Rmu_sc0014237.1_g000005

Domain of unknown function (DUF4539)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014237.1
OG0006732
Physical Location & Seq
Reverse (-)
31780 .. 34089
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014237.1_g000005.1.cds

Sequence Viewer

Length: 1122 bp
atggaaccctgggaagaagctctcgacgtagacgacgacgtttcggagctcccctctttctctcttcgcccttgcaaccactcttcctctccttccctaaacccccaacccaaaccctcctcttcatctccggccctcattccgggccccgccggcgccgttcaggccgcgatgcaccgccgctcccagacctcctcctccgacgagccgattccgacgcaggagttcataaggagagtcttcgagaacggcgacgaggaagacgacgatttcgcctccgattcttggctccgcgctctcgattcagaaggcggtggcggccctcggacccctttgggctcgatcaagaaggggcttggcactcacagagtagctaaggttgttgctatgatcaaatcttgcaccccaaatggtcttggtgatctcatgttgactttgaaggatcctacaggtacaattggtgctaccatccaccgcaaagccctttctgagggagagtttggcaagagcgtttctgtgggtgcggttttggttctgcagaaggtcatttccaaggatagtgggcctcttgccacaaaagattttccaattttgtcagttaatactcctgctctcatcagtgcagaaagtagtaaaatgctacggacgccacaagaaaaactcctcctgtcagaggaaagtactcagcgaatcatgaaatgtctgagacaaaattccaaggtgattgggagtgaaaatattgagaagcatatggaaactggccacgcggcaccaggaaggattttctctgctcatgtgcactctggaagccaatttgctgctgtagagatagagccttcattggtggaaaaggctatacctaatggaatcactaaaatgtctgctagagaggacattattgatacagaacaagtaactggggttgctgaggagctcagaatggctgaagaggacaattcatcaagcatcatccaacccataagtggtttagcaaactcgactgagattcctgataatcatgggagaataacaggagcaaaaaggccaaggcagccactgagcttaacaactgcgctcccagactatacagaagaacaactaaatctgtttgactttgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4539

Protein Analysis

373

Amino Acids

40.09

Weight (kDa)

