Rh1AG391600

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010964
Physical Location & Seq
Reverse (-)
62038139 .. 62040094
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG391600.1

Sequence Viewer

Length: 1170 bp
ATGGAAAACACATACCCGCGGAGGCTCCAATCACATACAGCCACGTCACAACAGCACTCTTCTGGGCCTCGTCTTCTACGCAGCAGAAGCGGAAGTAGTACTTCTCCGGCGATAAACAACTCGTTATACTCTCCGAGCCCCAGCCACAGATTCACCACTCCCCGGTCGAAGTCCACCGCCAAATCCAGAACCGGTTACAGAGATGAAGAGAAAAATGAAACTTCCAGCATGCAAAAGAAGGGGCAAGAAAATAGAGAAGGTAAAAATAATAGTCAGAATGCTACTTTTGCTATCCCTAGGTTGTTGCTGCAGCGCGGGAATACTAGCCCTAGTCCTAATCCGCGCCCTAGCTTTGGCTCGACGAAGGGGAGGAAGTCGCCGGTGTCTCCTTCGGCTTGGGCGTTGTCTCCGGGACGGTCTTTGCCATGCACGGTGGGACCGGAGCTGACTGCGGCGGCAGTGGCTTCGCCGAGACCGAGGGTGAAGTCTAGTGGGGGTGGAGTTGGTGGGGTTTTGAAGTATTTTAGGCTTCCGAAGAAAGGGATGAATATACAAGAGGAGGAGTTTCATCAGTTTCGGATTTTGCATAATAGGTTGCTCCAATGGAGGTTTGCCAATGCTCGAGCTCAAGCTGCCATAGTTGCTTCACACAAAGTTGCAAAGGACAGAATGTTCAGTGTGTGGCTTAGAATTTTCAAAATGAGGAACTACATCCTAGATAAGCAACTACAACTGCAAAAGCTCAAGCATCAAGTGAAGGTGTATCAAATTGTGTACCCTCAAATTTCTCTACTGAACGAATGGGGGAAATTGGAGAGAAAAAATCAAGAATCTGTGAGCAGGATGGTGAGGAAGTTATCCGGAATTTCAAATACAATTCCTTTGGTAAATGATGCTAAGGGAGATGTGGCGTCTATATACGAAGCGATGATCACGGCCATGGATGTCATGGCTGGTATTCAAGCAACGGTCACTAAATTGCTCCCGCAGCTCGAAAAGCTGCTCTACATGGTTACGGAGCTTTTGATCATGCAGAAGCAACAAAGAGAATTAGAGAAATATATTACATCGGTCGTTGGTCTTATGAAAGAGGAGACAAGCGTAAGGGTACATCTCATCCAAGTAGCAAATAAAAGTCAAGTCAAGGAGAGGCCCGGGTTTATATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

389

Amino Acids

43.73

Weight (kDa)

