Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022506.1

Orthogroup ID

OG0010964

Physical Location & Seq

Genomic Coordinates Forward (+)

2295 .. 4038

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022506.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atggaaaacacatacccgcggaggctccaatcacatacagccacgtcacaacagcactcttctgggcctcgtcttctacgcagcagaagcggaagtagtacttctccggcgataaacaactcgttatactctcggagccccagccacagattcaccactccccggtcgaagtccaccgccaaatccagaaccggttacagagatgaagagaaaacggtaacttccagcatgcaaaagaaggggcaagaaaatagagaaggtaaaaataatagtcagaatgctacttttgctatccctaggtttttgctgcagcgcgggaatactagccctagtccgagtccacgccctagctttggctcgacgaaggggaggaagtcgccggtctctccttcggcttgggcgttgtctccgggacggtcttttccatgcacggtgggaccggagctgactgcggcggcagtggcttcgccgagaccgagggtgaagtctagtggggttttgaagtattttaggcttccgaagaaagggatgactatacaagaggaggagtttcatcagtttcggattttgcataataggttgctccaatggagatttgccaatgctcgagctcaagctgccatggttgcttcacacaaagttgcaaaggacagaatgttcagtgtgtggcttagaattttcaaaatgaggaactacatcctagataagcaactacaactgcaaaagctcaagcatcaagtgaaggtgtatcaaattgtgtaccctcaaatttctctactgaacgaatgggggaaattggagagaaaaaatcaagaatctgtgagcaggatggtgaggaagttatccggaatttcaaatataattcctttggtaaatgatgctaagggagatgtggcgtctatatacgaaacgatgatcacggccatggatgccatggctggtattcaagcaacggtcactaaattgctcccgcagctcgaaaagctgctctacatggttacggagcttttgatcatgcagaagcaacaaagagaattagagaaatatattacatcggtcgttggtcttatggttgatatattagccagtgtgttatttcatttgttatcttacatccactaccgagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

376

Amino Acids

42.67

Weight (kDa)

