Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006732

Physical Location & Seq

Genomic Coordinates Reverse (-)

1152401 .. 1170819

Gene Structure 18419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG015800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAACCCTGGGAAGAAGCTCTCGACGTAGACGACGACGTTTCGGAGCTCCCCTCTTTCTCTCTTCGCCCTTGCAACCACTCTTCCTCTCCTTCCCTAGACCCCCTACCCAAACCCTCCTCTCCATCTCCGGCCCTCATTCCGGGCCCCGCCGGCGCCGTTCAGGCCGCGATGCACCGCCGCTCCCAGACCTCCTCCTCCTCCGACGAGCCGATTCCGACGCAGGAGTTCATAAGGAGAGTCTTCGAGAACGGCGACGAGGAAGACGACGATTTCGCCGCCGATTCTTGGCTCCGCGCTCTCGATTCAGAAGGCGGTGGCGGCCCTCGGACCCCTTTGGGTTCGATCAAGAAGGGGCTTGGCACTCACAGAGTAGCTAAGGTTGTTGCTATGATCAAATCTTGCACCCCAAATGGTCTTGGTGATCTCATGTCATTTCCAAGGATAGTGGGCCTCTTGCCACAAAAGATTTTCCAATTTCGTCAGTTAATACTCCTGCTCTCATCAGTGCAGAAAGTAGTAAAATGTTACGGATGCCACAAGAATATTCCGCCCGTCACAGGAAAGTACTCAGCGAATCATGAAATATCTGAGACAAAATTCCAAGGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4539

Protein Analysis

204

Amino Acids

22.11

Weight (kDa)

5.55

Isoelectric Point (pI)

