Rh1CG368600

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010964
Physical Location & Seq
Reverse (-)
63935971 .. 63939355
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG368600.1

Sequence Viewer

Length: 1188 bp
ATGGAAAACACATACCCGCGGAGGCTCCAATCACATACAGCCACGTCACAACAGCACTCTTCTGGGCCTCGTCTTCTACGCAGCAGAAGCGGAAGTAGTACTTCTCCGGCGATAAACAACTCGTTATACTCTCCGAGCCCCAGCCACAGATTCACCACTCCCCGGTCGAAGTCCACCGCCAAATCCAGAACCGGTTACAGAGATGAAGAGAAAACGGTAACTTCAAGCATGCAAAAGAAGGGGCAAGAAAATAGAGAAGGTAAAAATAATAGTCAGAATGCTACTTTTGCTATCCCTAGGTTGTTGCTGCAGCGCGGGAATACTAGCCCTAGTCCGAGTCCACGCCCTAGCTTTGGCTCGACGAAGGGGAGGAAGTCGCCGGTGTCTCCTTCGGCTTGGGCGTTGTCTCCGGGACGGTCTTTGCCATGCACGGTAGGACCGGAGCTGACTGCGGCGGCAGTGGCTTCGCCGAGACCGAGGGTGAAGTCTAGTGGGGGTGGAGTTGGTGGGGTTTTGAAGTATTTTAGGCTTCCGAAGAAAGGGATGACTATACAAGAGGAGGAGTTTCATCAGTTTCGGATTTTGCATAATAGGTTGCTCCAATGGAGGTTTGCCAATGCTCGAGCTCAAGCTGCCATGGTTGCTTCACACAAAGTTGCACAGGACAGAATGTTCAGTGTGTGGCTTAGAATTTTCAAAATGAGGAACTACATCCTAGATAAGCAACTACAACTGCAAAAGCTCAAGCATCAAGTGAAGGTGTATCAAATTGTGTACCCTCAAATTTCTCTACTGAACGAATGGGGGAAATTGGAGAGAAAAAATCAAGAATCTGTGAGCAGGATGGTGAGGAAGTTATCCGGAATTTCAAATACAATTCCTTTGGTAAATGATGCTAAGGGAGATGTGGCGTCTATATACGAAGCGATGATCACGGCCATGGATGTCATGGCTGGTATTCAAGCAACGGTCACTAAATTGCTCCCGCAGCTGGAAAAGCTGCTCTACATGGTTACGGAGCTTTTGATCACGCAGAAGCAACAAAGAGAATTAGAGAAATATTTAACATCGGTCGTTGGTCTTATGAAAGAGGAGACAAGCGTGAGAGTACATCTCGTCCAAGTAGCAAATGAAAGTCAAGGAGAGGCCCGGATCAACAATACCCATGTTACTACCAAAACATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

395

Amino Acids

44.26

Weight (kDa)