5.08

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 155, 769
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 30
AccII CGCG 3 cut(s) 170, 294, 767
AclWI GGATC 2 cut(s) 437, 450
AcoI YGGCCR 1 cut(s) 760
AcsI RAATTY 1 cut(s) 712
AcuI CTGAAG 1 cut(s) 966
AcyI GRCGYC 2 cut(s) 156, 647
AfaI GTAC 2 cut(s) 454, 682
AfiI CCNNNNNNNGG 5 cut(s) 142, 285, 490, 673, 983
AgsI TTSAA 1 cut(s) 439
AjnI CCWGG 2 cut(s) 8, 772
AluBI AGCT 5 cut(s) 20, 49, 374, 934, 1062
AluI AGCT 5 cut(s) 20, 49, 374, 934, 1062
Alw21I GWGCWC 3 cut(s) 51, 801, 936
Alw26I GTCTC 1 cut(s) 700
Alw44I GTGCAC 1 cut(s) 797
AlwI GGATC 2 cut(s) 437, 450
AlwNI CAGNNNCTG 1 cut(s) 1057
AoxI GGCC 7 cut(s) 132, 145, 165, 319, 563, 760, 1043
ApaI GGGCCC 1 cut(s) 149
ApaLI GTGCAC 1 cut(s) 797
ApeKI GCWGC 2 cut(s) 818, 1051
ApoI RAATTY 1 cut(s) 712
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspLEI GCGC 3 cut(s) 158, 296, 1075
AspS9I GGNCC 6 cut(s) 133, 145, 146, 320, 327, 563
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 431, 733
AvaII GGWCC 1 cut(s) 327
BaeGI GKGCMC 2 cut(s) 149, 801
BalI TGGCCA 1 cut(s) 762
BamHI GGATCC 1 cut(s) 442
BanI GGYRCC 2 cut(s) 155, 769
BanII GRGCYC 4 cut(s) 51, 149, 341, 936
BbsI GAAGAC 2 cut(s) 232, 267
Bbv12I GWGCWC 3 cut(s) 51, 801, 936
BbvCI CCTCAGC 1 cut(s) 927
BbvI GCAGC 2 cut(s) 805, 1063
BccI CCATC 1 cut(s) 476
BceAI ACGGC 2 cut(s) 143, 265
BciT130I CCWGG 2 cut(s) 10, 774
BclI TGATCA 1 cut(s) 390
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 700
BfaI CTAG 1 cut(s) 885
BfmI CTRYAG 3 cut(s) 447, 536, 822
BfoI RGCGCY 1 cut(s) 159
BglI GCCNNNNNGGC 2 cut(s) 153, 164
BisI GCNGC 6 cut(s) 168, 181, 319, 768, 819, 1052
BlsI GCNGC 6 cut(s) 169, 182, 320, 769, 820, 1053
BmcAI AGTACT 1 cut(s) 682
Bme1390I CCNGG 3 cut(s) 10, 144, 774
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 6 cut(s) 133, 145, 146, 320, 327, 563
BmiI GGNNCC 8 cut(s) 6, 147, 148, 157, 290, 329, 444, 771
BmrFI CCNGG 3 cut(s) 10, 144, 774
BmrI ACTGGG 1 cut(s) 927
BmsI GCATC 2 cut(s) 162, 975
BmuI ACTGGG 1 cut(s) 927
BpiI GAAGAC 2 cut(s) 232, 267
BplI GAGNNNNNCTC 2 cut(s) 38, 70
Bpu10I CCTNAGC 2 cut(s) 375, 927
BpuMI CCSGG 1 cut(s) 144
BsaHI GRCGYC 2 cut(s) 156, 647
BsaJI CCNNGG 6 cut(s) 8, 9, 323, 552, 717, 1046
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 285, 490, 673, 983
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 763, 922
BseBI CCWGG 2 cut(s) 10, 774
BseDI CCNNGG 6 cut(s) 8, 9, 323, 552, 717, 1046
BseGI GGATG 2 cut(s) 468, 969
BseLI CCNNNNNNNGG 5 cut(s) 142, 285, 490, 673, 983
BseMII CTCAG 7 cut(s) 480, 695, 698, 918, 949, 993, 1049
BseNI ACTGG 2 cut(s) 763, 922
BseRI GAGGAG 5 cut(s) 109, 184, 187, 653, 944
BseSI GKGCMC 2 cut(s) 149, 801
BseXI GCAGC 2 cut(s) 805, 1063
BsgI GTGCAG 1 cut(s) 642
Bsh1236I CGCG 3 cut(s) 170, 294, 767
