Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010964

Physical Location & Seq

Genomic Coordinates Reverse (-)

23781904 .. 23784354

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22440.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAAAACACATACATGTCACGCAGGCAGCAGCAGCAATCCAGCCCTCGACTTCTCAGAAGCAGAAGTGGAACTTCTTCGACCCCGACCCTAACCCTACCGCAAAACGTTTCACGTTCATGCACTACCACGCCAAACAACAGCCAAAGATTCATCAGCCCCCGGCGCTCGAAATCCACCGTAAAATCAAGAACCAATAAGAATCACGAGGAAGAGAAAGTACACGCACTCAAGCAAAAGAAAGGTGGCCAAGAAGATATCATTATTGGACAACAAGGTACTAATAATTTCGGTCTAAATACTAGTTTTGCTAAGTTGCAGCGAGGGAGTACTAGTCCTAGTCCAAGTCCACGCCGTAGAATATCAGTGTCCGTGCCGTCTCCGTCTGCATGGGCTTTGTCCCCAGGACGGTCTTTGCCGCGCAAGGTGACACCGGATCCCCCAGCGGCAGCGCCTTCGACAAGGGCAGCTAGGGTAAAGTCTAGTGGTGGCGGGGTTGGTGCGGTTTTAAAGTATTTTAGGCTGCAGAAGAAAGTGCCGCCGATACAAGAGGAGGACTTCCAACGGTTTCGGATTTTGCATAATAGGCTGCTGCAGTGGAGGTTTGCAAACGCCAGAGGTGAGGCTGCTAAGCTTGCTACACAGCAAATTTCACAGTTGCTTAATAAATTGTCTTTTATTTTTCTGGATAAATTGTTTAGCGTGTGGCTTAGAACATTGAAAGTGAGAAACTTCATCCTAGACAAAAGAATACAAGTGCAAAAGCTCAAGCATGAGATTAAGGTGTACCAGATTTTGAACCCACAAATTTTCCTACTGAATGAATGGGGAAAATTGGATAAAAAAAATCAAGAATCCATCAGCAGGTTGGTGAGAAAATTGTCAGGAATTTCAAACACAATCCCTTTGGTCAATGATGCTAAGGCAGATGTGGCATCTGTATACGAAGCCATGACCCCGGCCATGGCTGCGATGGAAGGTAATTTAGGAATGGTCTCTAAACTGCTGCCGCAGCTGGAAAAGGTGCTTTACATGGTTACGGAACTATTAATCGCACATAAACAACAGAGAGACCTGGATAGTAATTTAGCCTTGGTTTCTGCACTTGCGGAGGAGGAGGCAAGTGTAAGAGCACATCTCATCCAATTGGAATCAATGTACCTCTTGCCCCCCAACAAATTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

396

Amino Acids

44.41

Weight (kDa)

10.6

Isoelectric Point (pI)