10.51

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QWRF PF04484 32 - 351 3.4e-69 QWRF family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 19, 315
AccIII TCCGGA 1 cut(s) 860
AciI CCGC 8 cut(s) 17, 19, 90, 177, 315, 452, 455, 986
AclWI GGATC 1 cut(s) 1160
AcoI YGGCCR 1 cut(s) 936
AcsI RAATTY 3 cut(s) 690, 783, 864
AcyI GRCGYC 1 cut(s) 911
AfaI GTAC 3 cut(s) 100, 776, 1110
AfiI CCNNNNNNNGG 4 cut(s) 162, 353, 539, 991
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 5 cut(s) 225, 517, 697, 870, 962
AjiI CACGTC 1 cut(s) 45
AloI GAACNNNNNNTCC 2 cut(s) 656, 688
AluBI AGCT 8 cut(s) 351, 445, 626, 632, 742, 991, 1000, 1021
AluI AGCT 8 cut(s) 351, 445, 626, 632, 742, 991, 1000, 1021
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 4 cut(s) 390, 411, 466, 1088
AlwI GGATC 1 cut(s) 1160
Ama87I CYCGRG 1 cut(s) 621
Aor13HI TCCGGA 1 cut(s) 860
AoxI GGCC 3 cut(s) 65, 936, 1146
ApeKI GCWGC 6 cut(s) 81, 307, 310, 632, 988, 1000
ApoI RAATTY 3 cut(s) 690, 783, 864
AsiGI ACCGGT 1 cut(s) 191
AspA2I CCTAGG 1 cut(s) 296
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 3 cut(s) 65, 437, 1147
AsuC2I CCSGG 3 cut(s) 163, 411, 1150
AsuHPI GGTGA 3 cut(s) 145, 493, 859
AvaI CYCGRG 1 cut(s) 621
AvaII GGWCC 1 cut(s) 437
AvrII CCTAGG 1 cut(s) 296
BanII GRGCYC 2 cut(s) 140, 628
BbsI GAAGAC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 6 cut(s) 93, 294, 322, 619, 987, 1000
BccI CCATC 1 cut(s) 838
BceAI ACGGC 1 cut(s) 951
BcgI CGANNNNNNTGC 2 cut(s) 447, 481
BclI TGATCA 2 cut(s) 930, 1026
BcnI CCSGG 3 cut(s) 163, 411, 1150
BcoDI GTCTC 4 cut(s) 390, 411, 466, 1088
BfaI CTAG 6 cut(s) 297, 324, 330, 348, 489, 716
BfmI CTRYAG 1 cut(s) 308
BisI GCNGC 8 cut(s) 82, 308, 311, 453, 456, 633, 989, 1001
BlnI CCTAGG 1 cut(s) 296
BlsI GCNGC 8 cut(s) 83, 309, 312, 454, 457, 634, 990, 1002
BmcAI AGTACT 1 cut(s) 100
Bme1390I CCNGG 3 cut(s) 163, 411, 1150
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 1 cut(s) 621
BmgBI CACGTC 1 cut(s) 45
BmgT120I GGNCC 3 cut(s) 65, 437, 1147
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 3 cut(s) 163, 411, 1150
BmsI GCATC 2 cut(s) 757, 883
BpiI GAAGAC 1 cut(s) 65
BplI GAGNNNNNCTC 2 cut(s) 1098, 1130
Bpu10I CCTNAGC 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 612, 728
BpuMI CCSGG 3 cut(s) 163, 411, 1150
BsaHI GRCGYC 1 cut(s) 911
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 6 cut(s) 17, 161, 296, 476, 636, 939
BsaWI WCCGGW 3 cut(s) 191, 439, 860
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 353, 539, 991
Bse118I RCCGGY 2 cut(s) 191, 379
BseAI TCCGGA 1 cut(s) 860
BseDI CCNNGG 6 cut(s) 17, 161, 296, 476, 636, 939
BseGI GGATG 4 cut(s) 549, 711, 849, 949
BseLI CCNNNNNNNGG 4 cut(s) 162, 353, 539, 991
BseRI GAGGAG 3 cut(s) 572, 575, 1106
