RchiOBHm_Chr7g0178441

Domain of unknown function (DUF4539)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
1098650 .. 1101229
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15901

Sequence Viewer

Length: 1194 bp
ATGGAACCCTGGGAAGAAGCTCTCGACGTAGACGACGACGTTTCGGAGCTCCCCTCTTTCTCTCTTCGCCCTTGCAACCACTCTTCCTCTCCTTCCCTAAACCCCCTACCCAAACCCTCCTCTCCATCTCCGGCCCTCATTCCGGGCCCCGCCGGCGCCGTTCAGGCCGCGATGCACCGCCGCTCCCAGACCTCCTCCTCCTCCTCCGACGAGCCGATTCCGACGCAGGAGTTCATAAGGAGAGTCTTCGAGAACGGCGACGAGGAAGACGACGATTTCGCCGCCGATTCTTGGCTCCACGCTCTCGATTCAGAAGGCGGTGGCGGCCCTCGGACCCCTTTGGGTTCGATCAAGAAGGGGCTTGGCACTCACAGAGTAGCTAAGGTTGTTGCTATGATCAAATCTTGCACCCCAAATGGTCTTGGTGATCTCATGTTGACTTTGAAGGATCCTACAGGTACAATTGATGCTACCATCCACCGCAAAGCCCTTTCTGAGGGAGAGTTTGGGACGAGCATTTCTGTGGGTGCGGTTTTGGTTCTGCAGAAGGTTGCTGTGTTTTCCCCCTCACACTCTGCATGTTATCTTAATGTGACGGTGAGCAACATTGTCAAGGTCATTTCCAAGGATAGTGGGCCTCTTGCCACAAAAGATTTTCCAATTTCGTCAGTTAATACTCCTGCTCTCATCTGTGCAGAAAATAGTAAAATGTTACGGATGCCACAAGAAAAACTCCTCCCATCACAGGATAGTACTCAGCGAATCATGAAATGTCTGAGACAAAATTCCAAGGTGATTGGGAGTGAAAATATTGAGAAGCATATGGAAACTGGCCACGCGGCACCAGGAAGGATTTTCTCTGCTCATGTGCACTCTGGAAGCCAATTTGCTGCTGTAGAGATAGAGCCTTCATTGGTGGAAAAGGCTATGCCTAATGGAATCACTAAAATGTCTGTTAGAGAGGACATTATTGATACAGAACAAGTAACTGGGGTTGCTGAGGAGCTCAGAATGGCTGAAGAGGACAATTCATCAAGCATCATCCAACCCATTAGTGGTTCAGCAAACTCGACTGAGATTCTTGATAATCATGGGAGAATAACAGGAGCAAAAAGGCCAAGGCAGCCACTGAGCTTAACAACTGCGCTCCCAGACTACACAGAAGAACAACTAAATCTGTTTGACTTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

397

Amino Acids

42.64

Weight (kDa)

5.11

Isoelectric Point (pI)