10.49

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QWRF PF04484 32 - 351 4.7e-69 QWRF family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 19, 315, 343
AccIII TCCGGA 1 cut(s) 860
AciI CCGC 9 cut(s) 17, 19, 90, 177, 315, 341, 452, 455, 986
AcoI YGGCCR 1 cut(s) 936
AcsI RAATTY 3 cut(s) 690, 783, 864
AcyI GRCGYC 1 cut(s) 911
AfaI GTAC 3 cut(s) 100, 776, 1110
AfiI CCNNNNNNNGG 3 cut(s) 162, 353, 539
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 4 cut(s) 517, 697, 870, 962
AjiI CACGTC 1 cut(s) 45
AloI GAACNNNNNNTCC 2 cut(s) 656, 688
AluBI AGCT 8 cut(s) 351, 445, 626, 632, 742, 991, 1000, 1021
AluI AGCT 8 cut(s) 351, 445, 626, 632, 742, 991, 1000, 1021
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 4 cut(s) 390, 411, 466, 1088
Ama87I CYCGRG 2 cut(s) 621, 1154
Aor13HI TCCGGA 1 cut(s) 860
AoxI GGCC 3 cut(s) 65, 936, 1151
ApeKI GCWGC 6 cut(s) 81, 307, 310, 632, 988, 1000
ApoI RAATTY 3 cut(s) 690, 783, 864
AsiGI ACCGGT 1 cut(s) 191
AspA2I CCTAGG 1 cut(s) 296
AspLEI GCGC 2 cut(s) 315, 345
AspS9I GGNCC 3 cut(s) 65, 437, 1152
AsuC2I CCSGG 4 cut(s) 163, 411, 1155, 1156
AsuHPI GGTGA 3 cut(s) 145, 493, 859
AvaI CYCGRG 2 cut(s) 621, 1154
AvaII GGWCC 1 cut(s) 437
AvrII CCTAGG 1 cut(s) 296
BanII GRGCYC 2 cut(s) 140, 628
BbsI GAAGAC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 6 cut(s) 93, 294, 322, 619, 987, 1000
BccI CCATC 1 cut(s) 838
BceAI ACGGC 1 cut(s) 951
BcgI CGANNNNNNTGC 2 cut(s) 447, 481
BclI TGATCA 2 cut(s) 930, 1026
BcnI CCSGG 4 cut(s) 163, 411, 1155, 1156
BcoDI GTCTC 4 cut(s) 390, 411, 466, 1088
BfaI CTAG 6 cut(s) 297, 324, 330, 348, 489, 716
BfmI CTRYAG 1 cut(s) 308
BisI GCNGC 8 cut(s) 82, 308, 311, 453, 456, 633, 989, 1001
BlnI CCTAGG 1 cut(s) 296
BlsI GCNGC 8 cut(s) 83, 309, 312, 454, 457, 634, 990, 1002
BmcAI AGTACT 1 cut(s) 100
Bme1390I CCNGG 4 cut(s) 163, 411, 1155, 1156
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 2 cut(s) 621, 1154
BmgBI CACGTC 1 cut(s) 45
BmgT120I GGNCC 3 cut(s) 65, 437, 1152
BmiI GGNNCC 2 cut(s) 26, 438
BmrFI CCNGG 4 cut(s) 163, 411, 1155, 1156
BmsI GCATC 2 cut(s) 757, 883
BpiI GAAGAC 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 612, 728
BpuMI CCSGG 4 cut(s) 163, 411, 1155, 1156
BsaHI GRCGYC 1 cut(s) 911
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 6 cut(s) 17, 161, 296, 476, 939, 1154
BsaWI WCCGGW 3 cut(s) 191, 439, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 353, 539
Bse118I RCCGGY 2 cut(s) 191, 379
BseAI TCCGGA 1 cut(s) 860
BseDI CCNNGG 6 cut(s) 17, 161, 296, 476, 939, 1154
BseGI GGATG 5 cut(s) 549, 711, 849, 949, 1116
BseLI CCNNNNNNNGG 3 cut(s) 162, 353, 539
BseRI GAGGAG 3 cut(s) 572, 575, 1106
BseXI GCAGC 6 cut(s) 93, 294, 322, 619, 987, 1000
