RLG00000026762

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0010964
Physical Location & Seq
Forward (+)
5707457 .. 5710424
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026762

Sequence Viewer

Length: 1260 bp
ATGGAAAACACATGCCCGCGGAGGCTCCAATCACATACAGCCACGCCACAACAGCACTCTTCTGGGCCTCGTCTTCTACGCAGCAGAAGCGGAAGTAGTACTTCTCCGGCGATAAACAACTCGTTATGCACTCCGAGCCCCAGCCACAGATTCACCACTCCCCGGTCGAAGTCCACCGCCAAATCCAGAACCGGTTACAGAGATGAAGAGAAAACGGTAACTTCCAGCATGCAAAAGATGGGGCAAGAGAATAGAGAAGGTAAAAATAATAGTCAGAATGCTACTTTTGCGATCCCTAGGTTGTTGGTGCAGCGCGGGAACACTAGCCCTAGTCCGAGTCCACGCCCTAGCCTTGGCTCGACGAAGGGGAGGAAGTCGCCGGTTTCTCCTTCGGCTTGGGCGTTGTCTCCGGGAAGGTCTTTGCCATGCACGATGGGACCGGAGCTGACTGCGGCGGCAGTGGCTTCGCCGAGACCGAGGGTGAAGTCTAGTGGGGGTGGAGTTGGTGGGGTTTTGAAGTATTTTAGGCTTCAGAAGAAAGGGATGACTATACAAGAGGAGGAGTTTCATCAGTTTCGGATTTTGCATAATAGGTTGCTCCAATGGAGGTTTGCCAATGCTCGAGCTCAAGCTGCCATGGTTGCTTCACACAAAGTTGCACAGGACAGAATGTTCAGTGTGTGGCTTAGAATTTTCAAAATGAGGAACTACATCCTAGATAAGCAACTAGAACTGCAAAAGCTCGAGCATCAAGTGAAGGTGTATCAAATTGTGTACCCTCAAATTTCTCTACTGAACGAATGGGGAAAATTGGAGAGAAAAAATCAAGAATCTGTGAGCAGGATGGTGAGGAAGTTATCCGGAATTTCAAATACAATTCCTTTGGTAAATGATGCTAAGGGAGATGCGGCGTCTATGTACGAAGCGATGATCACGGCCATGGATGTCATGGCTGGTATTCAAGCAACGGTCACTAAATTGCTCCCGCAGCTCGAAAAGCTGCTCTACATGGTTACGGAGCTTTTGATCACGCAGAAGCAACAAAGAGAATTAGAGAAATATATAACATCGGTCGTTGGTCTTATGAAAGAGGAGACAAGCGTGAGAGTACATCTCATCCAAGTAGCGAATGAAAGTCAAGGAGAGGCCCGGGGTTCCAAGCTCTTGATGGCAATCTACCTAGCCTTTGGTGTGAAATGTGAACTCAACCCATTTACTCATAAGTCTAAAAGACTTGACCCTTCCCCTTTCTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

420

Amino Acids

46.85

Weight (kDa)