10.52

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25190 AT4G25190
fragaria_vesca	FvH4_7g27280 FvH4_7g27280
malus_domestica	MD01G1181900.v1.1 MD07G1252100.v1.1
prunus_persica	Prupe.2G275600_v2.0.a1
pyrus_communis	pycom01g19170 pycom07g22440 pycom07g22450
rosa_chinensis	RchiOBHm_Chr1g0374111
rosa_laevigata	RLG00000026762
rosa_multiflora	Rmu_co8026676.1_g000001 Rmu_sc0022506.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283720
rosa_samantha	Rh1AG391600 Rh1BG355700 Rh1CG368600 Rh1DG386300
rosa_wichuraiana	Rw1G034400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	19, 315
AccIII	TCCGGA	1 cut(s)	845
AciI	CCGC	8 cut(s)	17, 19, 90, 177, 315, 452, 455, 971
AcoI	YGGCCR	1 cut(s)	921
AcsI	RAATTY	3 cut(s)	675, 768, 849
AcyI	GRCGYC	1 cut(s)	896
AfaI	GTAC	2 cut(s)	100, 761
AfiI	CCNNNNNNNGG	3 cut(s)	162, 353, 524
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	502, 682, 855, 947
AjiI	CACGTC	1 cut(s)	45
AloI	GAACNNNNNNTCC	2 cut(s)	641, 673
AluBI	AGCT	8 cut(s)	351, 445, 611, 617, 727, 976, 985, 1006
AluI	AGCT	8 cut(s)	351, 445, 611, 617, 727, 976, 985, 1006
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	3 cut(s)	388, 411, 466
Ama87I	CYCGRG	1 cut(s)	606
Aor13HI	TCCGGA	1 cut(s)	845
AoxI	GGCC	2 cut(s)	65, 921
ApeKI	GCWGC	6 cut(s)	81, 307, 310, 617, 973, 985
ApoI	RAATTY	3 cut(s)	675, 768, 849
AsiGI	ACCGGT	1 cut(s)	191
AspA2I	CCTAGG	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	65, 437
AsuC2I	CCSGG	2 cut(s)	163, 411
AsuHPI	GGTGA	3 cut(s)	145, 493, 844
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	437
AvrII	CCTAGG	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	140, 613
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	6 cut(s)	93, 294, 322, 604, 972, 985
BccI	CCATC	1 cut(s)	823
BceAI	ACGGC	1 cut(s)	936
BcgI	CGANNNNNNTGC	2 cut(s)	447, 481
BclI	TGATCA	2 cut(s)	915, 1011
BcnI	CCSGG	2 cut(s)	163, 411
BcoDI	GTCTC	3 cut(s)	388, 411, 466
BfaI	CTAG	6 cut(s)	297, 324, 330, 348, 489, 701
BfmI	CTRYAG	1 cut(s)	308
BisI	GCNGC	8 cut(s)	82, 308, 311, 453, 456, 618, 974, 986
BlnI	CCTAGG	1 cut(s)	296
BlsI	GCNGC	8 cut(s)	83, 309, 312, 454, 457, 619, 975, 987
BmcAI	AGTACT	1 cut(s)	100
Bme1390I	CCNGG	2 cut(s)	163, 411
Bme18I	GGWCC	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	606
BmgBI	CACGTC	1 cut(s)	45
BmgT120I	GGNCC	2 cut(s)	65, 437
BmiI	GGNNCC	3 cut(s)	26, 137, 438
BmrFI	CCNGG	2 cut(s)	163, 411
BmsI	GCATC	3 cut(s)	742, 868, 919
BpiI	GAAGAC	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	2 cut(s)	597, 713
BpuMI	CCSGG	2 cut(s)	163, 411
BsaHI	GRCGYC	1 cut(s)	896
BsaI	GGTCTC	2 cut(s)	388, 466
BsaJI	CCNNGG	7 cut(s)	17, 161, 296, 476, 621, 924, 933
BsaWI	WCCGGW	3 cut(s)	191, 439, 845
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 353, 524
Bse118I	RCCGGY	2 cut(s)	191, 379
Bse1I	ACTGG	1 cut(s)	1086
BseAI	TCCGGA	1 cut(s)	845
BseDI	CCNNGG	7 cut(s)	17, 161, 296, 476, 621, 924, 933
BseGI	GGATG	5 cut(s)	534, 696, 834, 934, 1113
BseLI	CCNNNNNNNGG	3 cut(s)	162, 353, 524
BseNI	ACTGG	1 cut(s)	1086
BseRI	GAGGAG	2 cut(s)	557, 560
BseXI	GCAGC	6 cut(s)	93, 294, 322, 604, 972, 985
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	19, 315
Bsh1285I	CGRYCG	2 cut(s)	167, 1059
BshFI	GGCC	2 cut(s)	67, 923
BshTI	ACCGGT	1 cut(s)	191
BsiEI	CGRYCG	2 cut(s)	167, 1059
BsiHKAI	GWGCWC	1 cut(s)	613
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	7 cut(s)	107, 163, 192, 380, 410, 440, 846
BslFI	GGGAC	2 cut(s)	426, 450
BslI	CCNNNNNNNGG	3 cut(s)	162, 353, 524
BsmAI	GTCTC	3 cut(s)	388, 411, 466
BsmFI	GGGAC	2 cut(s)	426, 450
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	67, 923
Bso31I	GGTCTC	2 cut(s)	388, 466
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	2 cut(s)	140, 613
Bsp13I	TCCGGA	1 cut(s)	845
Bsp143I	GATC	2 cut(s)	915, 1011
Bsp19I	CCATGG	3 cut(s)	621, 924, 933
