Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Forward (+)

4937016 .. 4937710

Gene Structure 695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCCCGCGGCAAAGAGAATTCACTCGCTCCTGGGTTCCGATTCCACCCAACCGATGAAGAACTAGTCTGGTACTATCTGAAGCGTAAGGTCTCCGGCAAGAACTTCCGATTTGACCCCATATCGGTCGTCGATATCTACAAGACCGAGCCTTGGGACCTCCCTGGCAAGTCGAAGCTGAAGACTAGGGACTTGGAGTGGTACTTTTTCAGTTTTCTGGATAAGAAGTATGGAAATTCGTCGAGGACGAATCGGGCTACTGAAAAAGGGTACTGGAAGACTACGGGTAAGGATCGCCCCATTAAACATAATTCCCGGGATGTTGGGATGAAGAAGACGCTGGTTTTCCATAGCGGGCGAGCCCCCACCGGTGCAAGAACCAATTGGGTTATGCATGAGTATCGCCTTTCCAACGAGGAATTGGAAAAAGCTGGAATTCAACAGGATCGATCCGTATGTGCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

156

Amino Acids

18.17

Weight (kDa)

9.78

Isoelectric Point (pI)

21.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 136	2.1e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AciI	CCGC	3 cut(s)	7, 9, 354
AclWI	GGATC	3 cut(s)	300, 444, 453
AcsI	RAATTY	3 cut(s)	19, 235, 435
AcuI	CTGAAG	2 cut(s)	101, 200
AfaI	GTAC	3 cut(s)	74, 203, 272
AfiI	CCNNNNNNNGG	2 cut(s)	124, 153
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	440
AhlI	ACTAGT	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	31, 163
AluBI	AGCT	2 cut(s)	178, 431
AluI	AGCT	2 cut(s)	178, 431
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	3 cut(s)	300, 444, 453
Ama87I	CYCGRG	1 cut(s)	315
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	3 cut(s)	19, 235, 435
AsiGI	ACCGGT	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	4, 157
AsuC2I	CCSGG	2 cut(s)	316, 317
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	364
BbsI	GAAGAC	3 cut(s)	188, 284, 341
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	2 cut(s)	33, 165
BcnI	CCSGG	2 cut(s)	316, 317
BcoDI	GTCTC	1 cut(s)	97
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	2 cut(s)	65, 186
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	4 cut(s)	33, 165, 316, 317
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	2 cut(s)	4, 157
BmiI	GGNNCC	2 cut(s)	38, 158
BmrFI	CCNGG	4 cut(s)	33, 165, 316, 317
BpiI	GAAGAC	3 cut(s)	188, 284, 341
BpuMI	CCSGG	2 cut(s)	316, 317
Bsa29I	ATCGAT	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	5 cut(s)	7, 32, 152, 163, 315
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 153
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	33, 165
BseCI	ATCGAT	1 cut(s)	448
BseDI	CCNNGG	5 cut(s)	7, 32, 152, 163, 315
BseGI	GGATG	2 cut(s)	325, 333
BseLI	CCNNNNNNNGG	2 cut(s)	124, 153
BseNI	ACTGG	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	448
BsiEI	CGRYCG	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	3 cut(s)	96, 316, 369
BslFI	GGGAC	2 cut(s)	170, 203
BslI	CCNNNNNNNGG	2 cut(s)	124, 153
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	2 cut(s)	170, 203
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	292, 445, 449
BspACI	CCGC	3 cut(s)	7, 9, 354
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	448
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	38, 158
BspPI	GGATC	3 cut(s)	300, 444, 453
BspTNI	GGTCTC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	5 cut(s)	7, 32, 152, 163, 315
BssMI	GATC	3 cut(s)	292, 445, 449
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	33, 165
BstC8I	GCNNGC	3 cut(s)	7, 356, 360
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	325, 333
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	3 cut(s)	295, 448, 452
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	3 cut(s)	292, 445, 449
BstMCI	CGRYCG	1 cut(s)	129
BstNI	CCWGG	2 cut(s)	33, 165
BstSCI	CCNGG	4 cut(s)	31, 163, 314, 315
BstUI	CGCG	1 cut(s)	9
BstV2I	GAAGAC	3 cut(s)	188, 284, 341
Bsu15I	ATCGAT	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	448
