Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8026676.1

Orthogroup ID

OG0010964

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 505

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8026676.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgactatacaagaggaggagtttcatcagtttcggattttgcataataggttgctccaatggagatttgccaatgctcgagctcaagctgccatggttgcttcacacaaagttgcaaaggacagaatgttcagtgtgtggcttagaattttcaaaatgaggaactacatcctagataagcaactacaactgcaaaagctcaagcatcaagtgaaggtgtatcaaattgtgtaccctcaaatttctctactgaacgaatgggggaaattggagagaaaaaatcaagaatctgtgagcaggatggtgaggaagttatccggaatttcaaatataattcctttggtaaatgatgctaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

119

Amino Acids

14.28

Weight (kDa)

10.51

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25190 AT4G25190
fragaria_vesca	FvH4_7g27280 FvH4_7g27280
malus_domestica	MD01G1181900.v1.1 MD07G1252100.v1.1
prunus_persica	Prupe.2G275600_v2.0.a1
pyrus_communis	pycom01g19170 pycom07g22440 pycom07g22450
rosa_chinensis	RchiOBHm_Chr1g0374111
rosa_laevigata	RLG00000026762
rosa_multiflora	Rmu_co8026676.1_g000001 Rmu_sc0022506.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283720
rosa_samantha	Rh1AG391600 Rh1BG355700 Rh1CG368600 Rh1DG386300
rosa_wichuraiana	Rw1G034400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	317
AcsI	RAATTY	3 cut(s)	147, 240, 321
AfaI	GTAC	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	154, 327
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	3 cut(s)	83, 89, 199
AluI	AGCT	3 cut(s)	83, 89, 199
Alw21I	GWGCWC	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	78
Aor13HI	TCCGGA	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	3 cut(s)	147, 240, 321
AsuHPI	GGTGA	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	78
BmsI	GCATC	2 cut(s)	214, 340
BpuEI	CTTGAG	2 cut(s)	69, 185
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	317
BseAI	TCCGGA	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	168, 306
BseRI	GAGGAG	2 cut(s)	29, 32
BseXI	GCAGC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	318
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp13I	TCCGGA	1 cut(s)	317
Bsp19I	CCATGG	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	143, 354
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	168, 306
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 98
BstV1I	GCAGC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	168, 306
BtsIMutI	CAGTG	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	4 cut(s)	83, 89, 142, 199
CviKI_1	RGCY	4 cut(s)	83, 89, 142, 199
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	143, 354
Ecl136II	GAGCTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	97
FaiI	YATR	4 cut(s)	8, 45, 95, 332
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	155, 313
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	1 cut(s)	90
HapII	CCGG	1 cut(s)	318
Hin1II	CATG	1 cut(s)	97
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	2 cut(s)	284, 318
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	208
HpyCH4V	TGCA	3 cut(s)	43, 116, 193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 98
HpyF3I	CTNAG	2 cut(s)	143, 354
Hsp92II	CATG	1 cut(s)	97
Kpn2I	TCCGGA	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	2 cut(s)	283, 331
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	214, 340
MaeI	CTAG	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	6 cut(s)	147, 225, 240, 266, 321, 333
MnlI	CCTC	5 cut(s)	7, 10, 153, 246, 300
MroI	TCCGGA	1 cut(s)	317
MspI	CCGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	89, 98
NcoI	CCATGG	1 cut(s)	93
NlaIII	CATG	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	85
PspXI	VCTCGAGB	1 cut(s)	78
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	85
SatI	GCNGC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	5 cut(s)	53, 85, 91, 201, 219
SfaNI	GCATC	2 cut(s)	214, 340
Sfr274I	CTCGAG	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	78
SmlI	CTYRAG	3 cut(s)	78, 84, 200
SmoI	CTYRAG	3 cut(s)	78, 84, 200
Sse9I	AATT	6 cut(s)	147, 225, 240, 266, 321, 333
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	93
TaqI	TCGA	1 cut(s)	79
TasI	AATT	6 cut(s)	147, 225, 240, 266, 321, 333
TfiI	GAWTC	1 cut(s)	287
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	14
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	3 cut(s)	147, 240, 321
XhoI	CTCGAG	1 cut(s)	78
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.