BspACI	CCGC	8 cut(s)	17, 19, 90, 177, 315, 452, 455, 971
BspANI	GGCC	2 cut(s)	67, 923
BspEI	TCCGGA	1 cut(s)	845
BspFNI	CGCG	2 cut(s)	19, 315
BspLI	GGNNCC	3 cut(s)	26, 137, 438
BspMAI	CTGCAG	1 cut(s)	312
BspTNI	GGTCTC	2 cut(s)	388, 466
BsrFI	RCCGGY	2 cut(s)	191, 379
BsrI	ACTGG	1 cut(s)	1086
BssAI	RCCGGY	2 cut(s)	191, 379
BssECI	CCNNGG	7 cut(s)	17, 161, 296, 476, 621, 924, 933
BssMI	GATC	2 cut(s)	915, 1011
BssNI	GRCGYC	1 cut(s)	896
BssT1I	CCWWGG	4 cut(s)	296, 621, 924, 933
Bst4CI	ACNGT	4 cut(s)	217, 417, 433, 955
Bst6I	CTCTTC	2 cut(s)	64, 201
BstACI	GRCGYC	1 cut(s)	896
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	671, 882
BstDSI	CCRYGG	4 cut(s)	17, 621, 924, 933
BstF5I	GGATG	5 cut(s)	534, 696, 834, 934, 1113
BstFNI	CGCG	2 cut(s)	19, 315
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	2 cut(s)	918, 1014
BstMAI	GTCTC	3 cut(s)	388, 411, 466
BstMBI	GATC	2 cut(s)	915, 1011
BstMCI	CGRYCG	2 cut(s)	167, 1059
BstMWI	GCNNNNNNNGC	8 cut(s)	87, 287, 461, 617, 626, 929, 973, 982
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	161, 409
BstSFI	CTRYAG	1 cut(s)	308
BstUI	CGCG	2 cut(s)	19, 315
BstV1I	GCAGC	6 cut(s)	93, 294, 322, 604, 972, 985
BstV2I	GAAGAC	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	67, 923
BtgI	CCRYGG	4 cut(s)	17, 621, 924, 933
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	5 cut(s)	534, 696, 834, 934, 1113
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	3 cut(s)	465, 667, 1093
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	315
Cfr10I	RCCGGY	2 cut(s)	191, 379
Cfr13I	GGNCC	2 cut(s)	65, 437
Cfr42I	CCGCGG	1 cut(s)	20
CseI	GACGC	1 cut(s)	885
Csp6I	GTAC	2 cut(s)	99, 760
CspAI	ACCGGT	1 cut(s)	191
CviAII	CATG	7 cut(s)	229, 426, 622, 925, 934, 994, 1015
CviQI	GTAC	2 cut(s)	99, 760
DdeI	CTNAG	2 cut(s)	671, 882
DpnI	GATC	2 cut(s)	917, 1013
DpnII	GATC	2 cut(s)	915, 1011
EaeI	YGGCCR	1 cut(s)	921
Eam1104I	CTCTTC	2 cut(s)	64, 201
EarI	CTCTTC	2 cut(s)	64, 201
Ecl136II	GAGCTC	1 cut(s)	611
Eco130I	CCWWGG	4 cut(s)	296, 621, 924, 933
Eco24I	GRGCYC	2 cut(s)	140, 613
Eco31I	GGTCTC	2 cut(s)	388, 466
Eco47I	GGWCC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	611
Eco88I	CYCGRG	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	611
EcoT14I	CCWWGG	4 cut(s)	296, 621, 924, 933
EcoT38I	GRGCYC	2 cut(s)	140, 613
ErhI	CCWWGG	4 cut(s)	296, 621, 924, 933
FaeI	CATG	7 cut(s)	232, 429, 625, 928, 937, 997, 1018
FalI	AAGNNNNNCTT	2 cut(s)	85, 117
FaqI	GGGAC	2 cut(s)	426, 450
FatI	CATG	7 cut(s)	228, 425, 621, 924, 933, 993, 1014
FauI	CCCGC	3 cut(s)	24, 308, 978
FbaI	TGATCA	2 cut(s)	915, 1011
Fnu4HI	GCNGC	8 cut(s)	82, 308, 311, 453, 456, 618, 974, 986
FokI	GGATG	5 cut(s)	541, 683, 841, 941, 1100
FriOI	GRGCYC	2 cut(s)	140, 613
Fsp4HI	GCNGC	8 cut(s)	82, 308, 311, 453, 456, 618, 974, 986
FspBI	CTAG	6 cut(s)	297, 324, 330, 348, 489, 701
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	8 cut(s)	82, 308, 311, 453, 456, 618, 974, 986
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	67, 923
HapII	CCGG	7 cut(s)	107, 163, 192, 380, 410, 440, 846
HgaI	GACGC	1 cut(s)	885
HhaI	GCGC	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	896
Hin1II	CATG	7 cut(s)	232, 429, 625, 928, 937, 997, 1018
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	3 cut(s)	150, 337, 815
HpaII	CCGG	7 cut(s)	107, 163, 192, 380, 410, 440, 846
HphI	GGTGA	3 cut(s)	145, 493, 844
Hpy166II	GTNNAC	3 cut(s)	174, 341, 760
Hpy188I	TCNGA	5 cut(s)	135, 276, 336, 519, 564
Hpy188III	TCNNGA	3 cut(s)	186, 812, 846
Hpy8I	GTNNAC	3 cut(s)	174, 341, 760
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	5 cut(s)	232, 251, 358, 399, 736
HpyCH4III	ACNGT	4 cut(s)	217, 417, 433, 955
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	7 cut(s)	232, 310, 429, 571, 644, 721, 1018
HpyF10VI	GCNNNNNNNGC	8 cut(s)	87, 287, 461, 617, 626, 929, 973, 982