10.24

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QWRF PF04484 32 - 351 6.1e-68 QWRF family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 19, 315
AccIII TCCGGA 1 cut(s) 860
AciI CCGC 9 cut(s) 17, 19, 90, 177, 315, 452, 455, 908, 986
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 936
AcsI RAATTY 3 cut(s) 690, 783, 864
AcuI CTGAAG 1 cut(s) 515
AcyI GRCGYC 1 cut(s) 911
AfaI GTAC 4 cut(s) 100, 776, 920, 1110
AfiI CCNNNNNNNGG 2 cut(s) 162, 353
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 4 cut(s) 517, 697, 870, 962
AloI GAACNNNNNNTCC 2 cut(s) 656, 688
AluBI AGCT 8 cut(s) 445, 626, 632, 742, 991, 1000, 1021, 1162
AluI AGCT 8 cut(s) 445, 626, 632, 742, 991, 1000, 1021, 1162
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 3 cut(s) 411, 466, 1088
AlwI GGATC 1 cut(s) 286
Ama87I CYCGRG 3 cut(s) 621, 743, 1149
Aor13HI TCCGGA 1 cut(s) 860
AoxI GGCC 3 cut(s) 65, 936, 1146
ApeKI GCWGC 5 cut(s) 81, 310, 632, 988, 1000
ApoI RAATTY 3 cut(s) 690, 783, 864
AsiGI ACCGGT 1 cut(s) 191
AspA2I CCTAGG 1 cut(s) 296
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 3 cut(s) 65, 437, 1147
AsuC2I CCSGG 4 cut(s) 163, 411, 1150, 1151
AsuHPI GGTGA 3 cut(s) 145, 493, 859
AvaI CYCGRG 3 cut(s) 621, 743, 1149
AvaII GGWCC 1 cut(s) 437
AvrII CCTAGG 1 cut(s) 296
BanII GRGCYC 2 cut(s) 140, 628
BbsI GAAGAC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 5 cut(s) 93, 322, 619, 987, 1000
BccI CCATC 4 cut(s) 232, 427, 838, 1162
BceAI ACGGC 1 cut(s) 951
BcgI CGANNNNNNTGC 2 cut(s) 447, 481
BclI TGATCA 2 cut(s) 930, 1026
BcnI CCSGG 4 cut(s) 163, 411, 1150, 1151
BcoDI GTCTC 3 cut(s) 411, 466, 1088
BfaI CTAG 8 cut(s) 297, 324, 330, 348, 489, 716, 728, 1181
BisI GCNGC 8 cut(s) 82, 311, 453, 456, 633, 909, 989, 1001
BlnI CCTAGG 1 cut(s) 296
BlsI GCNGC 8 cut(s) 83, 312, 454, 457, 634, 910, 990, 1002
BmcAI AGTACT 1 cut(s) 100
Bme1390I CCNGG 4 cut(s) 163, 411, 1150, 1151
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 3 cut(s) 621, 743, 1149
BmgT120I GGNCC 3 cut(s) 65, 437, 1147
BmiI GGNNCC 3 cut(s) 26, 438, 1156
BmrFI CCNGG 4 cut(s) 163, 411, 1150, 1151
BmsI GCATC 3 cut(s) 757, 883, 895
BpiI GAAGAC 1 cut(s) 65
BplI GAGNNNNNCTC 2 cut(s) 1098, 1130
Bpu10I CCTNAGC 1 cut(s) 897
BpuEI CTTGAG 1 cut(s) 612
BpuMI CCSGG 4 cut(s) 163, 411, 1150, 1151
BsaBI GATNNNNATC 1 cut(s) 1172
BsaHI GRCGYC 1 cut(s) 911
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 9 cut(s) 17, 161, 296, 352, 476, 636, 939, 1149, 1150
BsaWI WCCGGW 3 cut(s) 191, 439, 860
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 353
Bse118I RCCGGY 2 cut(s) 191, 379
Bse8I GATNNNNATC 1 cut(s) 1172
BseAI TCCGGA 1 cut(s) 860
BseDI CCNNGG 9 cut(s) 17, 161, 296, 352, 476, 636, 939, 1149, 1150
BseGI GGATG 5 cut(s) 549, 711, 849, 949, 1116
BseJI GATNNNNATC 1 cut(s) 1172
BseLI CCNNNNNNNGG 2 cut(s) 162, 353