BseXI GCAGC 6 cut(s) 93, 294, 322, 619, 987, 1000
BseYI CCCAGC 1 cut(s) 140
Bsh1236I CGCG 2 cut(s) 19, 315
Bsh1285I CGRYCG 2 cut(s) 167, 1074
BshFI GGCC 3 cut(s) 67, 938, 1148
BshTI ACCGGT 1 cut(s) 191
BsiEI CGRYCG 2 cut(s) 167, 1074
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 1 cut(s) 621
BsiSI CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1150
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 4 cut(s) 162, 353, 539, 991
BsmAI GTCTC 4 cut(s) 390, 411, 466, 1088
BsmFI GGGAC 1 cut(s) 426
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 3 cut(s) 67, 938, 1148
Bso31I GGTCTC 1 cut(s) 466
BsoBI CYCGRG 1 cut(s) 621
Bsp1286I GDGCHC 2 cut(s) 140, 628
Bsp13I TCCGGA 1 cut(s) 860
Bsp143I GATC 3 cut(s) 930, 1026, 1152
Bsp19I CCATGG 2 cut(s) 636, 939
BspACI CCGC 8 cut(s) 17, 19, 90, 177, 315, 452, 455, 986
BspANI GGCC 3 cut(s) 67, 938, 1148
BspEI TCCGGA 1 cut(s) 860
BspFNI CGCG 2 cut(s) 19, 315
BspLI GGNNCC 1 cut(s) 26
BspMAI CTGCAG 1 cut(s) 312
BspPI GGATC 1 cut(s) 1160
BspTNI GGTCTC 1 cut(s) 466
BsrFI RCCGGY 2 cut(s) 191, 379
BssAI RCCGGY 2 cut(s) 191, 379
BssECI CCNNGG 6 cut(s) 17, 161, 296, 476, 636, 939
BssMI GATC 3 cut(s) 930, 1026, 1152
BssNI GRCGYC 1 cut(s) 911
BssT1I CCWWGG 3 cut(s) 296, 636, 939
Bst4CI ACNGT 4 cut(s) 217, 417, 433, 970
Bst6I CTCTTC 2 cut(s) 64, 201
BstACI GRCGYC 1 cut(s) 911
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 2 cut(s) 686, 897
BstDSI CCRYGG 3 cut(s) 17, 636, 939
BstF5I GGATG 4 cut(s) 549, 711, 849, 949
BstFNI CGCG 2 cut(s) 19, 315
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 3 cut(s) 933, 1029, 1155
BstMAI GTCTC 4 cut(s) 390, 411, 466, 1088
BstMBI GATC 3 cut(s) 930, 1026, 1152
BstMCI CGRYCG 2 cut(s) 167, 1074
BstMWI GCNNNNNNNGC 7 cut(s) 87, 287, 461, 632, 641, 988, 997
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 3 cut(s) 161, 409, 1148
BstSFI CTRYAG 1 cut(s) 308
BstUI CGCG 2 cut(s) 19, 315
BstV1I GCAGC 6 cut(s) 93, 294, 322, 619, 987, 1000
BstV2I GAAGAC 1 cut(s) 65
BsuRI GGCC 3 cut(s) 67, 938, 1148
BtgI CCRYGG 3 cut(s) 17, 636, 939
BtgZI GCGATG 1 cut(s) 941
BtrI CACGTC 1 cut(s) 45
BtsCI GGATG 4 cut(s) 549, 711, 849, 949
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 2 cut(s) 465, 682
Cac8I GCNNGC 1 cut(s) 230
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 2 cut(s) 191, 379
Cfr13I GGNCC 3 cut(s) 65, 437, 1147
Cfr42I CCGCGG 1 cut(s) 20
CseI GACGC 1 cut(s) 900
Csp6I GTAC 3 cut(s) 99, 775, 1109
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 7 cut(s) 229, 426, 637, 940, 949, 1009, 1166
CviQI GTAC 3 cut(s) 99, 775, 1109
DdeI CTNAG 2 cut(s) 686, 897
DpnI GATC 3 cut(s) 932, 1028, 1154
DpnII GATC 3 cut(s) 930, 1026, 1152
EaeI YGGCCR 1 cut(s) 936
Eam1104I CTCTTC 2 cut(s) 64, 201
EarI CTCTTC 2 cut(s) 64, 201
Ecl136II GAGCTC 1 cut(s) 626
