Rmu_sc0014842.1_g000001

Domain of unknown function (DUF4539)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014842.1
Physical Location & Seq
Forward (+)
1000 .. 3309
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014842.1_g000001.1.cds

Sequence Viewer

Length: 1182 bp
atggaaccctgggaagaagctctcgacgtagacgacgacgtttcggagctcccctctttctctcttcgcccttgcaaccactcttcctctccttccctaaacccccaacccaaaccctcctcttcatctccggccctcattccgggccccgccggcgccgttcaggccgcgatgcaccgccgctcccagacctcctcctccgacgagccgattccgacgcaggagttcataaggagagtcttcgagaacggcgacgaggaagacgacgatttcccctccgattcttggctccgcgctctcgattcagaaggcggtggcggccctcggacccctttgggctcgatcaagaaggggcttggcactcacagagtagctaaggtagttctattacgtcgtcgttttggtgtcaattggaaattttgtgatctcagatttggggttgttgctatgatcaaatcttgcaccccaaatggtcttggtgatctcatgttgactttgaaggatcctacaggtacaattgatgctaccatccaccgcaaagccctttctgagggagagtttgggaagagcatttctgtgggtgcggttttggttctgcagaaggtcatttccaaggatagtgggcctcttgccacaaaagattttccaattttgtcagttaatactcctgctctcatcagtgcagaaagtagtaaaatgctacggacgccacaagaaaaactcctcctgtcagaggaaagtactcagcgaatcatgaaatgtctgagacaaaattccaaggtgattgggagtgaaaatattgagaagcatatggaaactggccacgcggcaccaggaaggattttctctgctcatgtgcactctggaagccaatttgctgctgtagagatagagccttcattggtggaaaaggctatgcctaatggaatcactaaaatgtctgctagagaggacattattgatacagaacaagtaactggggttgctgaggagctcagaatggctgaagaggacaattcatcaagcatcatccaacccataagtggttcagcaaactcgactgagattcctgataatcatgggagaataacaggagcaaaaaggccaaggcagccactgagcttaacaactgcgctcccagactatacagaagaacaactaaatctgtttgactttgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

393

Amino Acids

42.65

Weight (kDa)

5.28

Isoelectric Point (pI)