BseRI GAGGAG 3 cut(s) 572, 575, 1106
BseXI GCAGC 5 cut(s) 93, 322, 619, 987, 1000
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 329
Bsh1236I CGCG 2 cut(s) 19, 315
Bsh1285I CGRYCG 2 cut(s) 167, 1074
BshFI GGCC 3 cut(s) 67, 938, 1148
BshTI ACCGGT 1 cut(s) 191
BsiEI CGRYCG 2 cut(s) 167, 1074
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 3 cut(s) 621, 743, 1149
BsiSI CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1150
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 2 cut(s) 162, 353
BsmAI GTCTC 3 cut(s) 411, 466, 1088
BsmFI GGGAC 1 cut(s) 450
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 3 cut(s) 67, 938, 1148
Bso31I GGTCTC 1 cut(s) 466
BsoBI CYCGRG 3 cut(s) 621, 743, 1149
Bsp1286I GDGCHC 2 cut(s) 140, 628
Bsp13I TCCGGA 1 cut(s) 860
Bsp143I GATC 3 cut(s) 291, 930, 1026
Bsp19I CCATGG 2 cut(s) 636, 939
BspACI CCGC 9 cut(s) 17, 19, 90, 177, 315, 452, 455, 908, 986
BspANI GGCC 3 cut(s) 67, 938, 1148
BspEI TCCGGA 1 cut(s) 860
BspFNI CGCG 2 cut(s) 19, 315
BspLI GGNNCC 3 cut(s) 26, 438, 1156
BspPI GGATC 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 466
BsrFI RCCGGY 2 cut(s) 191, 379
BssAI RCCGGY 2 cut(s) 191, 379
BssECI CCNNGG 9 cut(s) 17, 161, 296, 352, 476, 636, 939, 1149, 1150
BssMI GATC 3 cut(s) 291, 930, 1026
BssNI GRCGYC 1 cut(s) 911
BssT1I CCWWGG 4 cut(s) 296, 352, 636, 939
Bst4CI ACNGT 2 cut(s) 217, 970
Bst6I CTCTTC 2 cut(s) 64, 201
BstACI GRCGYC 1 cut(s) 911
BstC8I GCNNGC 2 cut(s) 17, 230
BstDEI CTNAG 2 cut(s) 686, 897
BstDSI CCRYGG 3 cut(s) 17, 636, 939
BstF5I GGATG 5 cut(s) 549, 711, 849, 949, 1116
BstFNI CGCG 2 cut(s) 19, 315
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 3 cut(s) 294, 933, 1029
BstMAI GTCTC 3 cut(s) 411, 466, 1088
BstMBI GATC 3 cut(s) 291, 930, 1026
BstMCI CGRYCG 2 cut(s) 167, 1074
BstMWI GCNNNNNNNGC 9 cut(s) 52, 87, 135, 287, 461, 632, 641, 988, 997
BstNSI RCATGY 2 cut(s) 15, 232
BstSCI CCNGG 4 cut(s) 161, 409, 1148, 1149
BstUI CGCG 2 cut(s) 19, 315
BstV1I GCAGC 5 cut(s) 93, 322, 619, 987, 1000
BstV2I GAAGAC 1 cut(s) 65
BsuRI GGCC 3 cut(s) 67, 938, 1148
BtgI CCRYGG 3 cut(s) 17, 636, 939
BtgZI GCGATG 1 cut(s) 941
BtsCI GGATG 5 cut(s) 549, 711, 849, 949, 1116
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 2 cut(s) 465, 682
Cac8I GCNNGC 2 cut(s) 17, 230
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 2 cut(s) 191, 379
Cfr13I GGNCC 3 cut(s) 65, 437, 1147
Cfr42I CCGCGG 1 cut(s) 20
Cfr9I CCCGGG 1 cut(s) 1149
CseI GACGC 1 cut(s) 900
Csp6I GTAC 4 cut(s) 99, 775, 919, 1109
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 7 cut(s) 12, 229, 426, 637, 940, 949, 1009
CviQI GTAC 4 cut(s) 99, 775, 919, 1109
DdeI CTNAG 2 cut(s) 686, 897
DpnI GATC 3 cut(s) 293, 932, 1028
DpnII GATC 3 cut(s) 291, 930, 1026
EaeI YGGCCR 1 cut(s) 936
Eam1104I CTCTTC 2 cut(s) 64, 201
EarI CTCTTC 2 cut(s) 64, 201