Eco130I CCWWGG 3 cut(s) 296, 636, 939
Eco24I GRGCYC 2 cut(s) 140, 628
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 626
EcoT14I CCWWGG 3 cut(s) 296, 636, 939
EcoT38I GRGCYC 2 cut(s) 140, 628
ErhI CCWWGG 3 cut(s) 296, 636, 939
FaeI CATG 7 cut(s) 232, 429, 640, 943, 952, 1012, 1169
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FaqI GGGAC 1 cut(s) 426
FatI CATG 7 cut(s) 228, 425, 636, 939, 948, 1008, 1165
FauI CCCGC 3 cut(s) 24, 308, 993
FbaI TGATCA 2 cut(s) 930, 1026
Fnu4HI GCNGC 8 cut(s) 82, 308, 311, 453, 456, 633, 989, 1001
FokI GGATG 4 cut(s) 556, 698, 856, 956
FriOI GRGCYC 2 cut(s) 140, 628
Fsp4HI GCNGC 8 cut(s) 82, 308, 311, 453, 456, 633, 989, 1001
FspBI CTAG 6 cut(s) 297, 324, 330, 348, 489, 716
GlaI GCGC 1 cut(s) 314
GluI GCNGC 8 cut(s) 82, 308, 311, 453, 456, 633, 989, 1001
GsaI CCCAGC 1 cut(s) 144
HaeIII GGCC 3 cut(s) 67, 938, 1148
HapII CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1150
HgaI GACGC 1 cut(s) 900
HhaI GCGC 1 cut(s) 315
Hin1I GRCGYC 1 cut(s) 911
Hin1II CATG 7 cut(s) 232, 429, 640, 943, 952, 1012, 1169
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 3 cut(s) 150, 337, 830
HpaII CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1150
HphI GGTGA 3 cut(s) 145, 493, 859
Hpy166II GTNNAC 3 cut(s) 174, 341, 775
Hpy188I TCNGA 5 cut(s) 135, 276, 336, 534, 579
Hpy188III TCNNGA 3 cut(s) 186, 827, 861
Hpy8I GTNNAC 3 cut(s) 174, 341, 775
Hpy99I CGWCG 1 cut(s) 364
HpyAV CCTTC 5 cut(s) 232, 251, 358, 399, 751
HpyCH4III ACNGT 4 cut(s) 217, 417, 433, 970
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 6 cut(s) 232, 310, 429, 586, 659, 736
HpyF10VI GCNNNNNNNGC 7 cut(s) 87, 287, 461, 632, 641, 988, 997
HpyF3I CTNAG 2 cut(s) 686, 897
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 1 cut(s) 911
Hsp92II CATG 7 cut(s) 232, 429, 640, 943, 952, 1012, 1169
HspAI GCGC 1 cut(s) 313
Kpn2I TCCGGA 1 cut(s) 860
Ksp22I TGATCA 2 cut(s) 930, 1026
KspI CCGCGG 1 cut(s) 20
Kzo9I GATC 3 cut(s) 930, 1026, 1152
LmnI GCTCC 5 cut(s) 30, 442, 603, 987, 1018
Lsp1109I GCAGC 6 cut(s) 93, 294, 322, 619, 987, 1000
LweI GCATC 2 cut(s) 757, 883
MaeI CTAG 6 cut(s) 297, 324, 330, 348, 489, 716
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 6 cut(s) 45, 194, 217, 970, 1012, 1168
MalI GATC 3 cut(s) 932, 1028, 1154
MboI GATC 3 cut(s) 930, 1026, 1152
MboII GAAGA 4 cut(s) 51, 65, 218, 547
MhlI GDGCHC 2 cut(s) 140, 628
MluCI AATT 8 cut(s) 690, 768, 783, 809, 864, 876, 977, 1049
MlyI GAGTC 1 cut(s) 346
MroI TCCGGA 1 cut(s) 860
MseI TTAA 2 cut(s) 1064, 1186
MslI CAYNNNNRTG 1 cut(s) 938
MspA1I CMGCKG 2 cut(s) 19, 991
MspI CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1150
MspR9I CCNGG 3 cut(s) 163, 411, 1150
Mva1269I GAATGC 1 cut(s) 283
MvnI CGCG 2 cut(s) 19, 315