60.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25190 AT4G25190
fragaria_vesca	FvH4_7g27280 FvH4_7g27280
malus_domestica	MD01G1181900.v1.1 MD07G1252100.v1.1
prunus_persica	Prupe.2G275600_v2.0.a1
pyrus_communis	pycom01g19170 pycom07g22440 pycom07g22450
rosa_chinensis	RchiOBHm_Chr1g0374111
rosa_laevigata	RLG00000026762
rosa_multiflora	Rmu_co8026676.1_g000001 Rmu_sc0022506.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283720
rosa_samantha	Rh1AG391600 Rh1BG355700 Rh1CG368600 Rh1DG386300
rosa_wichuraiana	Rw1G034400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1186
Acc36I	ACCTGC	1 cut(s)	855
AccI	GTMKAC	1 cut(s)	942
AccII	CGCG	1 cut(s)	421
AciI	CCGC	8 cut(s)	101, 419, 446, 492, 503, 539, 1010, 1109
AclI	AACGTT	1 cut(s)	108
AclWI	GGATC	2 cut(s)	431, 444
AcoI	YGGCCR	2 cut(s)	247, 960
AcsI	RAATTY	4 cut(s)	648, 807, 888, 1178
AfaI	GTAC	5 cut(s)	222, 280, 331, 788, 1160
AfiI	CCNNNNNNNGG	3 cut(s)	408, 864, 964
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	721, 799, 894
AhlI	ACTAGT	2 cut(s)	302, 332
AjnI	CCWGG	2 cut(s)	403, 1074
AluBI	AGCT	4 cut(s)	470, 634, 766, 1015
AluI	AGCT	4 cut(s)	470, 634, 766, 1015
Alw21I	GWGCWC	1 cut(s)	1135
Alw26I	GTCTC	3 cut(s)	384, 1000, 1065
AlwI	GGATC	2 cut(s)	431, 444
AoxI	GGCC	2 cut(s)	247, 960
ApoI	RAATTY	4 cut(s)	648, 807, 888, 1178
AseI	ATTAAT	1 cut(s)	1049
Asp700I	GAANNNNTTC	1 cut(s)	76
AspLEI	GCGC	3 cut(s)	168, 423, 454
AsuC2I	CCSGG	2 cut(s)	163, 959
AsuHPI	GGTGA	3 cut(s)	439, 632, 883
BalI	TGGCCA	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	436
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	1135
BccI	CCATC	2 cut(s)	866, 967
BceAI	ACGGC	2 cut(s)	339, 361
BcgI	CGANNNNNNTGC	2 cut(s)	438, 472
BciT130I	CCWGG	2 cut(s)	405, 1076
BcnI	CCSGG	2 cut(s)	163, 959
BcoDI	GTCTC	3 cut(s)	384, 1000, 1065
BcuI	ACTAGT	2 cut(s)	302, 332
BfaI	CTAG	6 cut(s)	303, 333, 339, 471, 483, 740
BfmI	CTRYAG	2 cut(s)	524, 593
BfoI	RGCGCY	2 cut(s)	169, 455
BfuAI	ACCTGC	1 cut(s)	855
BlpI	GCTNAGC	1 cut(s)	630
BmcAI	AGTACT	1 cut(s)	331
Bme1390I	CCNGG	4 cut(s)	163, 405, 959, 1076
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	4 cut(s)	163, 405, 959, 1076
BmsI	GCATC	2 cut(s)	907, 944
BplI	GAGNNNNNCTC	2 cut(s)	1122, 1154
Bpu10I	CCTNAGC	1 cut(s)	921
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	2 cut(s)	215, 752
BpuMI	CCSGG	2 cut(s)	163, 959
BsaI	GGTCTC	2 cut(s)	1000, 1065
BsaJI	CCNNGG	5 cut(s)	161, 403, 957, 963, 1092
BsaWI	WCCGGW	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	408, 864, 964
BseBI	CCWGG	2 cut(s)	405, 1076
BseDI	CCNNGG	5 cut(s)	161, 403, 957, 963, 1092
BseGI	GGATG	2 cut(s)	735, 1140
BseLI	CCNNNNNNNGG	3 cut(s)	408, 864, 964
BseMII	CTCAG	1 cut(s)	70
BseRI	GAGGAG	3 cut(s)	566, 1127, 1130
BseYI	CCCAGC	1 cut(s)	442
BsgI	GTGCAG	1 cut(s)	1086
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	2 cut(s)	249, 962
BsiHKAI	GWGCWC	1 cut(s)	1135
BsiSI	CCGG	3 cut(s)	163, 434, 959
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	3 cut(s)	408, 864, 964
BsmAI	GTCTC	3 cut(s)	384, 1000, 1065
BsmBI	CGTCTC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	249, 962
Bso31I	GGTCTC	2 cut(s)	1000, 1065
Bsp1286I	GDGCHC	1 cut(s)	1135
Bsp143I	GATC	1 cut(s)	436
Bsp1720I	GCTNAGC	1 cut(s)	630
Bsp19I	CCATGG	1 cut(s)	963