BseYI CCCAGC 1 cut(s) 140
Bsh1236I CGCG 3 cut(s) 19, 315, 343
Bsh1285I CGRYCG 2 cut(s) 167, 1074
BshFI GGCC 3 cut(s) 67, 938, 1153
BshTI ACCGGT 1 cut(s) 191
BsiEI CGRYCG 2 cut(s) 167, 1074
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 2 cut(s) 621, 1154
BsiSI CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1155
BslFI GGGAC 2 cut(s) 426, 450
BslI CCNNNNNNNGG 3 cut(s) 162, 353, 539
BsmAI GTCTC 4 cut(s) 390, 411, 466, 1088
BsmFI GGGAC 2 cut(s) 426, 450
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 3 cut(s) 67, 938, 1153
Bso31I GGTCTC 1 cut(s) 466
BsoBI CYCGRG 2 cut(s) 621, 1154
Bsp1286I GDGCHC 2 cut(s) 140, 628
Bsp13I TCCGGA 1 cut(s) 860
Bsp143I GATC 2 cut(s) 930, 1026
Bsp19I CCATGG 1 cut(s) 939
BspACI CCGC 9 cut(s) 17, 19, 90, 177, 315, 341, 452, 455, 986
BspANI GGCC 3 cut(s) 67, 938, 1153
BspEI TCCGGA 1 cut(s) 860
BspFNI CGCG 3 cut(s) 19, 315, 343
BspLI GGNNCC 2 cut(s) 26, 438
BspMAI CTGCAG 1 cut(s) 312
BspTNI GGTCTC 1 cut(s) 466
BsrFI RCCGGY 2 cut(s) 191, 379
BssAI RCCGGY 2 cut(s) 191, 379
BssECI CCNNGG 6 cut(s) 17, 161, 296, 476, 939, 1154
BssMI GATC 2 cut(s) 930, 1026
BssNI GRCGYC 1 cut(s) 911
BssT1I CCWWGG 2 cut(s) 296, 939
Bst4CI ACNGT 3 cut(s) 417, 433, 970
Bst6I CTCTTC 2 cut(s) 64, 201
BstACI GRCGYC 1 cut(s) 911
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 2 cut(s) 686, 897
BstDSI CCRYGG 2 cut(s) 17, 939
BstF5I GGATG 5 cut(s) 549, 711, 849, 949, 1116
BstFNI CGCG 3 cut(s) 19, 315, 343
BstHHI GCGC 2 cut(s) 315, 345
BstKTI GATC 2 cut(s) 933, 1029
BstMAI GTCTC 4 cut(s) 390, 411, 466, 1088
BstMBI GATC 2 cut(s) 930, 1026
BstMCI CGRYCG 2 cut(s) 167, 1074
BstMWI GCNNNNNNNGC 7 cut(s) 87, 287, 461, 632, 641, 988, 997
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 4 cut(s) 161, 409, 1153, 1154
BstSFI CTRYAG 1 cut(s) 308
BstUI CGCG 3 cut(s) 19, 315, 343
BstV1I GCAGC 6 cut(s) 93, 294, 322, 619, 987, 1000
BstV2I GAAGAC 1 cut(s) 65
BsuRI GGCC 3 cut(s) 67, 938, 1153
BtgI CCRYGG 2 cut(s) 17, 939
BtgZI GCGATG 1 cut(s) 941
BtrI CACGTC 1 cut(s) 45
BtsCI GGATG 5 cut(s) 549, 711, 849, 949, 1116
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 2 cut(s) 465, 682
Cac8I GCNNGC 1 cut(s) 230
CfoI GCGC 2 cut(s) 315, 345
Cfr10I RCCGGY 2 cut(s) 191, 379
Cfr13I GGNCC 3 cut(s) 65, 437, 1152
Cfr42I CCGCGG 1 cut(s) 20
Cfr9I CCCGGG 1 cut(s) 1154
CseI GACGC 1 cut(s) 900
Csp6I GTAC 3 cut(s) 99, 775, 1109
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 6 cut(s) 229, 426, 940, 949, 1009, 1030
CviQI GTAC 3 cut(s) 99, 775, 1109
DdeI CTNAG 2 cut(s) 686, 897
DpnI GATC 2 cut(s) 932, 1028
DpnII GATC 2 cut(s) 930, 1026
EaeI YGGCCR 1 cut(s) 936
Eam1104I CTCTTC 2 cut(s) 64, 201
EarI CTCTTC 2 cut(s) 64, 201
Ecl136II GAGCTC 1 cut(s) 626