BshFI GGCC 7 cut(s) 134, 147, 167, 321, 565, 762, 1045
BshNI GGYRCC 2 cut(s) 155, 769
BsiHKAI GWGCWC 3 cut(s) 51, 801, 936
BsiSI CCGG 3 cut(s) 131, 143, 153
BslI CCNNNNNNNGG 5 cut(s) 142, 285, 490, 673, 983
BsmAI GTCTC 1 cut(s) 700
BsnI GGCC 7 cut(s) 134, 147, 167, 321, 565, 762, 1045
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 5 cut(s) 51, 149, 341, 801, 936
Bsp143I GATC 4 cut(s) 342, 390, 421, 442
BspANI GGCC 7 cut(s) 134, 147, 167, 321, 565, 762, 1045
BspCNI CTCAG 7 cut(s) 481, 696, 697, 919, 948, 994, 1050
BspFNI CGCG 3 cut(s) 170, 294, 767
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 8 cut(s) 6, 147, 148, 157, 290, 329, 444, 771
BspMAI CTGCAG 1 cut(s) 540
BspPI GGATC 2 cut(s) 437, 450
BspT107I GGYRCC 2 cut(s) 155, 769
BsrBI CCGCTC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 2 cut(s) 763, 922
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 6 cut(s) 8, 9, 323, 552, 717, 1046
BssMI GATC 4 cut(s) 342, 390, 421, 442
BssNI GRCGYC 2 cut(s) 156, 647
BssT1I CCWWGG 3 cut(s) 552, 717, 1046
Bst2UI CCWGG 2 cut(s) 10, 774
Bst6I CTCTTC 4 cut(s) 69, 88, 127, 942
BstACI GRCGYC 2 cut(s) 156, 647
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 8 cut(s) 375, 489, 684, 704, 927, 935, 1002, 1058
BstENI CCTNNNNNAGG 2 cut(s) 488, 671
BstF5I GGATG 2 cut(s) 468, 969
BstFNI CGCG 3 cut(s) 170, 294, 767
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 3 cut(s) 158, 296, 1075
BstKTI GATC 4 cut(s) 345, 393, 424, 445
BstMAI GTCTC 1 cut(s) 700
BstMBI GATC 4 cut(s) 342, 390, 421, 442
BstMWI GCNNNNNNNGC 5 cut(s) 153, 164, 318, 646, 1051
BstNI CCWGG 2 cut(s) 10, 774
BstSCI CCNGG 3 cut(s) 8, 142, 772
BstSFI CTRYAG 3 cut(s) 447, 536, 822
BstSLI GKGCMC 2 cut(s) 149, 801
BstUI CGCG 3 cut(s) 170, 294, 767
BstV1I GCAGC 2 cut(s) 805, 1063
BstV2I GAAGAC 2 cut(s) 232, 267
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
BsuRI GGCC 7 cut(s) 134, 147, 167, 321, 565, 762, 1045
BtgZI GCGATG 1 cut(s) 185
BtsCI GGATG 2 cut(s) 468, 969
BtsIMutI CAGTG 2 cut(s) 625, 1055
Cac8I GCNNGC 1 cut(s) 154
CaiI CAGNNNCTG 1 cut(s) 1057
CciI TCATGA 1 cut(s) 693
CfoI GCGC 3 cut(s) 158, 296, 1075
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 6 cut(s) 133, 145, 146, 320, 327, 563
CseI GACGC 2 cut(s) 226, 655
Csp6I GTAC 2 cut(s) 453, 681
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CviAII CATG 4 cut(s) 427, 694, 794, 1019
CviQI GTAC 2 cut(s) 453, 681
DdeI CTNAG 8 cut(s) 375, 489, 684, 704, 927, 935, 1002, 1058
DinI GGCGCC 1 cut(s) 157
DpnI GATC 4 cut(s) 344, 392, 423, 444
DpnII GATC 4 cut(s) 342, 390, 421, 442
EaeI YGGCCR 1 cut(s) 760
Eam1104I CTCTTC 4 cut(s) 69, 88, 127, 942
EarI CTCTTC 4 cut(s) 69, 88, 127, 942
Ecl136II GAGCTC 2 cut(s) 49, 934
Eco130I CCWWGG 3 cut(s) 552, 717, 1046
Eco24I GRGCYC 4 cut(s) 51, 149, 341, 936
