Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006732

Physical Location & Seq

Genomic Coordinates Forward (+)

55619784 .. 55622968

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0417000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCAATCTCGCCTTATGGCGCAAGGCTTCTCACAAAGAACCCTGGAATCGACTACGACACTACTAGAATTTTGCTCTTAGACATCACGACAATTACATCAGTGAGGAATTCACGCGATCTCCCCCCTCCTCCTCCTTCTCGTCCATCTTCCTTTTCCAATCCATGTCTCTCTCTTCTTCATTGGCTCGCCGGCCTCACTTCCATGGTTTCTCCTCCTTCCTCTACTCAAACCCTCAGCGACAGATCTGATTTCAAGCCAACCGAAGTTCTTGTAGTTAGACGAGACTTGAAGATGACAACTAGAAAAATTGCATCTCAGTATGCTGCAACTGGCATGTATGCAGAACTGATGCAAAGGGTTCTTATGGATGCGTATCATTTGGGTAACCTCCAACCTTCAATTGATCAGCTTCCTGAAAGATATAATTCCATGGTTTCCATGGATGGTAATGCAGAACTTCAAATATTATCATTCAAAGCCACTAAGATTAGGCTTTTACGTAGCCTATGTATTCACACTCAAACAATGCAGTTGCAATTTAAGTGGATATCTGTGAAACTAGTTCTCAACTCATTGGCACATGTTTTTGCTAGGTTCATTCGCAGCTACACCAAGGACTGGAAATTCAAGTTACAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4539

Protein Analysis

214

Amino Acids

24.34

Weight (kDa)