BspACI	CCGC	8 cut(s)	101, 419, 446, 492, 503, 539, 1010, 1109
BspANI	GGCC	2 cut(s)	249, 962
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	2 cut(s)	528, 597
BspMI	ACCTGC	1 cut(s)	855
BspPI	GGATC	2 cut(s)	431, 444
BspTNI	GGTCTC	2 cut(s)	1000, 1065
BssECI	CCNNGG	5 cut(s)	161, 403, 957, 963, 1092
BssMI	GATC	1 cut(s)	436
BssNAI	GTATAC	1 cut(s)	943
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	2 cut(s)	963, 1092
Bst1107I	GTATAC	1 cut(s)	943
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	405, 1076
Bst4CI	ACNGT	4 cut(s)	181, 411, 567, 657
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	26, 636
BstDEI	CTNAG	5 cut(s)	56, 312, 630, 710, 921
BstDSI	CCRYGG	1 cut(s)	963
BstF5I	GGATG	2 cut(s)	735, 1140
BstFNI	CGCG	1 cut(s)	421
BstH2I	RGCGCY	2 cut(s)	169, 455
BstHHI	GCGC	3 cut(s)	168, 423, 454
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	3 cut(s)	384, 1000, 1065
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	7 cut(s)	34, 165, 586, 635, 932, 968, 1012
BstNI	CCWGG	2 cut(s)	405, 1076
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	4 cut(s)	161, 403, 957, 1074
BstSFI	CTRYAG	2 cut(s)	524, 593
BstUI	CGCG	1 cut(s)	421
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BstZ17I	GTATAC	1 cut(s)	943
BsuRI	GGCC	2 cut(s)	249, 962
BtgI	CCRYGG	1 cut(s)	963
BtgZI	GCGATG	1 cut(s)	986
BtsCI	GGATG	2 cut(s)	735, 1140
BtsI	GCAGTG	1 cut(s)	602
BtsIMutI	CAGTG	2 cut(s)	372, 602
BveI	ACCTGC	1 cut(s)	855
Cac8I	GCNNGC	2 cut(s)	26, 636
CfoI	GCGC	3 cut(s)	168, 423, 454
Csp6I	GTAC	5 cut(s)	221, 279, 330, 787, 1159
CviAII	CATG	7 cut(s)	16, 120, 390, 773, 952, 964, 1033
CviQI	GTAC	5 cut(s)	221, 279, 330, 787, 1159
DdeI	CTNAG	5 cut(s)	56, 312, 630, 710, 921
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
DraI	TTTAAA	1 cut(s)	510
EaeI	YGGCCR	2 cut(s)	247, 960
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	963, 1092
Eco31I	GGTCTC	2 cut(s)	1000, 1065
Eco32I	GATATC	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	403, 1074
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	2 cut(s)	963, 1092
ErhI	CCWWGG	2 cut(s)	963, 1092
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	7 cut(s)	19, 123, 393, 776, 955, 967, 1036
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	7 cut(s)	15, 119, 389, 772, 951, 963, 1032
FauI	CCCGC	1 cut(s)	485
FblI	GTMKAC	1 cut(s)	942
FokI	GGATG	2 cut(s)	722, 1127
FspBI	CTAG	6 cut(s)	303, 333, 339, 471, 483, 740
GlaI	GCGC	3 cut(s)	167, 422, 453
GsaI	CCCAGC	1 cut(s)	446
HaeII	RGCGCY	2 cut(s)	169, 455
HaeIII	GGCC	2 cut(s)	249, 962
HapII	CCGG	3 cut(s)	163, 434, 959
HhaI	GCGC	3 cut(s)	168, 423, 454
Hin1II	CATG	7 cut(s)	19, 123, 393, 776, 955, 967, 1036
Hin6I	GCGC	3 cut(s)	166, 421, 452
HinP1I	GCGC	3 cut(s)	166, 421, 452
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	4 cut(s)	150, 202, 854, 1151
HpaII	CCGG	3 cut(s)	163, 434, 959
HphI	GGTGA	3 cut(s)	439, 632, 883
Hpy166II	GTNNAC	4 cut(s)	223, 350, 787, 943
Hpy188I	TCNGA	2 cut(s)	59, 573
Hpy188III	TCNNGA	5 cut(s)	189, 206, 686, 851, 885
Hpy8I	GTNNAC	4 cut(s)	223, 350, 787, 943
HpyAV	CCTTC	2 cut(s)	465, 971
HpyCH4III	ACNGT	4 cut(s)	181, 411, 567, 657
HpyCH4IV	ACGT	2 cut(s)	108, 115
HpyCH4V	TGCA	9 cut(s)	123, 319, 389, 526, 580, 595, 608, 760, 1103
HpyF10VI	GCNNNNNNNGC	7 cut(s)	34, 165, 586, 635, 932, 968, 1012