Eco47I GGWCC 1 cut(s) 327
Eco53kI GAGCTC 2 cut(s) 49, 934
Eco57I CTGAAG 1 cut(s) 966
EcoICRI GAGCTC 2 cut(s) 49, 934
EcoNI CCTNNNNNAGG 2 cut(s) 488, 671
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 8, 772
EcoT14I CCWWGG 3 cut(s) 552, 717, 1046
EcoT38I GRGCYC 4 cut(s) 51, 149, 341, 936
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
ErhI CCWWGG 3 cut(s) 552, 717, 1046
FaeI CATG 4 cut(s) 430, 697, 797, 1022
FatI CATG 4 cut(s) 426, 693, 793, 1018
FauI CCCGC 1 cut(s) 157
FauNDI CATATG 1 cut(s) 750
FbaI TGATCA 1 cut(s) 390
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 6 cut(s) 168, 181, 319, 768, 819, 1052
FokI GGATG 2 cut(s) 455, 956
FriOI GRGCYC 4 cut(s) 51, 149, 341, 936
Fsp4HI GCNGC 6 cut(s) 168, 181, 319, 768, 819, 1052
FspBI CTAG 1 cut(s) 885
GlaI GCGC 3 cut(s) 157, 295, 1074
GluI GCNGC 6 cut(s) 168, 181, 319, 768, 819, 1052
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 7 cut(s) 134, 147, 167, 321, 565, 762, 1045
HapII CCGG 3 cut(s) 131, 143, 153
HgaI GACGC 2 cut(s) 226, 655
HhaI GCGC 3 cut(s) 158, 296, 1075
Hin1I GRCGYC 2 cut(s) 156, 647
Hin1II CATG 4 cut(s) 430, 697, 797, 1022
Hin6I GCGC 3 cut(s) 156, 294, 1073
HinP1I GCGC 3 cut(s) 156, 294, 1073
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 7 cut(s) 211, 237, 281, 302, 690, 867, 1006
HpaII CCGG 3 cut(s) 131, 143, 153
HphI GGTGA 2 cut(s) 431, 733
Hpy166II GTNNAC 3 cut(s) 31, 432, 799
Hpy188III TCNNGA 7 cut(s) 23, 244, 299, 346, 694, 804, 1010
Hpy8I GTNNAC 3 cut(s) 31, 432, 799
Hpy99I CGWCG 7 cut(s) 29, 38, 41, 206, 220, 257, 269
HpyAV CCTTC 7 cut(s) 102, 302, 343, 433, 535, 771, 846
HpyCH4IV ACGT 2 cut(s) 27, 39
HpyCH4V TGCA 6 cut(s) 75, 175, 402, 538, 623, 799
HpyF10VI GCNNNNNNNGC 5 cut(s) 153, 164, 318, 646, 1051
HpyF3I CTNAG 8 cut(s) 375, 489, 684, 704, 927, 935, 1002, 1058
HpySE526I ACGT 2 cut(s) 27, 39
Hsp92I GRCGYC 2 cut(s) 156, 647
Hsp92II CATG 4 cut(s) 430, 697, 797, 1022
HspAI GCGC 3 cut(s) 156, 294, 1073
KasI GGCGCC 1 cut(s) 155
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 4 cut(s) 342, 390, 421, 442
LmnI GCTCC 7 cut(s) 46, 54, 188, 294, 931, 1034, 1080
Lsp1109I GCAGC 2 cut(s) 805, 1063
LweI GCATC 2 cut(s) 162, 975
MaeI CTAG 1 cut(s) 885
MaeII ACGT 2 cut(s) 27, 39
MaeIII GTNAC 1 cut(s) 913
MalI GATC 4 cut(s) 344, 392, 423, 444
MbiI CCGCTC 1 cut(s) 183
MboI GATC 4 cut(s) 342, 390, 421, 442
MboII GAAGA 8 cut(s) 26, 56, 75, 114, 232, 272, 959, 1103
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 1 cut(s) 442
MhlI GDGCHC 5 cut(s) 51, 149, 341, 801, 936
MlsI TGGCCA 1 cut(s) 762
MluCI AATT 5 cut(s) 456, 588, 712, 812, 955
MluNI TGGCCA 1 cut(s) 762
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 3 cut(s) 225, 239, 997
Mox20I TGGCCA 1 cut(s) 762
MreI CGCCGGCG 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 152
MscI TGGCCA 1 cut(s) 762
