Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8204114.1

Orthogroup ID

OG0006732

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 673

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8204114.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggaaccctgggaagaagctctcgacgtagacgacgacgtttcggagctcccctctttctctcttcgcccttgcaaccactcttcctctccttccctaaacccccaacccaaaccctcctcttcatctccggccctcattccgggccccgccggcgccgttcaggccgcgatgcaccgccgctcccagacctcctcctccgacgagccgattccgacgcaggagttcataaggagagtcttcgagaacggcgacgaggaagacgacgatttcgcctccgattcttggctccgcgctctcgattcagaaggcggtggcggccctcggacccctttgggctcgatcaagaaggggcttggcactcacagagtagctaaggtagttctattacgtcgtcgttttggtgtcaattggaaattttgtgatctcagatttggggttgttgctatgatcaaatcttgcaccccaaatggtcttggtgatctcatgttgactttgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4539

Protein Analysis

167

Amino Acids

18.18

Weight (kDa)

5.38

Isoelectric Point (pI)

70.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48580 AT1G48580 AT1G48580
fragaria_vesca	FvH4_5g17330
malus_domestica	MD06G1227000.v1.1
prunus_persica	Prupe.5G233500_v2.0.a1
pyrus_communis	pycom06g20330
rosa_chinensis	RchiOBHm_Chr7g0178441
rosa_laevigata	RLG00000005448
rosa_multiflora	Rmu_co8204114.1_g000001 Rmu_sc0014237.1_g000005 Rmu_sc0014842.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274920 Rroxscaffold_3G00274950
rosa_rugosa	Rorug06G0416800 Rorug06G0417000
rosa_samantha	Rh5BG525600 Rh5CG549200 Rh5DG537600 Rh7AG015500 Rh7BG015000 Rh7CG015700 Rh7CG015800 Rh7DG015400
rosa_wichuraiana	Rw0G010170 Rw7G001220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	2 cut(s)	170, 294
AciI	CCGC	7 cut(s)	150, 168, 178, 181, 292, 312, 318
AcsI	RAATTY	1 cut(s)	416
AcyI	GRCGYC	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	142, 285
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	3 cut(s)	20, 49, 374
AluI	AGCT	3 cut(s)	20, 49, 374
Alw21I	GWGCWC	1 cut(s)	51
AoxI	GGCC	4 cut(s)	132, 145, 165, 319
ApaI	GGGCCC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	416
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspLEI	GCGC	2 cut(s)	158, 296
AspS9I	GGNCC	5 cut(s)	133, 145, 146, 320, 327
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	3 cut(s)	51, 149, 341
BbsI	GAAGAC	2 cut(s)	232, 267
Bbv12I	GWGCWC	1 cut(s)	51
BceAI	ACGGC	2 cut(s)	143, 265
BciT130I	CCWGG	1 cut(s)	10
BclI	TGATCA	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	159
BglI	GCCNNNNNGGC	2 cut(s)	153, 164
BisI	GCNGC	3 cut(s)	168, 181, 319
BlsI	GCNGC	3 cut(s)	169, 182, 320
Bme1390I	CCNGG	2 cut(s)	10, 144
Bme18I	GGWCC	1 cut(s)	327
BmgT120I	GGNCC	5 cut(s)	133, 145, 146, 320, 327
BmiI	GGNNCC	6 cut(s)	6, 147, 148, 157, 290, 329
BmrFI	CCNGG	2 cut(s)	10, 144
BmsI	GCATC	1 cut(s)	162
BpiI	GAAGAC	2 cut(s)	232, 267
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
Bpu10I	CCTNAGC	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	8, 9, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 285
Bse118I	RCCGGY	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	3 cut(s)	8, 9, 323
BseLI	CCNNNNNNNGG	2 cut(s)	142, 285
BseMII	CTCAG	1 cut(s)	442
BseRI	GAGGAG	3 cut(s)	109, 184, 187
BseSI	GKGCMC	1 cut(s)	149
Bsh1236I	CGCG	2 cut(s)	170, 294
BshFI	GGCC	4 cut(s)	134, 147, 167, 321
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	3 cut(s)	131, 143, 153
BslI	CCNNNNNNNGG	2 cut(s)	142, 285
BsnI	GGCC	4 cut(s)	134, 147, 167, 321
Bsp120I	GGGCCC	1 cut(s)	145
Bsp1286I	GDGCHC	3 cut(s)	51, 149, 341
Bsp143I	GATC	4 cut(s)	342, 424, 450, 481
BspACI	CCGC	7 cut(s)	150, 168, 178, 181, 292, 312, 318
BspANI	GGCC	4 cut(s)	134, 147, 167, 321
BspCNI	CTCAG	1 cut(s)	441
BspFNI	CGCG	2 cut(s)	170, 294
BspLI	GGNNCC	6 cut(s)	6, 147, 148, 157, 290, 329
BspT107I	GGYRCC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	8, 9, 323
BssMI	GATC	4 cut(s)	342, 424, 450, 481
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	10
Bst6I	CTCTTC	3 cut(s)	69, 88, 127
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	375, 428
BstFNI	CGCG	2 cut(s)	170, 294
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	2 cut(s)	158, 296
BstKTI	GATC	4 cut(s)	345, 427, 453, 484
BstMBI	GATC	4 cut(s)	342, 424, 450, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 164, 318
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	8, 142
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	2 cut(s)	170, 294
BstV2I	GAAGAC	2 cut(s)	232, 267
BsuRI	GGCC	4 cut(s)	134, 147, 167, 321