61.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 155, 829
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 30
AccII CGCG 3 cut(s) 170, 294, 827
AclWI GGATC 2 cut(s) 497, 510
AcoI YGGCCR 1 cut(s) 820
AcsI RAATTY 2 cut(s) 416, 772
AcuI CTGAAG 1 cut(s) 1026
AcyI GRCGYC 2 cut(s) 156, 707
AfaI GTAC 2 cut(s) 514, 742
AfiI CCNNNNNNNGG 5 cut(s) 142, 285, 550, 733, 1043
AgsI TTSAA 1 cut(s) 499
AjnI CCWGG 2 cut(s) 8, 832
AluBI AGCT 5 cut(s) 20, 49, 374, 994, 1122
AluI AGCT 5 cut(s) 20, 49, 374, 994, 1122
Alw21I GWGCWC 3 cut(s) 51, 861, 996
Alw26I GTCTC 1 cut(s) 760
Alw44I GTGCAC 1 cut(s) 857
AlwI GGATC 2 cut(s) 497, 510
AlwNI CAGNNNCTG 1 cut(s) 1117
AoxI GGCC 7 cut(s) 132, 145, 165, 319, 623, 820, 1103
ApaI GGGCCC 1 cut(s) 149
ApaLI GTGCAC 1 cut(s) 857
ApeKI GCWGC 2 cut(s) 878, 1111
ApoI RAATTY 2 cut(s) 416, 772
AspLEI GCGC 3 cut(s) 158, 296, 1135
AspS9I GGNCC 6 cut(s) 133, 145, 146, 320, 327, 623
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 491, 793
AvaII GGWCC 1 cut(s) 327
BaeGI GKGCMC 2 cut(s) 149, 861
BalI TGGCCA 1 cut(s) 822
BamHI GGATCC 1 cut(s) 502
BanI GGYRCC 2 cut(s) 155, 829
BanII GRGCYC 4 cut(s) 51, 149, 341, 996
BbsI GAAGAC 2 cut(s) 232, 267
Bbv12I GWGCWC 3 cut(s) 51, 861, 996
BbvCI CCTCAGC 1 cut(s) 987
BbvI GCAGC 2 cut(s) 865, 1123
BccI CCATC 1 cut(s) 536
BceAI ACGGC 2 cut(s) 143, 265
BciT130I CCWGG 2 cut(s) 10, 834
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 760
BfaI CTAG 1 cut(s) 945
BfmI CTRYAG 3 cut(s) 507, 596, 882
BfoI RGCGCY 1 cut(s) 159
BglI GCCNNNNNGGC 2 cut(s) 153, 164
BisI GCNGC 6 cut(s) 168, 181, 319, 828, 879, 1112
BlsI GCNGC 6 cut(s) 169, 182, 320, 829, 880, 1113
BmcAI AGTACT 1 cut(s) 742
Bme1390I CCNGG 3 cut(s) 10, 144, 834
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 6 cut(s) 133, 145, 146, 320, 327, 623
BmiI GGNNCC 8 cut(s) 6, 147, 148, 157, 290, 329, 504, 831
BmrFI CCNGG 3 cut(s) 10, 144, 834
BmrI ACTGGG 1 cut(s) 987
BmsI GCATC 3 cut(s) 162, 511, 1035
BmuI ACTGGG 1 cut(s) 987
BpiI GAAGAC 2 cut(s) 232, 267
BplI GAGNNNNNCTC 2 cut(s) 38, 70
Bpu10I CCTNAGC 2 cut(s) 375, 987
BpuMI CCSGG 1 cut(s) 144
BsaHI GRCGYC 2 cut(s) 156, 707
BsaJI CCNNGG 6 cut(s) 8, 9, 323, 612, 777, 1106
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 285, 550, 733, 1043
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 823, 982
BseBI CCWGG 2 cut(s) 10, 834
BseDI CCNNGG 6 cut(s) 8, 9, 323, 612, 777, 1106
BseGI GGATG 2 cut(s) 528, 1029
BseLI CCNNNNNNNGG 5 cut(s) 142, 285, 550, 733, 1043
BseMII CTCAG 8 cut(s) 442, 540, 755, 758, 978, 1009, 1053, 1109
BseNI ACTGG 2 cut(s) 823, 982
BseRI GAGGAG 5 cut(s) 109, 184, 187, 713, 1004
BseSI GKGCMC 2 cut(s) 149, 861
BseXI GCAGC 2 cut(s) 865, 1123
BsgI GTGCAG 1 cut(s) 702
Bsh1236I CGCG 3 cut(s) 170, 294, 827
BshFI GGCC 7 cut(s) 134, 147, 167, 321, 625, 822, 1105
BshNI GGYRCC 2 cut(s) 155, 829
BsiHKAI GWGCWC 3 cut(s) 51, 861, 996