Eco130I CCWWGG 2 cut(s) 296, 939
Eco24I GRGCYC 2 cut(s) 140, 628
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 626
Eco88I CYCGRG 2 cut(s) 621, 1154
EcoICRI GAGCTC 1 cut(s) 626
EcoT14I CCWWGG 2 cut(s) 296, 939
EcoT38I GRGCYC 2 cut(s) 140, 628
ErhI CCWWGG 2 cut(s) 296, 939
FaeI CATG 6 cut(s) 232, 429, 943, 952, 1012, 1033
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FaqI GGGAC 2 cut(s) 426, 450
FatI CATG 6 cut(s) 228, 425, 939, 948, 1008, 1029
FauI CCCGC 3 cut(s) 24, 308, 993
FbaI TGATCA 2 cut(s) 930, 1026
Fnu4HI GCNGC 8 cut(s) 82, 308, 311, 453, 456, 633, 989, 1001
FokI GGATG 5 cut(s) 556, 698, 856, 956, 1103
FriOI GRGCYC 2 cut(s) 140, 628
Fsp4HI GCNGC 8 cut(s) 82, 308, 311, 453, 456, 633, 989, 1001
FspBI CTAG 6 cut(s) 297, 324, 330, 348, 489, 716
GlaI GCGC 2 cut(s) 314, 344
GluI GCNGC 8 cut(s) 82, 308, 311, 453, 456, 633, 989, 1001
GsaI CCCAGC 1 cut(s) 144
HaeIII GGCC 3 cut(s) 67, 938, 1153
HapII CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1155
HgaI GACGC 1 cut(s) 900
HhaI GCGC 2 cut(s) 315, 345
Hin1I GRCGYC 1 cut(s) 911
Hin1II CATG 6 cut(s) 232, 429, 943, 952, 1012, 1033
Hin6I GCGC 2 cut(s) 313, 343
HinP1I GCGC 2 cut(s) 313, 343
HinfI GANTC 2 cut(s) 150, 830
HpaII CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1155
HphI GGTGA 3 cut(s) 145, 493, 859
Hpy166II GTNNAC 2 cut(s) 174, 775
Hpy188I TCNGA 4 cut(s) 135, 276, 534, 579
Hpy188III TCNNGA 3 cut(s) 186, 827, 861
Hpy8I GTNNAC 2 cut(s) 174, 775
Hpy99I CGWCG 1 cut(s) 364
HpyAV CCTTC 5 cut(s) 232, 251, 358, 399, 751
HpyCH4III ACNGT 3 cut(s) 417, 433, 970
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 7 cut(s) 232, 310, 429, 586, 659, 736, 1033
HpyF10VI GCNNNNNNNGC 7 cut(s) 87, 287, 461, 632, 641, 988, 997
HpyF3I CTNAG 2 cut(s) 686, 897
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 1 cut(s) 911
Hsp92II CATG 6 cut(s) 232, 429, 943, 952, 1012, 1033
HspAI GCGC 2 cut(s) 313, 343
Kpn2I TCCGGA 1 cut(s) 860
Ksp22I TGATCA 2 cut(s) 930, 1026
KspI CCGCGG 1 cut(s) 20
Kzo9I GATC 2 cut(s) 930, 1026
LmnI GCTCC 5 cut(s) 30, 442, 603, 987, 1018
Lsp1109I GCAGC 6 cut(s) 93, 294, 322, 619, 987, 1000
LweI GCATC 2 cut(s) 757, 883
MaeI CTAG 6 cut(s) 297, 324, 330, 348, 489, 716
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 4 cut(s) 45, 194, 970, 1012
MalI GATC 2 cut(s) 932, 1028
MboI GATC 2 cut(s) 930, 1026
MboII GAAGA 4 cut(s) 51, 65, 218, 547
MhlI GDGCHC 2 cut(s) 140, 628
MluCI AATT 8 cut(s) 690, 768, 783, 809, 864, 876, 977, 1049
MroI TCCGGA 1 cut(s) 860
MseI TTAA 1 cut(s) 1168
MslI CAYNNNNRTG 1 cut(s) 938
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1155
MspR9I CCNGG 4 cut(s) 163, 411, 1155, 1156
Mva1269I GAATGC 1 cut(s) 283
MvnI CGCG 3 cut(s) 19, 315, 343
