyI CCWWGG 2 cut(s) 332, 441
TaaI ACNGT 2 cut(s) 515, 800
TaiI ACGT 3 cut(s) 45, 252, 729
TaqI TCGA 6 cut(s) 45, 252, 291, 348, 875, 1017
TasI AATT 3 cut(s) 114, 222, 1019
TauI GCSGC 5 cut(s) 203, 326, 388, 674, 824
TfiI GAWTC 3 cut(s) 50, 595, 907
Tru1I TTAA 3 cut(s) 117, 636, 804
Tru9I TTAA 3 cut(s) 117, 636, 804
TscAI CASTG 4 cut(s) 514, 520, 586, 969
TseFI GTSAC 2 cut(s) 460, 509
TseI GCWGC 7 cut(s) 208, 518, 668, 687, 703, 824, 958
Tsp45I GTSAC 2 cut(s) 460, 509
TspDTI ATGAA 5 cut(s) 36, 215, 471, 608, 732
TspGWI ACGGA 2 cut(s) 249, 864
TspRI CASTG 4 cut(s) 514, 520, 586, 969
VpaK11BI GGWCC 2 cut(s) 55, 216
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 2 cut(s) 222, 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 704
XmiI GTMKAC 3 cut(s) 45, 451, 992
XspI CTAG 2 cut(s) 38, 1027
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.