BsiSI CCGG 3 cut(s) 131, 143, 153
BslI CCNNNNNNNGG 5 cut(s) 142, 285, 550, 733, 1043
BsmAI GTCTC 1 cut(s) 760
BsnI GGCC 7 cut(s) 134, 147, 167, 321, 625, 822, 1105
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 5 cut(s) 51, 149, 341, 861, 996
Bsp143I GATC 5 cut(s) 342, 424, 450, 481, 502
BspANI GGCC 7 cut(s) 134, 147, 167, 321, 625, 822, 1105
BspCNI CTCAG 8 cut(s) 441, 541, 756, 757, 979, 1008, 1054, 1110
BspFNI CGCG 3 cut(s) 170, 294, 827
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 8 cut(s) 6, 147, 148, 157, 290, 329, 504, 831
BspMAI CTGCAG 1 cut(s) 600
BspPI GGATC 2 cut(s) 497, 510
BspQI GCTCTTC 1 cut(s) 560
BspT107I GGYRCC 2 cut(s) 155, 829
BsrBI CCGCTC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 2 cut(s) 823, 982
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 6 cut(s) 8, 9, 323, 612, 777, 1106
BssMI GATC 5 cut(s) 342, 424, 450, 481, 502
BssNI GRCGYC 2 cut(s) 156, 707
BssT1I CCWWGG 3 cut(s) 612, 777, 1106
Bst2UI CCWGG 2 cut(s) 10, 834
Bst6I CTCTTC 5 cut(s) 69, 88, 127, 560, 1002
BstACI GRCGYC 2 cut(s) 156, 707
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 9 cut(s) 375, 428, 549, 744, 764, 987, 995, 1062, 1118
BstENI CCTNNNNNAGG 2 cut(s) 548, 731
BstF5I GGATG 2 cut(s) 528, 1029
BstFNI CGCG 3 cut(s) 170, 294, 827
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 3 cut(s) 158, 296, 1135
BstKTI GATC 5 cut(s) 345, 427, 453, 484, 505
BstMAI GTCTC 1 cut(s) 760
BstMBI GATC 5 cut(s) 342, 424, 450, 481, 502
BstMWI GCNNNNNNNGC 5 cut(s) 153, 164, 318, 706, 1111
BstNI CCWGG 2 cut(s) 10, 834
BstSCI CCNGG 3 cut(s) 8, 142, 832
BstSFI CTRYAG 3 cut(s) 507, 596, 882
BstSLI GKGCMC 2 cut(s) 149, 861
BstUI CGCG 3 cut(s) 170, 294, 827
BstV1I GCAGC 2 cut(s) 865, 1123
BstV2I GAAGAC 2 cut(s) 232, 267
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BsuRI GGCC 7 cut(s) 134, 147, 167, 321, 625, 822, 1105
BtgZI GCGATG 1 cut(s) 185
BtsCI GGATG 2 cut(s) 528, 1029
BtsIMutI CAGTG 2 cut(s) 685, 1115
Cac8I GCNNGC 1 cut(s) 154
CaiI CAGNNNCTG 1 cut(s) 1117
CciI TCATGA 1 cut(s) 753
CfoI GCGC 3 cut(s) 158, 296, 1135
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 6 cut(s) 133, 145, 146, 320, 327, 623
CseI GACGC 2 cut(s) 226, 715
Csp6I GTAC 2 cut(s) 513, 741
CspCI CAANNNNNGTGG 2 cut(s) 601, 636
CviAII CATG 4 cut(s) 487, 754, 854, 1079
CviQI GTAC 2 cut(s) 513, 741
DdeI CTNAG 9 cut(s) 375, 428, 549, 744, 764, 987, 995, 1062, 1118
DinI GGCGCC 1 cut(s) 157
DpnI GATC 5 cut(s) 344, 426, 452, 483, 504
DpnII GATC 5 cut(s) 342, 424, 450, 481, 502
EaeI YGGCCR 1 cut(s) 820
Eam1104I CTCTTC 5 cut(s) 69, 88, 127, 560, 1002
EarI CTCTTC 5 cut(s) 69, 88, 127, 560, 1002
Ecl136II GAGCTC 2 cut(s) 49, 994
Eco130I CCWWGG 3 cut(s) 612, 777, 1106
Eco24I GRGCYC 4 cut(s) 51, 149, 341, 996
Eco47I GGWCC 1 cut(s) 327
Eco53kI GAGCTC 2 cut(s) 49, 994
Eco57I CTGAAG 1 cut(s) 1026
EcoICRI GAGCTC 2 cut(s) 49, 994