Ecl136II GAGCTC 1 cut(s) 626
Eco130I CCWWGG 4 cut(s) 296, 352, 636, 939
Eco24I GRGCYC 2 cut(s) 140, 628
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 626
Eco57I CTGAAG 1 cut(s) 515
Eco88I CYCGRG 3 cut(s) 621, 743, 1149
EcoICRI GAGCTC 1 cut(s) 626
EcoT14I CCWWGG 4 cut(s) 296, 352, 636, 939
EcoT38I GRGCYC 2 cut(s) 140, 628
ErhI CCWWGG 4 cut(s) 296, 352, 636, 939
FaeI CATG 7 cut(s) 15, 232, 429, 640, 943, 952, 1012
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FaqI GGGAC 1 cut(s) 450
FatI CATG 7 cut(s) 11, 228, 425, 636, 939, 948, 1008
FauI CCCGC 3 cut(s) 24, 308, 993
FbaI TGATCA 2 cut(s) 930, 1026
Fnu4HI GCNGC 8 cut(s) 82, 311, 453, 456, 633, 909, 989, 1001
FokI GGATG 5 cut(s) 556, 698, 856, 956, 1103
FriOI GRGCYC 2 cut(s) 140, 628
Fsp4HI GCNGC 8 cut(s) 82, 311, 453, 456, 633, 909, 989, 1001
FspBI CTAG 8 cut(s) 297, 324, 330, 348, 489, 716, 728, 1181
GlaI GCGC 1 cut(s) 314
GluI GCNGC 8 cut(s) 82, 311, 453, 456, 633, 909, 989, 1001
GsaI CCCAGC 1 cut(s) 144
HaeIII GGCC 3 cut(s) 67, 938, 1148
HapII CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1150
HgaI GACGC 1 cut(s) 900
HhaI GCGC 1 cut(s) 315
Hin1I GRCGYC 1 cut(s) 911
Hin1II CATG 7 cut(s) 15, 232, 429, 640, 943, 952, 1012
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 3 cut(s) 150, 337, 830
HpaII CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1150
HphI GGTGA 3 cut(s) 145, 493, 859
Hpy166II GTNNAC 4 cut(s) 174, 341, 775, 1202
Hpy188I TCNGA 5 cut(s) 135, 276, 336, 534, 579
Hpy188III TCNNGA 4 cut(s) 186, 827, 861, 1165
Hpy8I GTNNAC 4 cut(s) 174, 341, 775, 1202
Hpy99I CGWCG 1 cut(s) 364
HpyAV CCTTC 6 cut(s) 251, 358, 399, 408, 751, 1251
HpyCH4III ACNGT 2 cut(s) 217, 970
HpyCH4V TGCA 7 cut(s) 129, 232, 310, 429, 586, 659, 736
HpyF10VI GCNNNNNNNGC 9 cut(s) 52, 87, 135, 287, 461, 632, 641, 988, 997
HpyF3I CTNAG 2 cut(s) 686, 897
Hsp92I GRCGYC 1 cut(s) 911
Hsp92II CATG 7 cut(s) 15, 232, 429, 640, 943, 952, 1012
HspAI GCGC 1 cut(s) 313
Kpn2I TCCGGA 1 cut(s) 860
Ksp22I TGATCA 2 cut(s) 930, 1026
KspI CCGCGG 1 cut(s) 20
Kzo9I GATC 3 cut(s) 291, 930, 1026
LmnI GCTCC 5 cut(s) 30, 442, 603, 987, 1018
Lsp1109I GCAGC 5 cut(s) 93, 322, 619, 987, 1000
LweI GCATC 3 cut(s) 757, 883, 895
MaeI CTAG 8 cut(s) 297, 324, 330, 348, 489, 716, 728, 1181
MaeIII GTNAC 4 cut(s) 194, 217, 970, 1012
MalI GATC 3 cut(s) 293, 932, 1028
MboI GATC 3 cut(s) 291, 930, 1026
MboII GAAGA 4 cut(s) 51, 65, 218, 547
MhlI GDGCHC 2 cut(s) 140, 628
MluCI AATT 8 cut(s) 690, 768, 783, 809, 864, 876, 977, 1049
MlyI GAGTC 1 cut(s) 346
MroI TCCGGA 1 cut(s) 860
MseI TTAA 1 cut(s) 1258
MslI CAYNNNNRTG 1 cut(s) 938
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 8 cut(s) 107, 163, 192, 380, 410, 440, 861, 1150
MspR9I CCNGG 4 cut(s) 163, 411, 1150, 1151
Mva1269I GAATGC 1 cut(s) 283
MvnI CGCG 2 cut(s) 19, 315