HpyF3I	CTNAG	2 cut(s)	671, 882
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	896
Hsp92II	CATG	7 cut(s)	232, 429, 625, 928, 937, 997, 1018
HspAI	GCGC	1 cut(s)	313
Kpn2I	TCCGGA	1 cut(s)	845
Ksp22I	TGATCA	2 cut(s)	915, 1011
KspI	CCGCGG	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	915, 1011
LmnI	GCTCC	6 cut(s)	30, 135, 442, 588, 972, 1003
Lsp1109I	GCAGC	6 cut(s)	93, 294, 322, 604, 972, 985
LweI	GCATC	3 cut(s)	742, 868, 919
MaeI	CTAG	6 cut(s)	297, 324, 330, 348, 489, 701
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	5 cut(s)	45, 194, 217, 955, 997
MalI	GATC	2 cut(s)	917, 1013
MboI	GATC	2 cut(s)	915, 1011
MboII	GAAGA	4 cut(s)	51, 65, 218, 532
MhlI	GDGCHC	2 cut(s)	140, 613
MluCI	AATT	8 cut(s)	675, 753, 768, 794, 849, 861, 962, 1034
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	9 cut(s)	15, 78, 363, 471, 535, 538, 681, 774, 828
MroI	TCCGGA	1 cut(s)	845
MslI	CAYNNNNRTG	1 cut(s)	923
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	7 cut(s)	107, 163, 192, 380, 410, 440, 846
MspR9I	CCNGG	2 cut(s)	163, 411
Mva1269I	GAATGC	1 cut(s)	283
MvnI	CGCG	2 cut(s)	19, 315
MwoI	GCNNNNNNNGC	8 cut(s)	87, 287, 461, 617, 626, 929, 973, 982
NciI	CCSGG	2 cut(s)	163, 411
NcoI	CCATGG	3 cut(s)	621, 924, 933
NdeII	GATC	2 cut(s)	915, 1011
NlaIII	CATG	7 cut(s)	232, 429, 625, 928, 937, 997, 1018
NlaIV	GGNNCC	3 cut(s)	26, 137, 438
NmeAIII	GCCGAG	1 cut(s)	495
NmuCI	GTSAC	2 cut(s)	45, 955
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	2 cut(s)	398, 473
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	150, 815
PfoI	TCCNGGA	1 cut(s)	409
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	8 cut(s)	83, 309, 312, 454, 457, 619, 975, 987
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	613
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	3 cut(s)	26, 137, 438
PspPI	GGNCC	2 cut(s)	65, 437
PspXI	VCTCGAGB	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	312
RsaI	GTAC	2 cut(s)	100, 761
RsaNI	GTAC	2 cut(s)	99, 760
RseI	CAYNNNNRTG	1 cut(s)	923
SacI	GAGCTC	1 cut(s)	613
SacII	CCGCGG	1 cut(s)	20
SatI	GCNGC	8 cut(s)	82, 308, 311, 453, 456, 618, 974, 986
Sau3AI	GATC	2 cut(s)	915, 1011
Sau96I	GGNCC	2 cut(s)	65, 437
ScaI	AGTACT	1 cut(s)	100
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	163, 411
SduI	GDGCHC	2 cut(s)	140, 613
SfaNI	GCATC	3 cut(s)	742, 868, 919
SfcI	CTRYAG	1 cut(s)	308
Sfr274I	CTCGAG	1 cut(s)	606
Sfr303I	CCGCGG	1 cut(s)	20
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	437
SlaI	CTCGAG	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	923
SmlI	CTYRAG	3 cut(s)	606, 612, 728
SmoI	CTYRAG	3 cut(s)	606, 612, 728
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	8 cut(s)	675, 753, 768, 794, 849, 861, 962, 1034
SsiI	CCGC	8 cut(s)	17, 19, 90, 177, 315, 452, 455, 971
SspMI	CTAG	6 cut(s)	297, 324, 330, 348, 489, 701
SstI	GAGCTC	1 cut(s)	613
StyD4I	CCNGG	2 cut(s)	161, 409
StyI	CCWWGG	4 cut(s)	296, 621, 924, 933
TaaI	ACNGT	4 cut(s)	217, 417, 433, 955
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	4 cut(s)	167, 359, 607, 978
TaqII	GACCGA	2 cut(s)	490, 1045
TasI	AATT	8 cut(s)	675, 753, 768, 794, 849, 861, 962, 1034
TatI	WGTACW	1 cut(s)	98
TauI	GCSGC	2 cut(s)	455, 458
TfiI	GAWTC	2 cut(s)	150, 815
TscAI	CASTG	3 cut(s)	465, 667, 1093
TseFI	GTSAC	2 cut(s)	45, 955
TseI	GCWGC	6 cut(s)	81, 307, 310, 617, 973, 985
Tsp45I	GTSAC	2 cut(s)	45, 955
TspDTI	ATGAA	3 cut(s)	219, 542, 1088
TspGWI	ACGGA	1 cut(s)	1016
TspRI	CASTG	3 cut(s)	465, 667, 1093
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	3 cut(s)	675, 768, 849
XceI	RCATGY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	931
XhoI	CTCGAG	1 cut(s)	606
XmaJI	CCTAGG	1 cut(s)	296
XspI	CTAG	6 cut(s)	297, 324, 330, 348, 489, 701
ZrmI	AGTACT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.