EcoNI CCTNNNNNAGG 2 cut(s) 548, 731
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 8, 832
EcoT14I CCWWGG 3 cut(s) 612, 777, 1106
EcoT38I GRGCYC 4 cut(s) 51, 149, 341, 996
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
ErhI CCWWGG 3 cut(s) 612, 777, 1106
FaeI CATG 4 cut(s) 490, 757, 857, 1082
FatI CATG 4 cut(s) 486, 753, 853, 1078
FauI CCCGC 1 cut(s) 157
FauNDI CATATG 1 cut(s) 810
FbaI TGATCA 1 cut(s) 450
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 6 cut(s) 168, 181, 319, 828, 879, 1112
FokI GGATG 2 cut(s) 515, 1016
FriOI GRGCYC 4 cut(s) 51, 149, 341, 996
Fsp4HI GCNGC 6 cut(s) 168, 181, 319, 828, 879, 1112
FspBI CTAG 1 cut(s) 945
GlaI GCGC 3 cut(s) 157, 295, 1134
GluI GCNGC 6 cut(s) 168, 181, 319, 828, 879, 1112
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 7 cut(s) 134, 147, 167, 321, 625, 822, 1105
HapII CCGG 3 cut(s) 131, 143, 153
HgaI GACGC 2 cut(s) 226, 715
HhaI GCGC 3 cut(s) 158, 296, 1135
Hin1I GRCGYC 2 cut(s) 156, 707
Hin1II CATG 4 cut(s) 490, 757, 857, 1082
Hin6I GCGC 3 cut(s) 156, 294, 1133
HinP1I GCGC 3 cut(s) 156, 294, 1133
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 7 cut(s) 211, 237, 281, 302, 750, 927, 1066
HpaII CCGG 3 cut(s) 131, 143, 153
HphI GGTGA 2 cut(s) 491, 793
Hpy166II GTNNAC 3 cut(s) 31, 492, 859
Hpy188III TCNNGA 7 cut(s) 23, 244, 299, 346, 754, 864, 1070
Hpy8I GTNNAC 3 cut(s) 31, 492, 859
Hpy99I CGWCG 9 cut(s) 29, 38, 41, 206, 220, 257, 269, 396, 399
HpyAV CCTTC 7 cut(s) 102, 302, 343, 493, 595, 831, 906
HpyCH4IV ACGT 3 cut(s) 27, 39, 391
HpyCH4V TGCA 6 cut(s) 75, 175, 462, 598, 683, 859
HpyF10VI GCNNNNNNNGC 5 cut(s) 153, 164, 318, 706, 1111
HpyF3I CTNAG 9 cut(s) 375, 428, 549, 744, 764, 987, 995, 1062, 1118
HpySE526I ACGT 3 cut(s) 27, 39, 391
Hsp92I GRCGYC 2 cut(s) 156, 707
Hsp92II CATG 4 cut(s) 490, 757, 857, 1082
HspAI GCGC 3 cut(s) 156, 294, 1133
KasI GGCGCC 1 cut(s) 155
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 5 cut(s) 342, 424, 450, 481, 502
LguI GCTCTTC 1 cut(s) 560
LmnI GCTCC 7 cut(s) 46, 54, 188, 294, 991, 1094, 1140
Lsp1109I GCAGC 2 cut(s) 865, 1123
LweI GCATC 3 cut(s) 162, 511, 1035
MaeI CTAG 1 cut(s) 945
MaeII ACGT 3 cut(s) 27, 39, 391
MaeIII GTNAC 1 cut(s) 973
MalI GATC 5 cut(s) 344, 426, 452, 483, 504
MbiI CCGCTC 1 cut(s) 183
MboI GATC 5 cut(s) 342, 424, 450, 481, 502
MboII GAAGA 9 cut(s) 26, 56, 75, 114, 232, 272, 577, 1019, 1163
MfeI CAATTG 2 cut(s) 409, 516
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 5 cut(s) 51, 149, 341, 861, 996
MlsI TGGCCA 1 cut(s) 822
MluCI AATT 7 cut(s) 409, 416, 516, 648, 772, 872, 1015
MluNI TGGCCA 1 cut(s) 822
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 3 cut(s) 225, 239, 1057
Mox20I TGGCCA 1 cut(s) 822
MreI CGCCGGCG 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 152
MscI TGGCCA 1 cut(s) 822
MseI TTAA 2 cut(s) 660, 1124