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	325, 333
Cac8I	GCNNGC	3 cut(s)	7, 356, 360
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	4, 157
Cfr42I	CCGCGG	1 cut(s)	10
Cfr9I	CCCGGG	1 cut(s)	315
ClaI	ATCGAT	1 cut(s)	448
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	3 cut(s)	73, 202, 271
CspAI	ACCGGT	1 cut(s)	368
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	6 cut(s)	5, 151, 178, 257, 362, 431
CviKI_1	RGCY	6 cut(s)	5, 151, 178, 257, 362, 431
CviQI	GTAC	3 cut(s)	73, 202, 271
DpnI	GATC	3 cut(s)	294, 447, 451
DpnII	GATC	3 cut(s)	292, 445, 449
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	101, 200
Eco88I	CYCGRG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRI	GAATTC	2 cut(s)	19, 435
EcoRII	CCWGG	2 cut(s)	31, 163
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	1 cut(s)	398
FaiI	YATR	7 cut(s)	122, 231, 309, 351, 392, 396, 457
FaqI	GGGAC	2 cut(s)	170, 203
FatI	CATG	1 cut(s)	394
FauI	CCCGC	2 cut(s)	14, 347
Fnu4HI	GCNGC	1 cut(s)	10
FokI	GGATG	2 cut(s)	332, 340
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	10
FspBI	CTAG	2 cut(s)	65, 186
GluI	GCNGC	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	96, 316, 369
HgaI	GACGC	1 cut(s)	346
Hin1II	CATG	1 cut(s)	398
HinfI	GANTC	2 cut(s)	42, 250
HpaII	CCGG	3 cut(s)	96, 316, 369
Hpy188I	TCNGA	3 cut(s)	41, 81, 110
Hpy188III	TCNNGA	1 cut(s)	218
Hpy99I	CGWCG	2 cut(s)	134, 244
HpyCH4V	TGCA	2 cut(s)	374, 394
Hsp92II	CATG	1 cut(s)	398
KspI	CCGCGG	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	292, 445, 449
LmnI	GCTCC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	65, 186
MalI	GATC	3 cut(s)	294, 447, 451
MboI	GATC	3 cut(s)	292, 445, 449
MboII	GAAGA	5 cut(s)	71, 193, 289, 343, 346
MfeI	CAATTG	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	6 cut(s)	19, 235, 310, 382, 419, 435
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	3 cut(s)	170, 237, 409
Mph1103I	ATGCAT	1 cut(s)	396
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	9
MspI	CCGG	3 cut(s)	96, 316, 369
MspR9I	CCNGG	4 cut(s)	33, 165, 316, 317
MunI	CAATTG	1 cut(s)	382
MvaI	CCWGG	2 cut(s)	33, 165
MvnI	CGCG	1 cut(s)	9
NciI	CCSGG	2 cut(s)	316, 317
NdeII	GATC	3 cut(s)	292, 445, 449
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	2 cut(s)	38, 158
NsiI	ATGCAT	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	42, 250
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	31, 163
PspGI	CCWGG	2 cut(s)	31, 163
PspN4I	GGNNCC	2 cut(s)	38, 158
PspPI	GGNCC	2 cut(s)	4, 157
PspPPI	RGGWCCY	1 cut(s)	157
RsaI	GTAC	3 cut(s)	74, 203, 272
RsaNI	GTAC	3 cut(s)	73, 202, 271
SacII	CCGCGG	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	3 cut(s)	292, 445, 449
Sau96I	GGNCC	2 cut(s)	4, 157
ScrFI	CCNGG	4 cut(s)	33, 165, 316, 317
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	4 cut(s)	93, 162, 180, 433
Sfr303I	CCGCGG	1 cut(s)	10
SgrAI	CRCCGGYG	1 cut(s)	368
SgrBI	CCGCGG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	157
SmaI	CCCGGG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	6 cut(s)	19, 235, 310, 382, 419, 435
SsiI	CCGC	3 cut(s)	7, 9, 354
SspMI	CTAG	2 cut(s)	65, 186
StyD4I	CCNGG	4 cut(s)	31, 163, 314, 315
StyI	CCWWGG	1 cut(s)	152
TaqI	TCGA	4 cut(s)	132, 173, 242, 448
TaqII	GACCGA	2 cut(s)	115, 161
TasI	AATT	6 cut(s)	19, 235, 310, 382, 419, 435
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	42, 250
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TspDTI	ATGAA	2 cut(s)	72, 344
TspGWI	ACGGA	1 cut(s)	442
TspMI	CCCGGG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	3 cut(s)	19, 235, 435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmaI	CCCGGG	1 cut(s)	315
XspI	CTAG	2 cut(s)	65, 186
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.