65.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48580 AT1G48580 AT1G48580
fragaria_vesca	FvH4_5g17330
malus_domestica	MD06G1227000.v1.1
prunus_persica	Prupe.5G233500_v2.0.a1
pyrus_communis	pycom06g20330
rosa_chinensis	RchiOBHm_Chr7g0178441
rosa_laevigata	RLG00000005448
rosa_multiflora	Rmu_co8204114.1_g000001 Rmu_sc0014237.1_g000005 Rmu_sc0014842.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274920 Rroxscaffold_3G00274950
rosa_rugosa	Rorug06G0416800 Rorug06G0417000
rosa_samantha	Rh5BG525600 Rh5CG549200 Rh5DG537600 Rh7AG015500 Rh7BG015000 Rh7CG015700 Rh7CG015800 Rh7DG015400
rosa_wichuraiana	Rw0G010170 Rw7G001220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	2 cut(s)	170, 297
AciI	CCGC	9 cut(s)	150, 168, 178, 181, 279, 295, 315, 321, 551
AcsI	RAATTY	1 cut(s)	599
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	3 cut(s)	142, 288, 560
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	3 cut(s)	20, 49, 377
AluI	AGCT	3 cut(s)	20, 49, 377
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	587
AoxI	GGCC	5 cut(s)	132, 145, 165, 322, 451
ApaI	GGGCCC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	599
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspLEI	GCGC	2 cut(s)	158, 299
AspS9I	GGNCC	6 cut(s)	133, 145, 146, 323, 330, 451
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	51, 149
BbsI	GAAGAC	2 cut(s)	235, 270
Bbv12I	GWGCWC	1 cut(s)	51
BccI	CCATC	1 cut(s)	133
BceAI	ACGGC	2 cut(s)	143, 268
BciT130I	CCWGG	1 cut(s)	10
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	159
BglI	GCCNNNNNGGC	2 cut(s)	153, 164
BisI	GCNGC	4 cut(s)	168, 181, 279, 322
BlsI	GCNGC	4 cut(s)	169, 182, 280, 323
BmcAI	AGTACT	1 cut(s)	569
Bme1390I	CCNGG	2 cut(s)	10, 144
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	6 cut(s)	133, 145, 146, 323, 330, 451
BmiI	GGNNCC	6 cut(s)	6, 147, 148, 157, 293, 332
BmrFI	CCNGG	2 cut(s)	10, 144
BmsI	GCATC	2 cut(s)	162, 524
BpiI	GAAGAC	2 cut(s)	235, 270
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
Bpu10I	CCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	5 cut(s)	8, 9, 326, 440, 604
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 288, 560
Bse118I	RCCGGY	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	5 cut(s)	8, 9, 326, 440, 604
BseGI	GGATG	1 cut(s)	539
BseLI	CCNNNNNNNGG	3 cut(s)	142, 288, 560
BseMII	CTCAG	2 cut(s)	582, 585
BseRI	GAGGAG	4 cut(s)	109, 184, 187, 190
BseSI	GKGCMC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	2 cut(s)	170, 297
BshFI	GGCC	5 cut(s)	134, 147, 167, 324, 453
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	3 cut(s)	131, 143, 153
BslI	CCNNNNNNNGG	3 cut(s)	142, 288, 560
BsmAI	GTCTC	1 cut(s)	587
BsnI	GGCC	5 cut(s)	134, 147, 167, 324, 453
Bsp120I	GGGCCC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	51, 149
Bsp143I	GATC	3 cut(s)	345, 393, 424
BspACI	CCGC	9 cut(s)	150, 168, 178, 181, 279, 295, 315, 321, 551
BspANI	GGCC	5 cut(s)	134, 147, 167, 324, 453
BspCNI	CTCAG	2 cut(s)	583, 584
BspFNI	CGCG	2 cut(s)	170, 297
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	6 cut(s)	6, 147, 148, 157, 293, 332
BspT107I	GGYRCC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	5 cut(s)	8, 9, 326, 440, 604
BssMI	GATC	3 cut(s)	345, 393, 424
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	440, 604
Bst2UI	CCWGG	1 cut(s)	10
Bst6I	CTCTTC	2 cut(s)	69, 88
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	3 cut(s)	378, 571, 591
BstF5I	GGATG	1 cut(s)	539
BstFNI	CGCG	2 cut(s)	170, 297
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	2 cut(s)	158, 299
BstKTI	GATC	3 cut(s)	348, 396, 427
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	3 cut(s)	345, 393, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 164, 321
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	8, 142
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	2 cut(s)	170, 297
BstV2I	GAAGAC	2 cut(s)	235, 270
BsuRI	GGCC	5 cut(s)	134, 147, 167, 324, 453
BtgZI	GCGATG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	539
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	154
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	2 cut(s)	158, 299
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	6 cut(s)	133, 145, 146, 323, 330, 451
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	568
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	2 cut(s)	430, 581
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	3 cut(s)	378, 571, 591
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	3 cut(s)	347, 395, 426
DpnII	GATC	3 cut(s)	345, 393, 424
