Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006732

Physical Location & Seq

Genomic Coordinates Reverse (-)

55590849 .. 55593213

Gene Structure 2365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0416800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGGTTGGGATCAGAGTCCGAAGCCGTTTGTGTGACAGGCACCTCCGGTATCGTCGGCTCATGGCTCGTCATGAGACTTCTAGAGCGCAGCTGCACTGTCCGAGCTACCGCGGACCTGGATGTGGAGGGAAGCTTTGATGAAGCTATTAAGGGCTGTGTCGGAGTGTTTCATGTCGCCACGCCTATGGATTTCGAGTCTGAGGAAACAGAGAATGAAGTGATAAAGCCAATAATAAATGGGATGTTAGACATCATGAAAACATGTCTCAAAGCAAAGACTGTTCGGAGGATGTTATTTACATCGTCGGCCGGAACTGTCGTTGTTGAAGAACAGAGTAAGGCAATTTACGACGAAAACAACTGGAGCGATGTTGATTTTTGCCGGAAAGTAAAGATGACTGGTTGGGTGCGTTCGAGCGAGGGCATTGAGGAGAAGTTGACAAGTATCCATTTTTCTTCAAAAAAGCTGAAAGAGATAGGGTTTGAGTTCAAATACAGCTTGGAGGACATGTTTATAGGGGCTGTTGATGCTGTAGAGAAAAGGGTCTGCTTAGGAAGAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4539

Protein Analysis

189

Amino Acids

20.97

Weight (kDa)

5.13

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	10 - 106	6e-07	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	38 - 120	1.2e-07	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48580 AT1G48580 AT1G48580
fragaria_vesca	FvH4_5g17330
malus_domestica	MD06G1227000.v1.1
prunus_persica	Prupe.5G233500_v2.0.a1
pyrus_communis	pycom06g20330
rosa_chinensis	RchiOBHm_Chr7g0178441
rosa_laevigata	RLG00000005448
rosa_multiflora	Rmu_co8204114.1_g000001 Rmu_sc0014237.1_g000005 Rmu_sc0014842.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274920 Rroxscaffold_3G00274950
rosa_rugosa	Rorug06G0416800 Rorug06G0417000
rosa_samantha	Rh5BG525600 Rh5CG549200 Rh5DG537600 Rh7AG015500 Rh7BG015000 Rh7CG015700 Rh7CG015800 Rh7DG015400
rosa_wichuraiana	Rw0G010170 Rw7G001220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	111, 113
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflIII	ACRYGT	2 cut(s)	263, 510
AgsI	TTSAA	3 cut(s)	329, 462, 493
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	7 cut(s)	93, 107, 135, 146, 469, 501, 567
AluI	AGCT	7 cut(s)	93, 107, 135, 146, 469, 501, 567
Alw26I	GTCTC	2 cut(s)	70, 272
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	90, 93
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	80, 102
BceAI	ACGGC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	458
BcoDI	GTCTC	2 cut(s)	70, 272
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	534
BfuI	GTATCC	1 cut(s)	458
BisI	GCNGC	2 cut(s)	91, 94
BlsI	GCNGC	2 cut(s)	92, 95
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	520
BpmI	CTGGAG	1 cut(s)	385
Bpu10I	CCTNAGC	1 cut(s)	553
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	368, 406
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	3 cut(s)	127, 249, 297
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	368, 406
BseRI	GAGGAG	1 cut(s)	446
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	80, 102
BsgI	GTGCAG	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	312
BsiSI	CCGG	3 cut(s)	48, 312, 385
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	70, 272
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	2 cut(s)	111, 113
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	2 cut(s)	72, 255
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	368, 406
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	100, 283, 319
BstDEI	CTNAG	2 cut(s)	201, 553
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	3 cut(s)	127, 249, 297
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	2 cut(s)	70, 272
BstMBI	GATC	1 cut(s)	11
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	2 cut(s)	267, 514
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	534
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	80, 102
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstZI	CGGCCG	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	3 cut(s)	127, 249, 297
BtsIMutI	CAGTG	1 cut(s)	96
CciI	TCATGA	2 cut(s)	72, 255
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	115
Cfr42I	CCGCGG	1 cut(s)	114
CviAII	CATG	6 cut(s)	63, 73, 173, 256, 264, 511
DdeI	CTNAG	2 cut(s)	201, 553
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	309
EagI	CGGCCG	1 cut(s)	309
EclXI	CGGCCG	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	117
FaeI	CATG	6 cut(s)	66, 76, 176, 259, 267, 514
FaiI	YATR	8 cut(s)	64, 74, 174, 188, 257, 265, 512, 518
FatI	CATG	6 cut(s)	62, 72, 172, 255, 263, 510
Fnu4HI	GCNGC	2 cut(s)	91, 94
FokI	GGATG	3 cut(s)	134, 256, 304
Fsp4HI	GCNGC	2 cut(s)	91, 94
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	91, 94
GsuI	CTGGAG	1 cut(s)	385
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	3 cut(s)	48, 312, 385
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	6 cut(s)	66, 76, 176, 259, 267, 514
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	2 cut(s)	17, 197
HpaII	CCGG	3 cut(s)	48, 312, 385
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	6 cut(s)	16, 22, 104, 164, 202, 288
Hpy188III	TCNNGA	3 cut(s)	73, 83, 256
Hpy8I	GTNNAC	1 cut(s)	441
Hpy99I	CGWCG	3 cut(s)	59, 310, 356
HpyCH4III	ACNGT	3 cut(s)	100, 283, 319
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	2 cut(s)	201, 553
Hsp92II	CATG	6 cut(s)	66, 76, 176, 259, 267, 514
HspAI	GCGC	1 cut(s)	88
KspI	CCGCGG	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	8 cut(s)	24, 61, 104, 131, 325, 349, 387, 398
Lsp1109I	GCAGC	2 cut(s)	80, 102
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	3 cut(s)	341, 450, 570
MluCI	AATT	1 cut(s)	345
MlyI	GAGTC	2 cut(s)	26, 206
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	7 cut(s)	55, 121, 196, 282, 415, 424, 499
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	2 cut(s)	93, 113
MspI	CCGG	3 cut(s)	48, 312, 385
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	530
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	6 cut(s)	66, 76, 176, 259, 267, 514
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	2 cut(s)	267, 514
PagI	TCATGA	2 cut(s)	72, 255
PciI	ACATGT	2 cut(s)	263, 510
PkrI	GCNGC	2 cut(s)	92, 95
PleI	GAGTC	2 cut(s)	25, 205
PpsI	GAGTC	2 cut(s)	25, 205
PscI	ACATGT	2 cut(s)	263, 510
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	185
SacII	CCGCGG	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	2 cut(s)	91, 94
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	26, 206
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	9 cut(s)	47, 95, 109, 120, 137, 148, 471, 503, 569
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	1 cut(s)	534
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	2 cut(s)	111, 113
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	3 cut(s)	100, 283, 319
TaqI	TCGA	2 cut(s)	195, 416
TasI	AATT	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	90, 93
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	156, 161, 231, 272
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	2 cut(s)	267, 514
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.