61.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HROB PF15072 125 - 210 2.2e-29 Homologous recombination OB-fold protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 155, 841
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 30
AccII CGCG 2 cut(s) 170, 839
AclWI GGATC 2 cut(s) 443, 456
AcoI YGGCCR 1 cut(s) 832
AcsI RAATTY 1 cut(s) 784
AcuI CTGAAG 1 cut(s) 1038
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 2 cut(s) 460, 754
AfiI CCNNNNNNNGG 5 cut(s) 142, 291, 496, 745, 1055
AgsI TTSAA 1 cut(s) 445
AjnI CCWGG 2 cut(s) 8, 844
AluBI AGCT 5 cut(s) 20, 49, 380, 1006, 1134
AluI AGCT 5 cut(s) 20, 49, 380, 1006, 1134
Alw21I GWGCWC 3 cut(s) 51, 873, 1008
Alw26I GTCTC 1 cut(s) 772
Alw44I GTGCAC 1 cut(s) 869
AlwI GGATC 2 cut(s) 443, 456
AlwNI CAGNNNCTG 1 cut(s) 1129
AoxI GGCC 7 cut(s) 132, 145, 165, 325, 635, 832, 1115
ApaI GGGCCC 1 cut(s) 149
ApaLI GTGCAC 1 cut(s) 869
ApeKI GCWGC 2 cut(s) 890, 1123
ApoI RAATTY 1 cut(s) 784
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 2 cut(s) 158, 1147
AspS9I GGNCC 6 cut(s) 133, 145, 146, 326, 333, 635
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 437, 610, 805
AvaII GGWCC 1 cut(s) 333
BaeGI GKGCMC 2 cut(s) 149, 873
BalI TGGCCA 1 cut(s) 834
BamHI GGATCC 1 cut(s) 448
BanI GGYRCC 2 cut(s) 155, 841
BanII GRGCYC 3 cut(s) 51, 149, 1008
BbsI GAAGAC 2 cut(s) 238, 273
Bbv12I GWGCWC 3 cut(s) 51, 873, 1008
BbvCI CCTCAGC 1 cut(s) 999
BbvI GCAGC 2 cut(s) 877, 1135
BccI CCATC 3 cut(s) 133, 482, 748
BceAI ACGGC 2 cut(s) 143, 271
BciT130I CCWGG 2 cut(s) 10, 846
BclI TGATCA 1 cut(s) 396
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 772
BfmI CTRYAG 3 cut(s) 453, 542, 894
BfoI RGCGCY 1 cut(s) 159
BglI GCCNNNNNGGC 2 cut(s) 153, 164
BisI GCNGC 7 cut(s) 168, 181, 282, 325, 840, 891, 1124
BlsI GCNGC 7 cut(s) 169, 182, 283, 326, 841, 892, 1125
BmcAI AGTACT 1 cut(s) 754
Bme1390I CCNGG 3 cut(s) 10, 144, 846
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 6 cut(s) 133, 145, 146, 326, 333, 635
BmiI GGNNCC 8 cut(s) 6, 147, 148, 157, 296, 335, 450, 843
BmrFI CCNGG 3 cut(s) 10, 144, 846
BmrI ACTGGG 1 cut(s) 999
BmsI GCATC 4 cut(s) 162, 457, 708, 1047
BmuI ACTGGG 1 cut(s) 999
BpiI GAAGAC 2 cut(s) 238, 273
BplI GAGNNNNNCTC 2 cut(s) 38, 70
Bpu10I CCTNAGC 2 cut(s) 381, 999
BpuMI CCSGG 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 6 cut(s) 8, 9, 329, 624, 789, 1118
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 291, 496, 745, 1055
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 835, 994
BseBI CCWGG 2 cut(s) 10, 846
BseDI CCNNGG 6 cut(s) 8, 9, 329, 624, 789, 1118
BseGI GGATG 3 cut(s) 474, 723, 1041
BseLI CCNNNNNNNGG 5 cut(s) 142, 291, 496, 745, 1055
BseMII CTCAG 7 cut(s) 486, 767, 770, 990, 1021, 1065, 1121
BseNI ACTGG 2 cut(s) 835, 994
BseRI GAGGAG 7 cut(s) 109, 184, 187, 190, 193, 725, 1016
BseSI GKGCMC 2 cut(s) 149, 873
BseXI GCAGC 2 cut(s) 877, 1135
BsgI GTGCAG 1 cut(s) 714