MslI CAYNNNNRTG 2 cut(s) 575, 935
Msp20I TGGCCA 1 cut(s) 822
MspI CCGG 3 cut(s) 131, 143, 153
MspR9I CCNGG 3 cut(s) 10, 144, 834
MunI CAATTG 2 cut(s) 409, 516
MvaI CCWGG 2 cut(s) 10, 834
MvnI CGCG 3 cut(s) 170, 294, 827
MwoI GCNNNNNNNGC 5 cut(s) 153, 164, 318, 706, 1111
NaeI GCCGGC 1 cut(s) 154
NarI GGCGCC 1 cut(s) 156
NciI CCSGG 1 cut(s) 144
NdeI CATATG 1 cut(s) 810
NdeII GATC 5 cut(s) 342, 424, 450, 481, 502
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 4 cut(s) 490, 757, 857, 1082
NlaIV GGNNCC 8 cut(s) 6, 147, 148, 157, 290, 329, 504, 831
PagI TCATGA 1 cut(s) 753
PasI CCCWGGG 1 cut(s) 9
PciSI GCTCTTC 1 cut(s) 560
PcsI WCGNNNNNNNCGW 4 cut(s) 30, 33, 249, 261
PdiI GCCGGC 1 cut(s) 154
PfeI GAWTC 6 cut(s) 211, 281, 302, 750, 927, 1066
PkrI GCNGC 6 cut(s) 169, 182, 320, 829, 880, 1113
PleI GAGTC 1 cut(s) 245
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 245
Psp124BI GAGCTC 2 cut(s) 51, 996
Psp6I CCWGG 2 cut(s) 8, 832
PspGI CCWGG 2 cut(s) 8, 832
PspN4I GGNNCC 8 cut(s) 6, 147, 148, 157, 290, 329, 504, 831
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 6 cut(s) 133, 145, 146, 320, 327, 623
PstI CTGCAG 1 cut(s) 600
PstNI CAGNNNCTG 1 cut(s) 1117
PsuI RGATCY 1 cut(s) 502
RsaI GTAC 2 cut(s) 514, 742
RsaNI GTAC 2 cut(s) 513, 741
RseI CAYNNNNRTG 2 cut(s) 575, 935
SacI GAGCTC 2 cut(s) 51, 996
SapI GCTCTTC 1 cut(s) 560
SaqAI TTAA 2 cut(s) 660, 1124
SatI GCNGC 6 cut(s) 168, 181, 319, 828, 879, 1112
Sau3AI GATC 5 cut(s) 342, 424, 450, 481, 502
Sau96I GGNCC 6 cut(s) 133, 145, 146, 320, 327, 623
ScaI AGTACT 1 cut(s) 742
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 3 cut(s) 10, 144, 834
SduI GDGCHC 5 cut(s) 51, 149, 341, 861, 996
SfaNI GCATC 3 cut(s) 162, 511, 1035
SfcI CTRYAG 3 cut(s) 507, 596, 882
SfoI GGCGCC 1 cut(s) 157
SgrAI CRCCGGYG 1 cut(s) 152
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 2 cut(s) 575, 935
Sse9I AATT 7 cut(s) 409, 416, 516, 648, 772, 872, 1015
SspDI GGCGCC 1 cut(s) 155
SspI AATATT 1 cut(s) 799
SspMI CTAG 1 cut(s) 945
SstI GAGCTC 2 cut(s) 51, 996
StyD4I CCNGG 3 cut(s) 8, 142, 832
StyI CCWWGG 3 cut(s) 612, 777, 1106
TaiI ACGT 3 cut(s) 30, 42, 394
TaqI TCGA 5 cut(s) 24, 243, 300, 341, 1058
TasI AATT 7 cut(s) 409, 416, 516, 648, 772, 872, 1015
TatI WGTACW 1 cut(s) 740
TauI GCSGC 4 cut(s) 170, 183, 321, 830
TfiI GAWTC 6 cut(s) 211, 281, 302, 750, 927, 1066
Tru1I TTAA 2 cut(s) 660, 1124
Tru9I TTAA 2 cut(s) 660, 1124
TscAI CASTG 2 cut(s) 685, 1122
TseI GCWGC 2 cut(s) 878, 1111
TspDTI ATGAA 5 cut(s) 114, 217, 770, 888, 1008
TspGWI ACGGA 1 cut(s) 718
TspRI CASTG 2 cut(s) 685, 1122
VneI GTGCAC 1 cut(s) 857
VpaK11BI GGWCC 1 cut(s) 327
XagI CCTNNNNNAGG 2 cut(s) 548, 731
XapI RAATTY 2 cut(s) 416, 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 1040
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 945
ZrmI AGTACT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.