Eam1104I	CTCTTC	2 cut(s)	69, 88
EarI	CTCTTC	2 cut(s)	69, 88
EciI	GGCGGA	1 cut(s)	540
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	440, 604
Eco24I	GRGCYC	2 cut(s)	51, 149
Eco47I	GGWCC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	2 cut(s)	440, 604
EcoT38I	GRGCYC	2 cut(s)	51, 149
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	440, 604
FaeI	CATG	2 cut(s)	433, 584
FaiI	YATR	4 cut(s)	233, 392, 431, 582
FatI	CATG	2 cut(s)	429, 580
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	168, 181, 279, 322
FokI	GGATG	1 cut(s)	546
FriOI	GRGCYC	2 cut(s)	51, 149
Fsp4HI	GCNGC	4 cut(s)	168, 181, 279, 322
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	2 cut(s)	157, 298
GluI	GCNGC	4 cut(s)	168, 181, 279, 322
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	5 cut(s)	134, 147, 167, 324, 453
HapII	CCGG	3 cut(s)	131, 143, 153
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	2 cut(s)	158, 299
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	433, 584
Hin6I	GCGC	2 cut(s)	156, 297
HinP1I	GCGC	2 cut(s)	156, 297
HinfI	GANTC	5 cut(s)	214, 240, 284, 305, 577
HpaII	CCGG	3 cut(s)	131, 143, 153
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	6 cut(s)	46, 205, 219, 310, 330, 592
Hpy188III	TCNNGA	5 cut(s)	23, 247, 302, 349, 581
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	7 cut(s)	29, 38, 41, 209, 223, 260, 272
HpyAV	CCTTC	3 cut(s)	102, 305, 346
HpyCH4IV	ACGT	2 cut(s)	27, 39
HpyCH4V	TGCA	4 cut(s)	75, 175, 405, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 164, 321
HpyF3I	CTNAG	3 cut(s)	378, 571, 591
HpySE526I	ACGT	2 cut(s)	27, 39
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	433, 584
HspAI	GCGC	2 cut(s)	156, 297
KasI	GGCGCC	1 cut(s)	155
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	345, 393, 424
LmnI	GCTCC	4 cut(s)	46, 54, 188, 297
LpnPI	CCDG	9 cut(s)	22, 144, 149, 156, 166, 200, 209, 509, 546
LweI	GCATC	2 cut(s)	162, 524
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	2 cut(s)	27, 39
MaeIII	GTNAC	2 cut(s)	527, 556
MalI	GATC	3 cut(s)	347, 395, 426
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	3 cut(s)	345, 393, 424
MboII	GAAGA	5 cut(s)	26, 56, 75, 235, 275
MhlI	GDGCHC	2 cut(s)	51, 149
MluCI	AATT	2 cut(s)	476, 599
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	2 cut(s)	228, 242
MreI	CGCCGGCG	1 cut(s)	152
MroNI	GCCGGC	1 cut(s)	152
MseI	TTAA	2 cut(s)	488, 613
MspI	CCGG	3 cut(s)	131, 143, 153
MspR9I	CCNGG	2 cut(s)	10, 144
MvaI	CCWGG	1 cut(s)	10
MvnI	CGCG	2 cut(s)	170, 297
MwoI	GCNNNNNNNGC	3 cut(s)	153, 164, 321
NaeI	GCCGGC	1 cut(s)	154
NarI	GGCGCC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	345, 393, 424
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	2 cut(s)	433, 584
NlaIV	GGNNCC	6 cut(s)	6, 147, 148, 157, 293, 332
NmuCI	GTSAC	1 cut(s)	556
PagI	TCATGA	1 cut(s)	580
PasI	CCCWGGG	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	4 cut(s)	30, 33, 252, 264
PdiI	GCCGGC	1 cut(s)	154
PfeI	GAWTC	4 cut(s)	214, 284, 305, 577
PkrI	GCNGC	4 cut(s)	169, 182, 280, 323
PleI	GAGTC	1 cut(s)	248
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	6 cut(s)	6, 147, 148, 157, 293, 332
PspOMI	GGGCCC	1 cut(s)	145
PspPI	GGNCC	6 cut(s)	133, 145, 146, 323, 330, 451
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	488, 613
SatI	GCNGC	4 cut(s)	168, 181, 279, 322
Sau3AI	GATC	3 cut(s)	345, 393, 424
Sau96I	GGNCC	6 cut(s)	133, 145, 146, 323, 330, 451
ScaI	AGTACT	1 cut(s)	569
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	10, 144
SduI	GDGCHC	2 cut(s)	51, 149
SetI	ASST	8 cut(s)	22, 30, 42, 51, 194, 379, 384, 610
SfaNI	GCATC	2 cut(s)	162, 524
SfoI	GGCGCC	1 cut(s)	157
SgrAI	CRCCGGYG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	330
Sse9I	AATT	2 cut(s)	476, 599
SsiI	CCGC	9 cut(s)	150, 168, 178, 181, 279, 295, 315, 321, 551
SspDI	GGCGCC	1 cut(s)	155
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	8, 142
StyI	CCWWGG	2 cut(s)	440, 604
TaiI	ACGT	2 cut(s)	30, 42
TaqI	TCGA	4 cut(s)	24, 246, 303, 344
TasI	AATT	2 cut(s)	476, 599
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	4 cut(s)	170, 183, 281, 324
TfiI	GAWTC	4 cut(s)	214, 284, 305, 577
Tru1I	TTAA	2 cut(s)	488, 613
Tru9I	TTAA	2 cut(s)	488, 613
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	1 cut(s)	556
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	2 cut(s)	220, 597
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	1 cut(s)	513
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	1 cut(s)	98
ZrmI	AGTACT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.