Bsh1236I CGCG 2 cut(s) 170, 839
BshFI GGCC 7 cut(s) 134, 147, 167, 327, 637, 834, 1117
BshNI GGYRCC 2 cut(s) 155, 841
BsiHKAI GWGCWC 3 cut(s) 51, 873, 1008
BsiSI CCGG 3 cut(s) 131, 143, 153
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 5 cut(s) 142, 291, 496, 745, 1055
BsmAI GTCTC 1 cut(s) 772
BsmFI GGGAC 1 cut(s) 523
BsnI GGCC 7 cut(s) 134, 147, 167, 327, 637, 834, 1117
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 4 cut(s) 51, 149, 873, 1008
Bsp143I GATC 4 cut(s) 348, 396, 427, 448
BspANI GGCC 7 cut(s) 134, 147, 167, 327, 637, 834, 1117
BspCNI CTCAG 7 cut(s) 487, 768, 769, 991, 1020, 1066, 1122
BspFNI CGCG 2 cut(s) 170, 839
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 8 cut(s) 6, 147, 148, 157, 296, 335, 450, 843
BspMAI CTGCAG 1 cut(s) 546
BspPI GGATC 2 cut(s) 443, 456
BspT107I GGYRCC 2 cut(s) 155, 841
BsrBI CCGCTC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 2 cut(s) 835, 994
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 6 cut(s) 8, 9, 329, 624, 789, 1118
BssMI GATC 4 cut(s) 348, 396, 427, 448
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 3 cut(s) 624, 789, 1118
Bst2UI CCWGG 2 cut(s) 10, 846
Bst4CI ACNGT 1 cut(s) 598
Bst6I CTCTTC 3 cut(s) 69, 88, 1014
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 8 cut(s) 381, 495, 756, 776, 999, 1007, 1074, 1130
BstENI CCTNNNNNAGG 1 cut(s) 494
BstF5I GGATG 3 cut(s) 474, 723, 1041
BstFNI CGCG 2 cut(s) 170, 839
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 2 cut(s) 158, 1147
BstKTI GATC 4 cut(s) 351, 399, 430, 451
BstMAI GTCTC 1 cut(s) 772
BstMBI GATC 4 cut(s) 348, 396, 427, 448
BstMWI GCNNNNNNNGC 4 cut(s) 153, 164, 324, 1123
BstNI CCWGG 2 cut(s) 10, 846
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 3 cut(s) 8, 142, 844
BstSFI CTRYAG 3 cut(s) 453, 542, 894
BstSLI GKGCMC 2 cut(s) 149, 873
BstUI CGCG 2 cut(s) 170, 839
BstV1I GCAGC 2 cut(s) 877, 1135
BstV2I GAAGAC 2 cut(s) 238, 273
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 7 cut(s) 134, 147, 167, 327, 637, 834, 1117
BtgZI GCGATG 1 cut(s) 185
BtsCI GGATG 3 cut(s) 474, 723, 1041
BtsIMutI CAGTG 1 cut(s) 1127
Cac8I GCNNGC 1 cut(s) 154
CaiI CAGNNNCTG 1 cut(s) 1129
CciI TCATGA 1 cut(s) 765
CfoI GCGC 2 cut(s) 158, 1147
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 6 cut(s) 133, 145, 146, 326, 333, 635
CseI GACGC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 459, 753
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CviAII CATG 5 cut(s) 433, 579, 766, 866, 1091
CviQI GTAC 2 cut(s) 459, 753
DdeI CTNAG 8 cut(s) 381, 495, 756, 776, 999, 1007, 1074, 1130
DinI GGCGCC 1 cut(s) 157
DpnI GATC 4 cut(s) 350, 398, 429, 450
DpnII GATC 4 cut(s) 348, 396, 427, 448
EaeI YGGCCR 1 cut(s) 832
Eam1104I CTCTTC 3 cut(s) 69, 88, 1014
EarI CTCTTC 3 cut(s) 69, 88, 1014
Ecl136II GAGCTC 2 cut(s) 49, 1006
Eco130I CCWWGG 3 cut(s) 624, 789, 1118
Eco24I GRGCYC 3 cut(s) 51, 149, 1008
Eco47I GGWCC 1 cut(s) 333