MwoI GCNNNNNNNGC 7 cut(s) 87, 287, 461, 632, 641, 988, 997
NciI CCSGG 3 cut(s) 163, 411, 1150
NcoI CCATGG 2 cut(s) 636, 939
NdeII GATC 3 cut(s) 930, 1026, 1152
NlaIII CATG 7 cut(s) 232, 429, 640, 943, 952, 1012, 1169
NlaIV GGNNCC 1 cut(s) 26
NmeAIII GCCGAG 1 cut(s) 495
NmuCI GTSAC 2 cut(s) 45, 970
NspI RCATGY 1 cut(s) 232
PaeI GCATGC 1 cut(s) 232
PaeR7I CTCGAG 1 cut(s) 621
PcsI WCGNNNNNNNCGW 2 cut(s) 398, 473
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 150, 830
PfoI TCCNGGA 1 cut(s) 409
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 8 cut(s) 83, 309, 312, 454, 457, 634, 990, 1002
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Psp124BI GAGCTC 1 cut(s) 628
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 3 cut(s) 65, 437, 1147
PspXI VCTCGAGB 1 cut(s) 621
PstI CTGCAG 1 cut(s) 312
PvuII CAGCTG 1 cut(s) 991
RsaI GTAC 3 cut(s) 100, 776, 1110
RsaNI GTAC 3 cut(s) 99, 775, 1109
RseI CAYNNNNRTG 1 cut(s) 938
SacI GAGCTC 1 cut(s) 628
SacII CCGCGG 1 cut(s) 20
SaqAI TTAA 2 cut(s) 1064, 1186
SatI GCNGC 8 cut(s) 82, 308, 311, 453, 456, 633, 989, 1001
Sau3AI GATC 3 cut(s) 930, 1026, 1152
Sau96I GGNCC 3 cut(s) 65, 437, 1147
ScaI AGTACT 1 cut(s) 100
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 3 cut(s) 163, 411, 1150
SduI GDGCHC 2 cut(s) 140, 628
SfaNI GCATC 2 cut(s) 757, 883
SfcI CTRYAG 1 cut(s) 308
Sfr274I CTCGAG 1 cut(s) 621
Sfr303I CCGCGG 1 cut(s) 20
SgrAI CRCCGGYG 1 cut(s) 379
SgrBI CCGCGG 1 cut(s) 20
SinI GGWCC 1 cut(s) 437
SlaI CTCGAG 1 cut(s) 621
SmiMI CAYNNNNRTG 1 cut(s) 938
SmlI CTYRAG 3 cut(s) 621, 627, 743
SmoI CTYRAG 3 cut(s) 621, 627, 743
SphI GCATGC 1 cut(s) 232
Sse9I AATT 8 cut(s) 690, 768, 783, 809, 864, 876, 977, 1049
SsiI CCGC 8 cut(s) 17, 19, 90, 177, 315, 452, 455, 986
SspI AATATT 1 cut(s) 1061
SspMI CTAG 6 cut(s) 297, 324, 330, 348, 489, 716
SstI GAGCTC 1 cut(s) 628
StyD4I CCNGG 3 cut(s) 161, 409, 1148
StyI CCWWGG 3 cut(s) 296, 636, 939
TaaI ACNGT 4 cut(s) 217, 417, 433, 970
TaiI ACGT 1 cut(s) 47
TaqI TCGA 3 cut(s) 167, 359, 622
TaqII GACCGA 2 cut(s) 490, 1060
TasI AATT 8 cut(s) 690, 768, 783, 809, 864, 876, 977, 1049
TatI WGTACW 2 cut(s) 98, 1108
TauI GCSGC 2 cut(s) 455, 458
TfiI GAWTC 2 cut(s) 150, 830
Tru1I TTAA 2 cut(s) 1064, 1186
Tru9I TTAA 2 cut(s) 1064, 1186
TscAI CASTG 2 cut(s) 465, 682
TseFI GTSAC 2 cut(s) 45, 970
TseI GCWGC 6 cut(s) 81, 307, 310, 632, 988, 1000
Tsp45I GTSAC 2 cut(s) 45, 970
TspDTI ATGAA 4 cut(s) 219, 557, 1100, 1146
TspGWI ACGGA 1 cut(s) 1031
TspRI CASTG 2 cut(s) 465, 682
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 3 cut(s) 690, 783, 864
XceI RCATGY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 621
XmaJI CCTAGG 1 cut(s) 296
XspI CTAG 6 cut(s) 297, 324, 330, 348, 489, 716
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.