MwoI GCNNNNNNNGC 9 cut(s) 52, 87, 135, 287, 461, 632, 641, 988, 997
NciI CCSGG 4 cut(s) 163, 411, 1150, 1151
NcoI CCATGG 2 cut(s) 636, 939
NdeII GATC 3 cut(s) 291, 930, 1026
NlaIII CATG 7 cut(s) 15, 232, 429, 640, 943, 952, 1012
NlaIV GGNNCC 3 cut(s) 26, 438, 1156
NmeAIII GCCGAG 1 cut(s) 495
NmuCI GTSAC 1 cut(s) 970
NspI RCATGY 2 cut(s) 15, 232
PaeI GCATGC 1 cut(s) 232
PaeR7I CTCGAG 2 cut(s) 621, 743
PcsI WCGNNNNNNNCGW 2 cut(s) 398, 473
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 150, 830
PfoI TCCNGGA 1 cut(s) 409
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 8 cut(s) 83, 312, 454, 457, 634, 910, 990, 1002
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Psp124BI GAGCTC 1 cut(s) 628
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 26, 438, 1156
PspPI GGNCC 3 cut(s) 65, 437, 1147
PspXI VCTCGAGB 2 cut(s) 621, 743
RsaI GTAC 4 cut(s) 100, 776, 920, 1110
RsaNI GTAC 4 cut(s) 99, 775, 919, 1109
RseI CAYNNNNRTG 1 cut(s) 938
SacI GAGCTC 1 cut(s) 628
SacII CCGCGG 1 cut(s) 20
SaqAI TTAA 1 cut(s) 1258
SatI GCNGC 8 cut(s) 82, 311, 453, 456, 633, 909, 989, 1001
Sau3AI GATC 3 cut(s) 291, 930, 1026
Sau96I GGNCC 3 cut(s) 65, 437, 1147
ScaI AGTACT 1 cut(s) 100
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 4 cut(s) 163, 411, 1150, 1151
SduI GDGCHC 2 cut(s) 140, 628
SfaNI GCATC 3 cut(s) 757, 883, 895
Sfr274I CTCGAG 2 cut(s) 621, 743
Sfr303I CCGCGG 1 cut(s) 20
SgrBI CCGCGG 1 cut(s) 20
SinI GGWCC 1 cut(s) 437
SlaI CTCGAG 2 cut(s) 621, 743
SmaI CCCGGG 1 cut(s) 1151
SmiMI CAYNNNNRTG 1 cut(s) 938
SmlI CTYRAG 3 cut(s) 621, 627, 743
SmoI CTYRAG 3 cut(s) 621, 627, 743
SphI GCATGC 1 cut(s) 232
Sse9I AATT 8 cut(s) 690, 768, 783, 809, 864, 876, 977, 1049
SsiI CCGC 9 cut(s) 17, 19, 90, 177, 315, 452, 455, 908, 986
SspMI CTAG 8 cut(s) 297, 324, 330, 348, 489, 716, 728, 1181
SstI GAGCTC 1 cut(s) 628
StyD4I CCNGG 4 cut(s) 161, 409, 1148, 1149
StyI CCWWGG 4 cut(s) 296, 352, 636, 939
TaaI ACNGT 2 cut(s) 217, 970
TaqI TCGA 5 cut(s) 167, 359, 622, 744, 993
TaqII GACCGA 2 cut(s) 490, 1060
TasI AATT 8 cut(s) 690, 768, 783, 809, 864, 876, 977, 1049
TatI WGTACW 2 cut(s) 98, 1108
TauI GCSGC 3 cut(s) 455, 458, 911
TfiI GAWTC 2 cut(s) 150, 830
Tru1I TTAA 1 cut(s) 1258
Tru9I TTAA 1 cut(s) 1258
TscAI CASTG 2 cut(s) 465, 682
TseFI GTSAC 1 cut(s) 970
TseI GCWGC 5 cut(s) 81, 310, 632, 988, 1000
Tsp45I GTSAC 1 cut(s) 970
TspDTI ATGAA 4 cut(s) 219, 557, 1100, 1146
TspGWI ACGGA 1 cut(s) 1031
TspMI CCCGGG 1 cut(s) 1149
TspRI CASTG 2 cut(s) 465, 682
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 3 cut(s) 690, 783, 864
XceI RCATGY 2 cut(s) 15, 232
XcmI CCANNNNNNNNNTGG 2 cut(s) 946, 1165
XhoI CTCGAG 2 cut(s) 621, 743
XmaI CCCGGG 1 cut(s) 1149
XmaJI CCTAGG 1 cut(s) 296
XspI CTAG 8 cut(s) 297, 324, 330, 348, 489, 716, 728, 1181
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.