Eco53kI GAGCTC 2 cut(s) 49, 1006
Eco57I CTGAAG 1 cut(s) 1038
EcoICRI GAGCTC 2 cut(s) 49, 1006
EcoNI CCTNNNNNAGG 1 cut(s) 494
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 8, 844
EcoT14I CCWWGG 3 cut(s) 624, 789, 1118
EcoT38I GRGCYC 3 cut(s) 51, 149, 1008
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
ErhI CCWWGG 3 cut(s) 624, 789, 1118
FaeI CATG 5 cut(s) 436, 582, 769, 869, 1094
FaqI GGGAC 1 cut(s) 523
FatI CATG 5 cut(s) 432, 578, 765, 865, 1090
FauI CCCGC 1 cut(s) 157
FauNDI CATATG 1 cut(s) 822
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 7 cut(s) 168, 181, 282, 325, 840, 891, 1124
FokI GGATG 3 cut(s) 461, 730, 1028
FriOI GRGCYC 3 cut(s) 51, 149, 1008
Fsp4HI GCNGC 7 cut(s) 168, 181, 282, 325, 840, 891, 1124
GlaI GCGC 2 cut(s) 157, 1146
GluI GCNGC 7 cut(s) 168, 181, 282, 325, 840, 891, 1124
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 7 cut(s) 134, 147, 167, 327, 637, 834, 1117
HapII CCGG 3 cut(s) 131, 143, 153
HgaI GACGC 1 cut(s) 232
HhaI GCGC 2 cut(s) 158, 1147
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 5 cut(s) 436, 582, 769, 869, 1094
Hin6I GCGC 2 cut(s) 156, 1145
HinP1I GCGC 2 cut(s) 156, 1145
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HinfI GANTC 7 cut(s) 217, 243, 287, 308, 762, 939, 1078
HpaII CCGG 3 cut(s) 131, 143, 153
HphI GGTGA 3 cut(s) 437, 610, 805
Hpy166II GTNNAC 3 cut(s) 31, 438, 871
Hpy188I TCNGA 8 cut(s) 46, 208, 222, 313, 333, 496, 777, 1010
Hpy188III TCNNGA 7 cut(s) 23, 250, 305, 352, 766, 876, 1082
Hpy8I GTNNAC 3 cut(s) 31, 438, 871
Hpy99I CGWCG 7 cut(s) 29, 38, 41, 212, 226, 263, 275
HpyAV CCTTC 7 cut(s) 102, 308, 349, 439, 541, 843, 918
HpyCH4III ACNGT 1 cut(s) 598
HpyCH4IV ACGT 2 cut(s) 27, 39
HpyCH4V TGCA 7 cut(s) 75, 175, 408, 544, 578, 695, 871
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 164, 324, 1123
HpyF3I CTNAG 8 cut(s) 381, 495, 756, 776, 999, 1007, 1074, 1130
HpySE526I ACGT 2 cut(s) 27, 39
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 5 cut(s) 436, 582, 769, 869, 1094
HspAI GCGC 2 cut(s) 156, 1145
KasI GGCGCC 1 cut(s) 155
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 4 cut(s) 348, 396, 427, 448
LmnI GCTCC 7 cut(s) 46, 54, 188, 300, 1003, 1106, 1152
Lsp1109I GCAGC 2 cut(s) 877, 1135
LweI GCATC 4 cut(s) 162, 457, 708, 1047
MaeII ACGT 2 cut(s) 27, 39
MaeIII GTNAC 3 cut(s) 592, 711, 985
MalI GATC 4 cut(s) 350, 398, 429, 450
MbiI CCGCTC 1 cut(s) 183
MboI GATC 4 cut(s) 348, 396, 427, 448
MboII GAAGA 7 cut(s) 26, 56, 75, 238, 278, 1031, 1175
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 4 cut(s) 51, 149, 873, 1008
MlsI TGGCCA 1 cut(s) 834
MluCI AATT 5 cut(s) 462, 660, 784, 884, 1027
MluNI TGGCCA 1 cut(s) 834
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 3 cut(s) 231, 245, 1069
Mox20I TGGCCA 1 cut(s) 834
MreI CGCCGGCG 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 152
MscI TGGCCA 1 cut(s) 834