9.96

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48580 AT1G48580 AT1G48580
fragaria_vesca	FvH4_5g17330
malus_domestica	MD06G1227000.v1.1
prunus_persica	Prupe.5G233500_v2.0.a1
pyrus_communis	pycom06g20330
rosa_chinensis	RchiOBHm_Chr7g0178441
rosa_laevigata	RLG00000005448
rosa_multiflora	Rmu_co8204114.1_g000001 Rmu_sc0014237.1_g000005 Rmu_sc0014842.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274920 Rroxscaffold_3G00274950
rosa_rugosa	Rorug06G0416800 Rorug06G0417000
rosa_samantha	Rh5BG525600 Rh5CG549200 Rh5DG537600 Rh7AG015500 Rh7BG015000 Rh7CG015700 Rh7CG015800 Rh7DG015400
rosa_wichuraiana	Rw0G010170 Rw7G001220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	621
AccII	CGCG	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	69, 109, 626
AfiI	CCNNNNNNNGG	1 cut(s)	621
AflIII	ACRYGT	1 cut(s)	583
AgsI	TTSAA	6 cut(s)	256, 292, 402, 464, 478, 631
AhlI	ACTAGT	1 cut(s)	562
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	2 cut(s)	412, 609
AluI	AGCT	2 cut(s)	412, 609
Alw26I	GTCTC	2 cut(s)	173, 279
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	326, 606
ApoI	RAATTY	3 cut(s)	69, 109, 626
AspLEI	GCGC	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	313, 618
BccI	CCATC	2 cut(s)	154, 440
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	173, 279
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	4 cut(s)	66, 303, 563, 594
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	2 cut(s)	327, 607
BlsI	GCNGC	2 cut(s)	328, 608
Bme1390I	CCNGG	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	3 cut(s)	323, 342, 361
Bpu10I	CCTNAGC	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	5 cut(s)	43, 204, 432, 441, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	337, 626
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	5 cut(s)	43, 204, 432, 441, 615
BseGI	GGATG	2 cut(s)	376, 451
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	2 cut(s)	250, 332
BseNI	ACTGG	2 cut(s)	337, 626
BseRI	GAGGAG	3 cut(s)	120, 123, 204
BseXI	GCAGC	2 cut(s)	313, 618
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmAI	GTCTC	2 cut(s)	173, 279
BsnI	GGCC	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	118, 245, 406
Bsp19I	CCATGG	3 cut(s)	204, 432, 441
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	249, 331
BspFNI	CGCG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	337, 626
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	5 cut(s)	43, 204, 432, 441, 615
BssMI	GATC	3 cut(s)	118, 245, 406
BssT1I	CCWWGG	4 cut(s)	204, 432, 441, 615
Bst2UI	CCWGG	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	189, 193
BstDEI	CTNAG	4 cut(s)	79, 236, 318, 486
BstDSI	CCRYGG	3 cut(s)	204, 432, 441
BstEII	GGTNACC	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	376, 451
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	3 cut(s)	121, 248, 409
BstMAI	GTCTC	2 cut(s)	173, 279
BstMBI	GATC	3 cut(s)	118, 245, 406
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	2 cut(s)	340, 587
BstPI	GGTNACC	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	43
BstSNI	TACGTA	1 cut(s)	503
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	313, 618
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	195
BtgI	CCRYGG	3 cut(s)	204, 432, 441
BtsCI	GGATG	2 cut(s)	376, 451
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	189, 193
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	191
CspCI	CAANNNNNGTGG	2 cut(s)	527, 562
CviAII	CATG	6 cut(s)	165, 205, 337, 433, 442, 584
CviJI	RGCY	9 cut(s)	28, 187, 195, 259, 412, 482, 496, 507, 609
CviKI_1	RGCY	9 cut(s)	28, 187, 195, 259, 412, 482, 496, 507, 609
DdeI	CTNAG	4 cut(s)	79, 236, 318, 486
DpnI	GATC	3 cut(s)	120, 247, 408
DpnII	GATC	3 cut(s)	118, 245, 406
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco105I	TACGTA	1 cut(s)	503
Eco130I	CCWWGG	4 cut(s)	204, 432, 441, 615
Eco32I	GATATC	1 cut(s)	552
Eco91I	GGTNACC	1 cut(s)	386
EcoO65I	GGTNACC	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	552
EcoT14I	CCWWGG	4 cut(s)	204, 432, 441, 615
ErhI	CCWWGG	4 cut(s)	204, 432, 441, 615
FaeI	CATG	6 cut(s)	168, 208, 340, 436, 445, 587
FatI	CATG	6 cut(s)	164, 204, 336, 432, 441, 583
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	327, 607
FokI	GGATG	2 cut(s)	383, 458
Fsp4HI	GCNGC	2 cut(s)	327, 607
FspBI	CTAG	4 cut(s)	66, 303, 563, 594
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	2 cut(s)	327, 607
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	6 cut(s)	168, 208, 340, 436, 445, 587
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	1 cut(s)	192
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	88, 416
HpyAV	CCTTC	3 cut(s)	147, 228, 408
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	7 cut(s)	314, 329, 344, 355, 455, 532, 538
HpyF3I	CTNAG	4 cut(s)	79, 236, 318, 486
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	6 cut(s)	168, 208, 340, 436, 445, 587
HspAI	GCGC	1 cut(s)	21
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	118, 245, 406
LpnPI	CCDG	6 cut(s)	30, 57, 205, 318, 429, 607
Lsp1109I	GCAGC	2 cut(s)	313, 618
LweI	GCATC	3 cut(s)	323, 342, 361
MaeI	CTAG	4 cut(s)	66, 303, 563, 594
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	2 cut(s)	386, 633
MalI	GATC	3 cut(s)	120, 247, 408
MboI	GATC	3 cut(s)	118, 245, 406
MboII	GAAGA	4 cut(s)	141, 167, 170, 304
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	245
MluCI	AATT	8 cut(s)	69, 93, 109, 309, 402, 427, 539, 626
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	9 cut(s)	99, 138, 141, 144, 206, 225, 232, 245, 401
MroNI	GCCGGC	1 cut(s)	191
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	45
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	117
NaeI	GCCGGC	1 cut(s)	193
NcoI	CCATGG	3 cut(s)	204, 432, 441
NdeII	GATC	3 cut(s)	118, 245, 406
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	6 cut(s)	168, 208, 340, 436, 445, 587
NspI	RCATGY	2 cut(s)	340, 587
PciI	ACATGT	1 cut(s)	583
PdiI	GCCGGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	621
PkrI	GCNGC	2 cut(s)	328, 608
Ppu21I	YACGTR	1 cut(s)	503
PscI	ACATGT	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	43
PspEI	GGTNACC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	2 cut(s)	327, 607
Sau3AI	GATC	3 cut(s)	118, 245, 406
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	6 cut(s)	393, 400, 414, 505, 599, 611
SfaNI	GCATC	3 cut(s)	323, 342, 361
SmiMI	CAYNNNNRTG	1 cut(s)	203
SnaBI	TACGTA	1 cut(s)	503
SpeI	ACTAGT	1 cut(s)	562
Sse9I	AATT	8 cut(s)	69, 93, 109, 309, 402, 427, 539, 626
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	4 cut(s)	66, 303, 563, 594
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	4 cut(s)	204, 432, 441, 615
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	51
TasI	AATT	8 cut(s)	69, 93, 109, 309, 402, 427, 539, 626
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	2 cut(s)	326, 606
TspDTI	ATGAA	2 cut(s)	170, 589
TspRI	CASTG	1 cut(s)	108
Van91I	CCANNNNNTGG	1 cut(s)	621
XapI	RAATTY	3 cut(s)	69, 109, 626
XceI	RCATGY	2 cut(s)	340, 587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XspI	CTAG	4 cut(s)	66, 303, 563, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.