MseI TTAA 2 cut(s) 600, 1064
MslI CAYNNNNRTG 1 cut(s) 875
Msp20I TGGCCA 1 cut(s) 762
MspI CCGG 3 cut(s) 131, 143, 153
MspR9I CCNGG 3 cut(s) 10, 144, 774
MunI CAATTG 1 cut(s) 456
MvaI CCWGG 2 cut(s) 10, 774
MvnI CGCG 3 cut(s) 170, 294, 767
MwoI GCNNNNNNNGC 5 cut(s) 153, 164, 318, 646, 1051
NaeI GCCGGC 1 cut(s) 154
NarI GGCGCC 1 cut(s) 156
NciI CCSGG 1 cut(s) 144
NdeI CATATG 1 cut(s) 750
NdeII GATC 4 cut(s) 342, 390, 421, 442
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 4 cut(s) 430, 697, 797, 1022
NlaIV GGNNCC 8 cut(s) 6, 147, 148, 157, 290, 329, 444, 771
PagI TCATGA 1 cut(s) 693
PasI CCCWGGG 1 cut(s) 9
PcsI WCGNNNNNNNCGW 4 cut(s) 30, 33, 249, 261
PdiI GCCGGC 1 cut(s) 154
PfeI GAWTC 6 cut(s) 211, 281, 302, 690, 867, 1006
PkrI GCNGC 6 cut(s) 169, 182, 320, 769, 820, 1053
PleI GAGTC 1 cut(s) 245
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 245
Psp124BI GAGCTC 2 cut(s) 51, 936
Psp6I CCWGG 2 cut(s) 8, 772
PspGI CCWGG 2 cut(s) 8, 772
PspN4I GGNNCC 8 cut(s) 6, 147, 148, 157, 290, 329, 444, 771
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 6 cut(s) 133, 145, 146, 320, 327, 563
PstI CTGCAG 1 cut(s) 540
PstNI CAGNNNCTG 1 cut(s) 1057
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 2 cut(s) 454, 682
RsaNI GTAC 2 cut(s) 453, 681
RseI CAYNNNNRTG 1 cut(s) 875
SacI GAGCTC 2 cut(s) 51, 936
SaqAI TTAA 2 cut(s) 600, 1064
SatI GCNGC 6 cut(s) 168, 181, 319, 768, 819, 1052
Sau3AI GATC 4 cut(s) 342, 390, 421, 442
Sau96I GGNCC 6 cut(s) 133, 145, 146, 320, 327, 563
ScaI AGTACT 1 cut(s) 682
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 3 cut(s) 10, 144, 774
SduI GDGCHC 5 cut(s) 51, 149, 341, 801, 936
SfaNI GCATC 2 cut(s) 162, 975
SfcI CTRYAG 3 cut(s) 447, 536, 822
SfoI GGCGCC 1 cut(s) 157
SgrAI CRCCGGYG 1 cut(s) 152
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 875
Sse9I AATT 5 cut(s) 456, 588, 712, 812, 955
SspDI GGCGCC 1 cut(s) 155
SspI AATATT 1 cut(s) 739
SspMI CTAG 1 cut(s) 885
SstI GAGCTC 2 cut(s) 51, 936
StyD4I CCNGG 3 cut(s) 8, 142, 772
StyI CCWWGG 3 cut(s) 552, 717, 1046
TaiI ACGT 2 cut(s) 30, 42
TaqI TCGA 5 cut(s) 24, 243, 300, 341, 998
TasI AATT 5 cut(s) 456, 588, 712, 812, 955
TatI WGTACW 1 cut(s) 680
TauI GCSGC 4 cut(s) 170, 183, 321, 770
TfiI GAWTC 6 cut(s) 211, 281, 302, 690, 867, 1006
Tru1I TTAA 2 cut(s) 600, 1064
Tru9I TTAA 2 cut(s) 600, 1064
TscAI CASTG 2 cut(s) 625, 1062
TseI GCWGC 2 cut(s) 818, 1051
TspDTI ATGAA 5 cut(s) 114, 217, 710, 828, 948
TspGWI ACGGA 1 cut(s) 658
TspRI CASTG 2 cut(s) 625, 1062
VneI GTGCAC 1 cut(s) 797
VpaK11BI GGWCC 1 cut(s) 327
XagI CCTNNNNNAGG 2 cut(s) 488, 671
XapI RAATTY 1 cut(s) 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 980
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 885
ZrmI AGTACT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.