BtgZI	GCGATG	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	154
CfoI	GCGC	2 cut(s)	158, 296
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	5 cut(s)	133, 145, 146, 320, 327
CseI	GACGC	1 cut(s)	226
CviAII	CATG	1 cut(s)	487
DdeI	CTNAG	2 cut(s)	375, 428
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	4 cut(s)	344, 426, 452, 483
DpnII	GATC	4 cut(s)	342, 424, 450, 481
Eam1104I	CTCTTC	3 cut(s)	69, 88, 127
EarI	CTCTTC	3 cut(s)	69, 88, 127
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	3 cut(s)	51, 149, 341
Eco47I	GGWCC	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	8
EcoT38I	GRGCYC	3 cut(s)	51, 149, 341
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
FaeI	CATG	1 cut(s)	490
FaiI	YATR	3 cut(s)	230, 449, 488
FatI	CATG	1 cut(s)	486
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	450
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	168, 181, 319
FriOI	GRGCYC	3 cut(s)	51, 149, 341
Fsp4HI	GCNGC	3 cut(s)	168, 181, 319
GlaI	GCGC	2 cut(s)	157, 295
GluI	GCNGC	3 cut(s)	168, 181, 319
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	4 cut(s)	134, 147, 167, 321
HapII	CCGG	3 cut(s)	131, 143, 153
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	2 cut(s)	158, 296
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	490
Hin6I	GCGC	2 cut(s)	156, 294
HinP1I	GCGC	2 cut(s)	156, 294
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	4 cut(s)	211, 237, 281, 302
HpaII	CCGG	3 cut(s)	131, 143, 153
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	31, 492
Hpy188I	TCNGA	7 cut(s)	46, 202, 216, 280, 307, 327, 431
Hpy188III	TCNNGA	4 cut(s)	23, 244, 299, 346
Hpy8I	GTNNAC	2 cut(s)	31, 492
Hpy99I	CGWCG	9 cut(s)	29, 38, 41, 206, 220, 257, 269, 396, 399
HpyAV	CCTTC	3 cut(s)	102, 302, 343
HpyCH4IV	ACGT	3 cut(s)	27, 39, 391
HpyCH4V	TGCA	3 cut(s)	75, 175, 462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 164, 318
HpyF3I	CTNAG	2 cut(s)	375, 428
HpySE526I	ACGT	3 cut(s)	27, 39, 391
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	490
HspAI	GCGC	2 cut(s)	156, 294
KasI	GGCGCC	1 cut(s)	155
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	4 cut(s)	342, 424, 450, 481
LmnI	GCTCC	4 cut(s)	46, 54, 188, 294
LpnPI	CCDG	7 cut(s)	22, 144, 149, 156, 166, 200, 206
LweI	GCATC	1 cut(s)	162
MaeII	ACGT	3 cut(s)	27, 39, 391
MalI	GATC	4 cut(s)	344, 426, 452, 483
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	4 cut(s)	342, 424, 450, 481
MboII	GAAGA	6 cut(s)	26, 56, 75, 114, 232, 272
MfeI	CAATTG	1 cut(s)	409
MhlI	GDGCHC	3 cut(s)	51, 149, 341
MluCI	AATT	2 cut(s)	409, 416
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	2 cut(s)	225, 239
MreI	CGCCGGCG	1 cut(s)	152
MroNI	GCCGGC	1 cut(s)	152
MspI	CCGG	3 cut(s)	131, 143, 153
MspR9I	CCNGG	2 cut(s)	10, 144
MunI	CAATTG	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	10
MvnI	CGCG	2 cut(s)	170, 294
MwoI	GCNNNNNNNGC	3 cut(s)	153, 164, 318
NaeI	GCCGGC	1 cut(s)	154
NarI	GGCGCC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	4 cut(s)	342, 424, 450, 481
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	490
NlaIV	GGNNCC	6 cut(s)	6, 147, 148, 157, 290, 329
PasI	CCCWGGG	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	4 cut(s)	30, 33, 249, 261
PdiI	GCCGGC	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	211, 281, 302
PkrI	GCNGC	3 cut(s)	169, 182, 320
PleI	GAGTC	1 cut(s)	245
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	6 cut(s)	6, 147, 148, 157, 290, 329
PspOMI	GGGCCC	1 cut(s)	145
PspPI	GGNCC	5 cut(s)	133, 145, 146, 320, 327
SacI	GAGCTC	1 cut(s)	51
SatI	GCNGC	3 cut(s)	168, 181, 319
Sau3AI	GATC	4 cut(s)	342, 424, 450, 481
Sau96I	GGNCC	5 cut(s)	133, 145, 146, 320, 327
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	2 cut(s)	10, 144
SduI	GDGCHC	3 cut(s)	51, 149, 341
SetI	ASST	8 cut(s)	22, 30, 42, 51, 194, 376, 381, 394
SfaNI	GCATC	1 cut(s)	162
SfoI	GGCGCC	1 cut(s)	157
SgrAI	CRCCGGYG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	327
Sse9I	AATT	2 cut(s)	409, 416
SsiI	CCGC	7 cut(s)	150, 168, 178, 181, 292, 312, 318
SspDI	GGCGCC	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	8, 142
TaiI	ACGT	3 cut(s)	30, 42, 394
TaqI	TCGA	4 cut(s)	24, 243, 300, 341
TasI	AATT	2 cut(s)	409, 416
TauI	GCSGC	3 cut(s)	170, 183, 321
TfiI	GAWTC	3 cut(s)	211, 281, 302
TspDTI	ATGAA	2 cut(s)	114, 217
VpaK11BI	GGWCC	1 cut(s)	327
XapI	RAATTY	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.