HpyF3I	CTNAG	5 cut(s)	56, 312, 630, 710, 921
HpySE526I	ACGT	2 cut(s)	108, 115
Hsp92II	CATG	7 cut(s)	19, 123, 393, 776, 955, 967, 1036
HspAI	GCGC	3 cut(s)	166, 421, 452
Kzo9I	GATC	1 cut(s)	436
LweI	GCATC	2 cut(s)	907, 944
MaeI	CTAG	6 cut(s)	303, 333, 339, 471, 483, 740
MaeII	ACGT	2 cut(s)	108, 115
MaeIII	GTNAC	3 cut(s)	18, 427, 1036
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	4 cut(s)	69, 224, 266, 541
MfeI	CAATTG	1 cut(s)	1145
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	1135
MlsI	TGGCCA	1 cut(s)	249
MluNI	TGGCCA	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	586
Mox20I	TGGCCA	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	76
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	4 cut(s)	509, 663, 780, 1049
MslI	CAYNNNNRTG	2 cut(s)	14, 118
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	2 cut(s)	446, 1015
MspI	CCGG	3 cut(s)	163, 434, 959
MspR9I	CCNGG	4 cut(s)	163, 405, 959, 1076
MunI	CAATTG	1 cut(s)	1145
MvaI	CCWGG	2 cut(s)	405, 1076
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	7 cut(s)	34, 165, 586, 635, 932, 968, 1012
NciI	CCSGG	2 cut(s)	163, 959
NcoI	CCATGG	1 cut(s)	963
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	7 cut(s)	19, 123, 393, 776, 955, 967, 1036
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	2 cut(s)	18, 427
NspI	RCATGY	1 cut(s)	19
PciI	ACATGT	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	4 cut(s)	150, 202, 854, 1151
PscI	ACATGT	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	1049
PsiI	TTATAA	1 cut(s)	1186
Psp1406I	AACGTT	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	403, 1074
PspFI	CCCAGC	1 cut(s)	442
PspGI	CCWGG	2 cut(s)	403, 1074
PspN4I	GGNNCC	1 cut(s)	438
PstI	CTGCAG	2 cut(s)	528, 597
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	1015
RsaI	GTAC	5 cut(s)	222, 280, 331, 788, 1160
RsaNI	GTAC	5 cut(s)	221, 279, 330, 787, 1159
RseI	CAYNNNNRTG	2 cut(s)	14, 118
SaqAI	TTAA	4 cut(s)	509, 663, 780, 1049
Sau3AI	GATC	1 cut(s)	436
ScaI	AGTACT	1 cut(s)	331
ScrFI	CCNGG	4 cut(s)	163, 405, 959, 1076
SduI	GDGCHC	1 cut(s)	1135
SfaNI	GCATC	2 cut(s)	907, 944
SfcI	CTRYAG	2 cut(s)	524, 593
SmiMI	CAYNNNNRTG	2 cut(s)	14, 118
SmlI	CTYRAG	2 cut(s)	230, 767
SmoI	CTYRAG	2 cut(s)	230, 767
SpeI	ACTAGT	2 cut(s)	302, 332
SsiI	CCGC	8 cut(s)	101, 419, 446, 492, 503, 539, 1010, 1109
SspMI	CTAG	6 cut(s)	303, 333, 339, 471, 483, 740
StyD4I	CCNGG	4 cut(s)	161, 403, 957, 1074
StyI	CCWWGG	2 cut(s)	963, 1092
TaaI	ACNGT	4 cut(s)	181, 411, 567, 657
TaiI	ACGT	2 cut(s)	111, 118
TaqI	TCGA	4 cut(s)	49, 80, 170, 458
TaqII	GACCGA	1 cut(s)	281
TatI	WGTACW	2 cut(s)	220, 329
TauI	GCSGC	4 cut(s)	421, 449, 541, 1012
TfiI	GAWTC	4 cut(s)	150, 202, 854, 1151
Tru1I	TTAA	4 cut(s)	509, 663, 780, 1049
Tru9I	TTAA	4 cut(s)	509, 663, 780, 1049
TscAI	CASTG	2 cut(s)	372, 602
TseFI	GTSAC	2 cut(s)	18, 427
Tsp45I	GTSAC	2 cut(s)	18, 427
TspDTI	ATGAA	4 cut(s)	108, 142, 724, 837
TspGWI	ACGGA	3 cut(s)	361, 372, 1055
TspRI	CASTG	2 cut(s)	372, 602
VspI	ATTAAT	1 cut(s)	1049
XapI	RAATTY	4 cut(s)	648, 807, 888, 1178
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	2 cut(s)	865, 970
XmiI	GTMKAC	1 cut(s)	942
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	6 cut(s)	303, 333, 339, 471, 483, 740
ZrmI	AGTACT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.