MseI TTAA 3 cut(s) 588, 672, 1136
MslI CAYNNNNRTG 2 cut(s) 521, 947
Msp20I TGGCCA 1 cut(s) 834
MspI CCGG 3 cut(s) 131, 143, 153
MspR9I CCNGG 3 cut(s) 10, 144, 846
MunI CAATTG 1 cut(s) 462
MvaI CCWGG 2 cut(s) 10, 846
MvnI CGCG 2 cut(s) 170, 839
MwoI GCNNNNNNNGC 4 cut(s) 153, 164, 324, 1123
NaeI GCCGGC 1 cut(s) 154
NarI GGCGCC 1 cut(s) 156
NciI CCSGG 1 cut(s) 144
NdeI CATATG 1 cut(s) 822
NdeII GATC 4 cut(s) 348, 396, 427, 448
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 5 cut(s) 436, 582, 769, 869, 1094
NlaIV GGNNCC 8 cut(s) 6, 147, 148, 157, 296, 335, 450, 843
NmuCI GTSAC 1 cut(s) 592
NspI RCATGY 1 cut(s) 582
PagI TCATGA 1 cut(s) 765
PasI CCCWGGG 1 cut(s) 9
PcsI WCGNNNNNNNCGW 4 cut(s) 30, 33, 255, 267
PdiI GCCGGC 1 cut(s) 154
PfeI GAWTC 6 cut(s) 217, 287, 308, 762, 939, 1078
PkrI GCNGC 7 cut(s) 169, 182, 283, 326, 841, 892, 1125
PleI GAGTC 1 cut(s) 251
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 251
Psp124BI GAGCTC 2 cut(s) 51, 1008
Psp6I CCWGG 2 cut(s) 8, 844
PspGI CCWGG 2 cut(s) 8, 844
PspN4I GGNNCC 8 cut(s) 6, 147, 148, 157, 296, 335, 450, 843
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 6 cut(s) 133, 145, 146, 326, 333, 635
PstI CTGCAG 1 cut(s) 546
PstNI CAGNNNCTG 1 cut(s) 1129
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 2 cut(s) 460, 754
RsaNI GTAC 2 cut(s) 459, 753
RseI CAYNNNNRTG 2 cut(s) 521, 947
SacI GAGCTC 2 cut(s) 51, 1008
SaqAI TTAA 3 cut(s) 588, 672, 1136
SatI GCNGC 7 cut(s) 168, 181, 282, 325, 840, 891, 1124
Sau3AI GATC 4 cut(s) 348, 396, 427, 448
Sau96I GGNCC 6 cut(s) 133, 145, 146, 326, 333, 635
ScaI AGTACT 1 cut(s) 754
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 3 cut(s) 10, 144, 846
SduI GDGCHC 4 cut(s) 51, 149, 873, 1008
SfaNI GCATC 4 cut(s) 162, 457, 708, 1047
SfcI CTRYAG 3 cut(s) 453, 542, 894
SfoI GGCGCC 1 cut(s) 157
SgrAI CRCCGGYG 1 cut(s) 152
SinI GGWCC 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 521, 947
Sse9I AATT 5 cut(s) 462, 660, 784, 884, 1027
SspDI GGCGCC 1 cut(s) 155
SspI AATATT 1 cut(s) 811
SstI GAGCTC 2 cut(s) 51, 1008
StyD4I CCNGG 3 cut(s) 8, 142, 844
StyI CCWWGG 3 cut(s) 624, 789, 1118
TaaI ACNGT 1 cut(s) 598
TaiI ACGT 2 cut(s) 30, 42
TaqI TCGA 5 cut(s) 24, 249, 306, 347, 1070
TasI AATT 5 cut(s) 462, 660, 784, 884, 1027
TatI WGTACW 1 cut(s) 752
TauI GCSGC 5 cut(s) 170, 183, 284, 327, 842
TfiI GAWTC 6 cut(s) 217, 287, 308, 762, 939, 1078
Tru1I TTAA 3 cut(s) 588, 672, 1136
Tru9I TTAA 3 cut(s) 588, 672, 1136
TscAI CASTG 1 cut(s) 1134
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 2 cut(s) 890, 1123
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 4 cut(s) 223, 782, 900, 1020
TspGWI ACGGA 1 cut(s) 730
TspRI CASTG 1 cut(s) 1134
VneI GTGCAC 1 cut(s) 869
VpaK11BI GGWCC 1 cut(s) 333
XagI CCTNNNNNAGG 1 cut(s) 494
XapI RAATTY 1 cut(s) 784
XceI RCATGY 1 cut(s) 582
XcmI CCANNNNNNNNNTGG 1 cut(s) 1052
XmiI GTMKAC 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.