MwoI GCNNNNNNNGC 7 cut(s) 87, 287, 461, 632, 641, 988, 997
NciI CCSGG 4 cut(s) 163, 411, 1155, 1156
NcoI CCATGG 1 cut(s) 939
NdeII GATC 2 cut(s) 930, 1026
NlaIII CATG 6 cut(s) 232, 429, 943, 952, 1012, 1033
NlaIV GGNNCC 2 cut(s) 26, 438
NmeAIII GCCGAG 1 cut(s) 495
NmuCI GTSAC 2 cut(s) 45, 970
NspI RCATGY 1 cut(s) 232
PaeI GCATGC 1 cut(s) 232
PaeR7I CTCGAG 1 cut(s) 621
PcsI WCGNNNNNNNCGW 2 cut(s) 398, 473
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 150, 830
PfoI TCCNGGA 1 cut(s) 409
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 8 cut(s) 83, 309, 312, 454, 457, 634, 990, 1002
Psp124BI GAGCTC 1 cut(s) 628
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 26, 438
PspPI GGNCC 3 cut(s) 65, 437, 1152
PspXI VCTCGAGB 1 cut(s) 621
PstI CTGCAG 1 cut(s) 312
RsaI GTAC 3 cut(s) 100, 776, 1110
RsaNI GTAC 3 cut(s) 99, 775, 1109
RseI CAYNNNNRTG 1 cut(s) 938
SacI GAGCTC 1 cut(s) 628
SacII CCGCGG 1 cut(s) 20
SaqAI TTAA 1 cut(s) 1168
SatI GCNGC 8 cut(s) 82, 308, 311, 453, 456, 633, 989, 1001
Sau3AI GATC 2 cut(s) 930, 1026
Sau96I GGNCC 3 cut(s) 65, 437, 1152
ScaI AGTACT 1 cut(s) 100
ScrFI CCNGG 4 cut(s) 163, 411, 1155, 1156
SduI GDGCHC 2 cut(s) 140, 628
SfaNI GCATC 2 cut(s) 757, 883
SfcI CTRYAG 1 cut(s) 308
Sfr274I CTCGAG 1 cut(s) 621
Sfr303I CCGCGG 1 cut(s) 20
SgrAI CRCCGGYG 1 cut(s) 379
SgrBI CCGCGG 1 cut(s) 20
SinI GGWCC 1 cut(s) 437
SlaI CTCGAG 1 cut(s) 621
SmaI CCCGGG 1 cut(s) 1156
SmiMI CAYNNNNRTG 1 cut(s) 938
SmlI CTYRAG 3 cut(s) 621, 627, 743
SmoI CTYRAG 3 cut(s) 621, 627, 743
SphI GCATGC 1 cut(s) 232
Sse9I AATT 8 cut(s) 690, 768, 783, 809, 864, 876, 977, 1049
SsiI CCGC 9 cut(s) 17, 19, 90, 177, 315, 341, 452, 455, 986
SspMI CTAG 6 cut(s) 297, 324, 330, 348, 489, 716
SstI GAGCTC 1 cut(s) 628
StyD4I CCNGG 4 cut(s) 161, 409, 1153, 1154
StyI CCWWGG 2 cut(s) 296, 939
TaaI ACNGT 3 cut(s) 417, 433, 970
TaiI ACGT 1 cut(s) 47
TaqI TCGA 4 cut(s) 167, 359, 622, 993
TaqII GACCGA 2 cut(s) 490, 1060
TasI AATT 8 cut(s) 690, 768, 783, 809, 864, 876, 977, 1049
TatI WGTACW 1 cut(s) 98
TauI GCSGC 2 cut(s) 455, 458
TfiI GAWTC 2 cut(s) 150, 830
Tru1I TTAA 1 cut(s) 1168
Tru9I TTAA 1 cut(s) 1168
TscAI CASTG 2 cut(s) 465, 682
TseFI GTSAC 2 cut(s) 45, 970
TseI GCWGC 6 cut(s) 81, 307, 310, 632, 988, 1000
Tsp45I GTSAC 2 cut(s) 45, 970
TspDTI ATGAA 5 cut(s) 219, 231, 557, 560, 1100
TspGWI ACGGA 1 cut(s) 1031
TspMI CCCGGG 1 cut(s) 1154
TspRI CASTG 2 cut(s) 465, 682
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 3 cut(s) 690, 783, 864
XceI RCATGY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 621
XmaI CCCGGG 1 cut(s) 1154
XmaJI CCTAGG 1 cut(s) 296
XspI CTAG 6 cut(s) 297, 324, 330, 348, 489, 716
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.